Attachment 152070 Details for Bug 197039 – poudriere-buildlog-10amd64-migrate

poudriere-buildlog-10amd64-migrate

10amd64-default.log (text/plain), 47.51 KB, created by Anton Törnqvist on 2015-01-24 00:18:57 UTC

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Creator: Anton Törnqvist

Created: 2015-01-24 00:18:57 UTC

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obsolete

>build started at Sat Jan 24 02:28:14 CET 2015
>port directory: /usr/ports/biology/migrate
>building for: FreeBSD 10amd64-default 10.0-RELEASE-p12 FreeBSD 10.0-RELEASE-p12 amd64
>maintained by: ports@FreeBSD.org
>Makefile ident:      $FreeBSD: head/biology/migrate/Makefile 374114 2014-12-06 14:54:48Z wen $
>Poudriere version: 3.1.0
>Host OSVERSION: 1001000
>Jail OSVERSION: 1000510
>
>---Begin Environment---
>PKGREPOSITORY=/tmp/pkgs
>PACKAGES=/tmp/pkgs
>ABI_FILE=/usr/lib/crt1.o
>OSVERSION=1000510
>UNAME_v=FreeBSD 10.0-RELEASE-p12
>UNAME_r=10.0-RELEASE-p12
>BLOCKSIZE=K
>MAIL=/var/mail/root
>STATUS=1
>SAVED_TERM=xterm
>NO_WARNING_PKG_INSTALL_EOL=yes
>MASTERMNT=/usr/local/poudriere/data/.m/10amd64-default/ref
>FORCE_PACKAGE=yes
>PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
>POUDRIERE_BUILD_TYPE=bulk
>OLDPWD=/usr/home/anton
>PWD=/
>MASTERNAME=10amd64-default
>USER=root
>HOME=/root
>POUDRIERE_VERSION=3.1.0
>TRYBROKEN=yes
>LOCALBASE=/usr/local
>PACKAGE_BUILDING=yes
>---End Environment---
>
>---Begin OPTIONS List---
>===> The following configuration options are available for migrate-3.6.6:
>     DOCS=on: Build and/or install documentation
>     EXAMPLES=on: Build and/or install examples
>===> Use 'make config' to modify these settings
>---End OPTIONS List---
>
>--CONFIGURE_ARGS--
>--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
>--End CONFIGURE_ARGS--
>
>--CONFIGURE_ENV--
>ac_cv_prog_GMAKE="make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
>--End CONFIGURE_ENV--
>
>--MAKE_ENV--
>XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work  HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="install  -o root -g wheel -m 0644"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
>--End MAKE_ENV--
>
>--PLIST_SUB--
>PORTNAME=migrate
>OSREL=10.0
>PREFIX=%D
>LOCALBASE=/usr/local
>RESETPREFIX=/usr/local
>PORTDOCS=""
>PORTEXAMPLES=""
>LIB32DIR=lib
>DOCSDIR="share/doc/migrate"
>EXAMPLESDIR="share/examples/migrate"
>DATADIR="share/migrate"
>WWWDIR="www/migrate"
>ETCDIR="etc/migrate"
>--End PLIST_SUB--
>
>--SUB_LIST--
>PREFIX=/usr/local
>LOCALBASE=/usr/local
>DATADIR=/usr/local/share/migrate
>DOCSDIR=/usr/local/share/doc/migrate
>EXAMPLESDIR=/usr/local/share/examples/migrate
>WWWDIR=/usr/local/www/migrate
>ETCDIR=/usr/local/etc/migrate
>--End SUB_LIST--
>
>---Begin make.conf---
>USE_PACKAGE_DEPENDS=yes
>BATCH=yes
>WRKDIRPREFIX=/wrkdirs
>PORTSDIR=/usr/ports
>PACKAGES=/packages
>DISTDIR=/distfiles
>---End make.conf---
>=======================<phase: check-sanity   >============================
>===========================================================================
>=======================<phase: pkg-depends    >============================
>===>   migrate-3.6.6 depends on file: /usr/local/sbin/pkg - not found
>===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
>===>   Installing existing package /packages/All/pkg-1.3.8_3.txz
>[10amd64-default] Installing pkg-1.3.8_3... done
>Message for pkg-1.3.8_3:
> If you are upgrading from the old package format, first run:
>
>  # pkg2ng
>===>   Returning to build of migrate-3.6.6
>===========================================================================
>=======================<phase: fetch-depends  >============================
>===========================================================================
>=======================<phase: fetch          >============================
>===>   migrate-3.6.6 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by migrate-3.6.6 for building
>===========================================================================
>=======================<phase: checksum       >============================
>===>   migrate-3.6.6 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by migrate-3.6.6 for building
>=> SHA256 Checksum OK for migrate-3.6.6.src.tar.gz.
>===========================================================================
>=======================<phase: extract-depends>============================
>===========================================================================
>=======================<phase: extract        >============================
>===>   migrate-3.6.6 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by migrate-3.6.6 for building
>===>  Extracting for migrate-3.6.6
>=> SHA256 Checksum OK for migrate-3.6.6.src.tar.gz.
>===========================================================================
>=======================<phase: patch-depends  >============================
>===========================================================================
>=======================<phase: patch          >============================
>===>  Patching for migrate-3.6.6
>===>  Applying FreeBSD patches for migrate-3.6.6
>===========================================================================
>=======================<phase: build-depends  >============================
>===========================================================================
>=======================<phase: lib-depends    >============================
>===========================================================================
>====>> Recording filesystem state for prebuild... done
>=======================<phase: configure      >============================
>===>  Configuring for migrate-3.6.6
>configure: loading site script /usr/ports/Templates/config.site
>checking build system type... amd64-portbld-freebsd10.0
>checking host system type... amd64-portbld-freebsd10.0
>checking target system type... amd64-portbld-freebsd10.0
>./configure: USERFLAGS+=-O2: not found
>checking for gmake... (cached) make
>=======================================================================
>Migrate subversion: 
>Hardware: portbld
>System OS: freebsd10.0  FreeBSD  
>System CPU: amd64
>-----------------------------------------------------------------------
>checking whether the C compiler works... yes
>checking for C compiler default output file name... a.out
>checking for suffix of executables... 
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C compiler... yes
>checking whether cc accepts -g... yes
>checking for cc option to accept ISO C89... none needed
>checking whether we are using the GNU C++ compiler... yes
>checking whether c++ accepts -g... yes
>./configure: CFLAGS+=: not found
>C-compiler:  cc
>C++-compiler:c++
>CFLAGS: -O2 -pipe -fstack-protector -fno-strict-aliasing
>=======================================================================
>checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
>checking for pthread_create in -pthread... yes
>checking for MPI_Init in -lmpi... no
>checking for exp in -lm... yes
>checking how to run the C preprocessor... cpp
>checking for grep that handles long lines and -e... (cached) /usr/bin/grep
>checking for egrep... (cached) /usr/bin/egrep
>checking for ANSI C header files... (cached) yes
>checking for sys/types.h... (cached) yes
>checking for sys/stat.h... (cached) yes
>checking for stdlib.h... (cached) yes
>checking for string.h... (cached) yes
>checking for memory.h... (cached) yes
>checking for strings.h... (cached) yes
>checking for inttypes.h... (cached) yes
>checking for stdint.h... (cached) yes
>checking for unistd.h... (cached) yes
>checking for limits.h... (cached) yes
>checking for strings.h... (cached) yes
>checking pthread.h usability... yes
>checking pthread.h presence... yes
>checking for pthread.h... yes
>checking for an ANSI C-conforming const... yes
>checking for size_t... (cached) yes
>checking for int... (cached) yes
>checking whether struct tm is in sys/time.h or time.h... time.h
>checking for inline... inline
>checking return type of signal handlers... void
>checking for strftime... (cached) yes
>checking for strcspn... (cached) yes
>checking for strsep... (cached) yes
>checking for lgamma... yes
>checking which zlib implementation to use... autodetect
>checking for main in -lz... yes
>checking for gzbuffer... no
>configure: creating ./config.status
>config.status: creating Makefile
>config.status: creating conf.h
>config.status: conf.h is unchanged
> 
> MIGRATE-N is now setup
> to compile the program you need to type one of the
> commands below (ordered by preference):
> 
> SINGLE CPU machines 
>     make           # with PDF output support
>                    # this might fail on first attempt,
>                    # if the make fails, please let me know
>                    # often linking fails because the C++ pdf library
>                    # and the core migrate parts (C) mismatch
>                    # check the Makefile line for STDLIB= -lstdc++
> 
> SMP machines  more than 1 CPU in machine 
>     make thread    # uses the thread library if present
>     make           # on macs running macos 10.6+ using GrandCentral
> 
> PARALLEL Computers, Clusters with MPI software 
>     make mpis        # each cpu-core can be treated as a node
>     make mpis-thread # experimental, may increase load per node!
>------------------------------------------------------------------------
>SPEED and other TESTING 
>    the migrate website contains a testsuite.tar.gz that has
>    many tests for single, parallel and thread compilations
>    the tests are driven by a python script rt (see the README
>    in the testsuite) and a submit script that allows to streamline
>    submissions to a batch queue system, currently supported systems
>    are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE
>------------------------------------------------------------------------
>In case there are problems with the compile send a message to the 
>migrate-support@google.com usergroup, include a log of
>   ./configure
>   make
>=======================================================================
>===========================================================================
>=======================<phase: build          >============================
>===>  Building for migrate-3.6.6
>--- haru ---
>--- zlibsystem ---
>--- haru ---
>(cd ./haru ; make -f makefile.gcc "CC=c++" "CPP=cc" "ARCH=amd64" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ ")
>--- zlibsystem ---
>Using system zlib architecture
>--- haru ---
>--- PdfExceptions.o ---
>--- PdfList.o ---
>--- PdfUtils.o ---
>--- PdfStreams.o ---
>--- PdfExceptions.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfExceptions.cc
>--- PdfList.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfList.cc
>--- PdfUtils.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfUtils.cc
>--- PdfStreams.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfStreams.cc
>--- PdfExceptions.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfUtils.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfStreams.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfList.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfAutoPtrObjects.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfAutoPtrObjects.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfObjects.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfObjects.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfContents.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfContents.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfPages.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfPages.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFonts.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfXref.o ---
>--- PdfDestinations.o ---
>--- PdfXref.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfXref.cc
>--- PdfDestinations.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfDestinations.cc
>--- PdfXref.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfDestinations.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfOutlines.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfOutlines.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfBorderStyle.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfBorderStyle.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfAnnotations.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfAnnotations.cc
>--- PdfDoc.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfDoc.cc
>--- PdfAnnotations.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfDoc.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCatalog.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCatalog.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfInfo.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfInfo.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfEncoding.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfXObjects.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfXObjects.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef_Courier.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Courier.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef_Helvetica.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Helvetica.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef_Times.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Times.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef_Symbol.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_Symbol.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfFontDef_ZapfDingbats.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfFontDef_ZapfDingbats.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfEncoding_ISO8859.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_ISO8859.cc
>--- PdfEncoding_KOI8.o ---
>--- PdfEncoding_ISO8859.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfEncoding_MSCP.o ---
>--- PdfEncoding_KOI8.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_KOI8.cc
>--- PdfEncoding_MSCP.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncoding_MSCP.cc
>--- PdfEncoding_KOI8.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfEncoding_MSCP.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFonts.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfUnicodeText.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfUnicodeText.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_Gothic.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Gothic.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_Mincyo.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Mincyo.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_SimHei.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_SimHei.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_SimSun.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_SimSun.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_Ming.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Ming.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_Batang.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Batang.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfMbFontDef_Dotum.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfMbFontDef_Dotum.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_RKSJ.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_RKSJ.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_EUC.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_EUC.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_GB_EUC.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_GB_EUC.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_ETen_B5.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_ETen_B5.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_KSCms_UHC.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_KSCms_UHC.cc
>--- PdfCMap_KSC_EUC.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfCMap_KSC_EUC.cc
>--- PdfCMap_KSCms_UHC.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfCMap_KSC_EUC.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfPngImage.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfPngImage.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfJpegImage.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfJpegImage.cc
>--- PdfEncrypt.o ---
>--- PdfJpegImage.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- PdfEncrypt.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c PdfEncrypt.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharuc.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc.cc
>--- libharuc_jpfonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_jpfonts.cc
>--- libharuc.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharuc_krfonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_krfonts.cc
>--- libharuc_jpfonts.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharuc_krfonts.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharuc_cnsfonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_cnsfonts.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharuc_cntfonts.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharuc_cntfonts.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharu_png.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharu_png.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharu_jpeg.o ---
>cc -I.   -DNDEBUG -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++   -c libharu_jpeg.cc
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- libharu.a ---
>ar rc libharu.a PdfExceptions.o  PdfList.o  PdfUtils.o  PdfStreams.o  PdfAutoPtrObjects.o  PdfObjects.o  PdfContents.o  PdfPages.o  PdfFonts.o  PdfXref.o  PdfDestinations.o  PdfOutlines.o  PdfBorderStyle.o  PdfAnnotations.o  PdfDoc.o  PdfCatalog.o  PdfInfo.o  PdfEncoding.o  PdfFontDef.o  PdfXObjects.o  PdfFontDef_Courier.o  PdfFontDef_Helvetica.o  PdfFontDef_Times.o  PdfFontDef_Symbol.o  PdfFontDef_ZapfDingbats.o  PdfEncoding_ISO8859.o  PdfEncoding_KOI8.o  PdfEncoding_MSCP.o  PdfMbFonts.o  PdfCMap.o  PdfUnicodeText.o  PdfMbFontDef_Gothic.o  PdfMbFontDef_Mincyo.o  PdfMbFontDef_SimHei.o  PdfMbFontDef_SimSun.o  PdfMbFontDef_Ming.o  PdfMbFontDef_Batang.o  PdfMbFontDef_Dotum.o  PdfCMap_RKSJ.o  PdfCMap_EUC.o  PdfCMap_GB_EUC.o  PdfCMap_ETen_B5.o  PdfCMap_KSCms_UHC.o  PdfCMap_KSC_EUC.o  PdfPngImage.o  PdfJpegImage.o  PdfEncrypt.o  libharuc.o  libharuc_jpfonts.o  libharuc_krfonts.o  libharuc_cnsfonts.o  libharuc_cntfonts.o  libharu_png.o  libharu_jpeg.o
>ranlib libharu.a
>--- all ---
>/usr/bin/make migrate-n "CFLAGS = -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION=\"\\\"\\\"\" -DMIGRATEVERSION=\"\\\"3.6.6\\\"\"  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++" "LIBS = -Lharu -lharu  -lz -lm" "LDFLAGS =  "
>--- aic.o ---
>--- altivec.o ---
>--- autotune.o ---
>--- bayes.o ---
>--- aic.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c aic.c
>--- altivec.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c altivec.c
>--- autotune.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c autotune.c
>--- bayes.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c bayes.c
>--- autotune.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- aic.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- altivec.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- bayes.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- broyden.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c broyden.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- calculator.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c calculator.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- combroyden2.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c combroyden2.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- data.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c data.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- correlation.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c correlation.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- gammalike.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c gammalike.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- fst.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c fst.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- heating.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c heating.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- histogram.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c histogram.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- inthp.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c inthp.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- joint-chains.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c joint-chains.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- laguerre.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c laguerre.c
>--- lrt.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c lrt.c
>--- laguerre.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- lrt.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- main.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c main.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- migrate_mpi.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c migrate_mpi.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- mutationmodel.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c mutationmodel.c
>--- mcmc1.o ---
>--- mutationmodel.o ---
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- mcmc1.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c mcmc1.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- mcmc2.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c mcmc2.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- menu.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c menu.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- migevents.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c migevents.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- options.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c options.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- priors.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c priors.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- profile.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c profile.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- random.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c random.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- reporter.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c reporter.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- spline.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c spline.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- tools.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c tools.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- tree.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c tree.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- sequence.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c sequence.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- sighandler.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c sighandler.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- slice.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c slice.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- sort.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c sort.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- uep.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c uep.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- world.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c world.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- pretty.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c pretty.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- skyline.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c skyline.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- watterson.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c watterson.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- znzlib.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c znzlib.c
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- pretty-win32.o ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++ -c pretty-win32.cpp
>cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused
>--- migrate-n ---
>cc -O2 -pipe -fstack-protector -fno-strict-aliasing  -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937   -DMIGRATESUBVERSION="\"\"" -DMIGRATEVERSION="\"3.6.6\""  -O2 -pipe -fstack-protector -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu  -DPRETTY -lstdc++  -o migrate-n aic.o altivec.o autotune.o bayes.o broyden.o calculator.o combroyden2.o data.o correlation.o gammalike.o fst.o heating.o histogram.o inthp.o joint-chains.o laguerre.o lrt.o main.o migrate_mpi.o mutationmodel.o mcmc1.o mcmc2.o menu.o migevents.o options.o priors.o profile.o random.o reporter.o spline.o tools.o tree.o sequence.o sighandler.o slice.o sort.o uep.o world.o pretty.o skyline.o watterson.o znzlib.o pretty-win32.o  -Lharu -lharu  -lz -lm ;
>===========================================================================
>====>> Checking for filesystem violations... done
>=======================<phase: run-depends    >============================
>===========================================================================
>====>> Recording filesystem state for prestage... done
>=======================<phase: stage          >============================
>===>  Staging for migrate-3.6.6
>===>   Generating temporary packing list
>install  -s -o root -g wheel -m 555 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/migrate-n /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/bin
>/bin/ln -sf migrate-n /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/bin/migrate
>install  -o root -g wheel -m 444 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/migrate.1  /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/man/man1
>/bin/ln -sf migrate.1  /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/man/man1/migrate-n.1
>install  -o root -g wheel -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../HISTORY /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../README /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../README_PARALLEL_GENERAL /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../migrate.html /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/doc/migrate
>install  -o root -g wheel -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../graphics/* /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/doc/migrate/graphics
>install  -o root -g wheel -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.6/src/../example/[A-Za-z]*  /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/examples/migrate
>====> Compressing man pages (compress-man)
>===========================================================================
>====> Running Q/A tests (stage-qa)
>====> Checking for pkg-plist issues (check-plist)
>===> Parsing plist
>===> Checking for items in STAGEDIR missing from pkg-plist
>===> Checking for items in pkg-plist which are not in STAGEDIR
>===> No pkg-plist issues found (check-plist)
>====>> Checking for staging violations... done
>=======================<phase: package        >============================
>===>  Building package for migrate-3.6.6
>===========================================================================
>=======================<phase: install-mtree  >============================
>===========================================================================
>====>> Recording filesystem state for preinst... done
>=======================<phase: install        >============================
>===>  Installing for migrate-3.6.6
>===>  Checking if migrate already installed
>===>   Registering installation for migrate-3.6.6
>===========================================================================
>====>> Checking shared library dependencies
> 0x0000000000000001 (NEEDED)             Shared library: [libc++.so.1]
> 0x0000000000000001 (NEEDED)             Shared library: [libc.so.7]
> 0x0000000000000001 (NEEDED)             Shared library: [libcxxrt.so.1]
> 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
> 0x0000000000000001 (NEEDED)             Shared library: [libm.so.5]
> 0x0000000000000001 (NEEDED)             Shared library: [libz.so.6]
>=======================<phase: deinstall      >============================
>===>  Deinstalling for migrate
>===>   Deinstalling migrate-3.6.6
>Updating database digests format... done
>Checking integrity... done (0 conflicting)
>Deinstallation has been requested for the following 1 packages (of 0 packages in the universe):
>
>Installed packages to be REMOVED:
>	migrate-3.6.6
>
>The operation will free 9 MB.
>[10amd64-default] [1/1] Deleting migrate-3.6.6... done
>===========================================================================
>====>> Checking for extra files and directories
>[00:00:25] ====>> Installing from package
>[10amd64-default] Installing migrate-3.6.6... done
>[00:00:26] ====>> Cleaning up
>===>  Cleaning for migrate-3.6.6
>[00:00:26] ====>> Deinstalling package
>Updating database digests format... done
>Checking integrity... done (0 conflicting)
>Deinstallation has been requested for the following 1 packages (of 0 packages in the universe):
>
>Installed packages to be REMOVED:
>	migrate-3.6.6
>
>The operation will free 9 MB.
>[10amd64-default] [1/1] Deleting migrate-3.6.6... done
>build of biology/migrate ended at Sat Jan 24 02:28:28 CET 2015
>build time: 00:00:14

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Attachments on bug 197039: 152065 | 152070