Attachment 158356 Details for Bug 201346 – poudriere testport log for py27-scikit-sparse-0.2_1

poudriere testport log for py27-scikit-sparse-0.2_1

2015070400-py27-scikit-sparse.txt (text/plain), 26.96 KB, created by John W. O'Brien on 2015-07-05 00:54:21 UTC

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Creator: John W. O'Brien

Created: 2015-07-05 00:54:21 UTC

Size: 26.96 KB

patch

obsolete

>% sudo poudriere testport -j 101amd64 -z python27 -o science/py-scikit-sparse
>[00:00:00] ====>> Creating the reference jail... done
>[00:00:01] ====>> Mounting system devices for 101amd64-default-python27
>[00:00:01] ====>> Mounting ports/packages/distfiles
>[00:00:01] ====>> Stashing existing package repository
>[00:00:01] ====>> Mounting packages from: /srv/poudriere/data/packages/101amd64-default-python27
>[00:00:01] ====>> Appending to make.conf: /usr/local/etc/poudriere.d/make.conf
>[00:00:01] ====>> Appending to make.conf: /usr/local/etc/poudriere.d/python27-make.conf
>/etc/resolv.conf -> /srv/poudriere/data/.m/101amd64-default-python27/ref/etc/resolv.conf
>[00:00:01] ====>> Starting jail 101amd64-default-python27
>[00:00:01] ====>> Logs: /srv/poudriere/data/logs/bulk/101amd64-default-python27/2015-07-04_20h49m38s
>[00:00:01] ====>> WWW: https://pkg.saltant.net/poudriere/build.html?mastername=101amd64-default-python27&build=2015-07-04_20h49m38s
>[00:00:01] ====>> Loading MOVED
>[00:00:01] ====>> Calculating ports order and dependencies
>[00:00:02] ====>> Sanity checking the repository
>[00:00:02] ====>> Checking packages for incremental rebuild needed
>[00:00:04] ====>> Deleting stale symlinks
>[00:00:04] ====>> Deleting empty directories
>[00:00:04] ====>> Cleaning the build queue
>[00:00:04] ====>> Recording filesystem state for prepkg... done
>[00:00:05] ====>> Committing packages to repository
>[00:00:05] ====>> Removing old packages
>[00:00:05] ====>> Building with flags: 
>[00:00:05] ====>> Removing existing /usr/local
>build started at Sat Jul  4 20:49:43 EDT 2015
>port directory: /usr/ports/science/py-scikit-sparse
>building for: FreeBSD 101amd64-default-python27 10.1-RELEASE-p9 FreeBSD 10.1-RELEASE-p9 amd64
>maintained by: yuri@rawbw.com
>Makefile ident:      $FreeBSD: head/science/py-scikit-sparse/Makefile 389627 2015-06-14 12:39:04Z wen $
>Poudriere version: 3.1.7
>Host OSVERSION: 1001508
>Jail OSVERSION: 1001000
>
>---Begin Environment---
>PKGREPOSITORY=/tmp/pkgs
>PACKAGES=/tmp/pkgs
>OSVERSION=1001000
>UNAME_v=FreeBSD 10.1-RELEASE-p9
>UNAME_r=10.1-RELEASE-p9
>BLOCKSIZE=K
>MAIL=/var/mail/root
>STATUS=1
>SAVED_TERM=screen
>NO_WARNING_PKG_INSTALL_EOL=yes
>MASTERMNT=/srv/poudriere/data/.m/101amd64-default-python27/ref
>FORCE_PACKAGE=yes
>PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
>POUDRIERE_BUILD_TYPE=bulk
>OLDPWD=/tmp
>PWD=/
>MASTERNAME=101amd64-default-python27
>SCRIPTPREFIX=/usr/local/share/poudriere
>USER=root
>HOME=/root
>POUDRIERE_VERSION=3.1.7
>SCRIPTPATH=/usr/local/share/poudriere/testport.sh
>TRYBROKEN=yes
>LIBEXECPREFIX=/usr/local/libexec/poudriere
>LOCALBASE=/usr/local
>PACKAGE_BUILDING=yes
>---End Environment---
>
>---Begin OPTIONS List---
>---End OPTIONS List---
>
>--CONFIGURE_ARGS--
>
>--End CONFIGURE_ARGS--
>
>--CONFIGURE_ENV--
>F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work  HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh
>--End CONFIGURE_ENV--
>
>--MAKE_ENV--
>F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work  HOME=/wrkdirs/usr/ports/science/py-scikit-sparse/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  -I/usr/local/include -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc48  -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
>--End MAKE_ENV--
>
>--PLIST_SUB--
>PYTHON_INCLUDEDIR=include/python2.7
>PYTHON_LIBDIR=lib/python2.7
>PYTHON_PLATFORM=freebsd10
>PYTHON_SITELIBDIR=lib/python2.7/site-packages
>PYTHON_VERSION=python2.7
>PYTHON_VER=2.7
>OSREL=10.1
>PREFIX=%D
>LOCALBASE=/usr/local
>RESETPREFIX=/usr/local
>PORTDOCS="@comment
>"
>PORTEXAMPLES="@comment
>"
>LIB32DIR=lib
>DOCSDIR="share/doc/scikit-sparse"
>EXAMPLESDIR="share/examples/scikit-sparse"
>DATADIR="share/scikit-sparse"
>WWWDIR="www/scikit-sparse"
>ETCDIR="etc/scikit-sparse"
>--End PLIST_SUB--
>
>--SUB_LIST--
>PREFIX=/usr/local
>LOCALBASE=/usr/local
>DATADIR=/usr/local/share/scikit-sparse
>DOCSDIR=/usr/local/share/doc/scikit-sparse
>EXAMPLESDIR=/usr/local/share/examples/scikit-sparse
>WWWDIR=/usr/local/www/scikit-sparse
>ETCDIR=/usr/local/etc/scikit-sparse
>--End SUB_LIST--
>
>---Begin make.conf---
>USE_PACKAGE_DEPENDS=yes
>BATCH=yes
>WRKDIRPREFIX=/wrkdirs
>PORTSDIR=/usr/ports
>PACKAGES=/packages
>DISTDIR=/distfiles
>#### /usr/local/etc/poudriere.d/make.conf ####
>DEFAULT_VERSIONS=       python=2.7 python2=2.7 python3=3.4
>
>OPTIONS_UNSET+= DOCS EXAMPLES CJK
>OPTIONS_SET+=   IPV6 NLS
>
># For math/py-pandas QA testing
># Enable all optional dependencies
>math_py-pandas_SET=	MPL SCIPY
>math_py-pandas_SET+=	BTLNCK NUMEXPR
>math_py-pandas_SET+=	BOTO TABLES SQL
>math_py-pandas_SET+=	LXML HTML5LIB
>math_py-pandas_SET+=	XLRD XLWT
>math_py-pandas_SET+=	OPENPYXL2
>
>
># Things I want/don't want for all jail/set combinations
>security_sudo_SET=	INSULTS
>sysutils_screen_UNSET=	SYSTEM_SCREENRC
>
># vim: set ts=8:
>#### /usr/local/etc/poudriere.d/python27-make.conf ####
>PYTHON_VERSION=python2.7
>
>devel_ipython_SET=	HTML_NOTEBOOK
>devel_ipython_UNSET=	X11
>dns_py-dnspython_SET=	PYCRYPTO
>---End make.conf---
>=======================<phase: check-sanity   >============================
>===>  License BSD2CLAUSE accepted by the user
>===========================================================================
>=======================<phase: pkg-depends    >============================
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/sbin/pkg - not found
>===>   Installing existing package /packages/All/pkg-1.5.4.txz
>[101amd64-default-python27] Installing pkg-1.5.4...
>[101amd64-default-python27] Extracting pkg-1.5.4: .......... done
>Message for pkg-1.5.4:
>If you are upgrading from the old package format, first run:
>
>  # pkg2ng
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/sbin/pkg - found
>===>   Returning to build of py27-scikit-sparse-0.2_1
>===========================================================================
>=======================<phase: fetch-depends  >============================
>===========================================================================
>=======================<phase: fetch          >============================
>===>  License BSD2CLAUSE accepted by the user
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by py27-scikit-sparse-0.2_1 for building
>===========================================================================
>=======================<phase: checksum       >============================
>===>  License BSD2CLAUSE accepted by the user
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by py27-scikit-sparse-0.2_1 for building
>=> SHA256 Checksum OK for scikits.sparse-0.2.tar.gz.
>===========================================================================
>=======================<phase: extract-depends>============================
>===========================================================================
>=======================<phase: extract        >============================
>===>  License BSD2CLAUSE accepted by the user
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by py27-scikit-sparse-0.2_1 for building
>===>  Extracting for py27-scikit-sparse-0.2_1
>=> SHA256 Checksum OK for scikits.sparse-0.2.tar.gz.
>===========================================================================
>=======================<phase: patch-depends  >============================
>===========================================================================
>=======================<phase: patch          >============================
>===>  Patching for py27-scikit-sparse-0.2_1
>===>  Applying FreeBSD patches for py27-scikit-sparse-0.2_1
>===========================================================================
>=======================<phase: build-depends  >============================
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found
>===>   Installing existing package /packages/All/py27-numpy-1.9.2,1.txz
>[101amd64-default-python27] Installing py27-numpy-1.9.2,1...
>[101amd64-default-python27] `-- Installing blas-3.5.0_3...
>[101amd64-default-python27] |   `-- Installing gcc-4.8.4_3...
>[101amd64-default-python27] |   | `-- Installing binutils-2.25...
>[101amd64-default-python27] |   |   `-- Installing gettext-runtime-0.19.4...
>[101amd64-default-python27] |   |   | `-- Installing indexinfo-0.2.3...
>[101amd64-default-python27] |   |   | `-- Extracting indexinfo-0.2.3: .... done
>[101amd64-default-python27] |   |   `-- Extracting gettext-runtime-0.19.4: .......... done
>[101amd64-default-python27] |   | `-- Extracting binutils-2.25: .......... done
>[101amd64-default-python27] |   | `-- Installing gcc-ecj-4.5...
>[101amd64-default-python27] |   | `-- Extracting gcc-ecj-4.5: . done
>[101amd64-default-python27] |   | `-- Installing gmp-5.1.3_2...
>[101amd64-default-python27] |   | `-- Extracting gmp-5.1.3_2: .......... done
>[101amd64-default-python27] |   | `-- Installing mpc-1.0.3...
>[101amd64-default-python27] |   |   `-- Installing mpfr-3.1.2_2...
>[101amd64-default-python27] |   |   `-- Extracting mpfr-3.1.2_2: .......... done
>[101amd64-default-python27] |   | `-- Extracting mpc-1.0.3: ...... done
>[101amd64-default-python27] |   `-- Extracting gcc-4.8.4_3: .......... done
>[101amd64-default-python27] `-- Extracting blas-3.5.0_3: ....... done
>[101amd64-default-python27] `-- Installing lapack-3.5.0...
>[101amd64-default-python27] `-- Extracting lapack-3.5.0: .......... done
>[101amd64-default-python27] `-- Installing py27-setuptools27-17.0...
>[101amd64-default-python27] |   `-- Installing python27-2.7.10...
>[101amd64-default-python27] |   | `-- Installing libffi-3.2.1...
>[101amd64-default-python27] |   | `-- Extracting libffi-3.2.1: .......... done
>[101amd64-default-python27] |   `-- Extracting python27-2.7.10: .......... done
>[101amd64-default-python27] `-- Extracting py27-setuptools27-17.0: .......... done
>[101amd64-default-python27] `-- Installing suitesparse-4.0.2_4...
>[101amd64-default-python27] |   `-- Installing openblas-0.2.14,1...
>[101amd64-default-python27] |   `-- Extracting openblas-0.2.14,1: ......... done
>[101amd64-default-python27] `-- Extracting suitesparse-4.0.2_4: .......... done
>[101amd64-default-python27] Extracting py27-numpy-1.9.2,1: .......... done
>Message for gcc-4.8.4_3:
>To ensure binaries built with this toolchain find appropriate versions
>of the necessary run-time libraries, you may want to link using
>
>  -Wl,-rpath=/usr/local/lib/gcc48
>
>For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
>transparently.
>Message for python27-2.7.10:
>=====================================================================
>
>Note that some standard Python modules are provided as separate ports
>as they require additional dependencies. They are available as:
>
>bsddb           databases/py-bsddb
>gdbm            databases/py-gdbm
>sqlite3         databases/py-sqlite3
>tkinter         x11-toolkits/py-tkinter
>
>=====================================================================
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
>===>   Returning to build of py27-scikit-sparse-0.2_1
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - not found
>===>   Installing existing package /packages/All/py27-scipy-0.15.1_1.txz
>[101amd64-default-python27] Installing py27-scipy-0.15.1_1...
>[101amd64-default-python27] `-- Installing swig13-1.3.40_1...
>[101amd64-default-python27] `-- Extracting swig13-1.3.40_1: .......... done
>[101amd64-default-python27] Extracting py27-scipy-0.15.1_1: .......... done
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - found
>===>   Returning to build of py27-scikit-sparse-0.2_1
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: cython>0 - not found
>===>   Installing existing package /packages/All/cython-0.22.txz
>[101amd64-default-python27] Installing cython-0.22...
>[101amd64-default-python27] Extracting cython-0.22: .......... done
>===>   py27-scikit-sparse-0.2_1 depends on package: cython>0 - found
>===>   Returning to build of py27-scikit-sparse-0.2_1
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/as - found
>===========================================================================
>=======================<phase: lib-depends    >============================
>===>   py27-scikit-sparse-0.2_1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so)
>===========================================================================
>====>> Recording filesystem state for prebuild... done
>=======================<phase: configure      >============================
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - found
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: cython>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/as - found
>===>   py27-scikit-sparse-0.2_1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so)
>===>  Configuring for py27-scikit-sparse-0.2_1
>running config
>===========================================================================
>=======================<phase: build          >============================
>===>  Building for py27-scikit-sparse-0.2_1
>running build
>running build_py
>creating build
>creating build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7
>creating build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits
>copying scikits/__init__.py -> build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits
>creating build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse
>copying scikits/sparse/__init__.py -> build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse
>copying scikits/sparse/test_cholmod.py -> build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse
>running build_ext
>cythoning scikits/sparse/cholmod.pyx to scikits/sparse/cholmod.c
>warning: scikits/sparse/cholmod.pyx:32:8: 'stdlib' is deprecated, use 'libc.stdlib'
>warning: scikits/sparse/cholmod.pyx:33:8: 'python' is deprecated, use 'cpython'
>warning: scikits/sparse/cholmod.pyx:129:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>warning: scikits/sparse/cholmod.pyx:129:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>warning: scikits/sparse/cholmod.pyx:131:13: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>warning: scikits/sparse/cholmod.pyx:131:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>building 'scikits.sparse.cholmod' extension
>creating build/temp.freebsd-10.1-RELEASE-p9-amd64-2.7
>creating build/temp.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits
>creating build/temp.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse
>cc -DNDEBUG -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c scikits/sparse/cholmod.c -o build/temp.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse/cholmod.o
>In file included from scikits/sparse/cholmod.c:251:
>In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
>In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:
>/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>#warning "Using deprecated NumPy API, disable it by " \
> ^
>scikits/sparse/cholmod.c:3064:39: warning: incompatible pointer types assigning to 'void (*)(int, const char *, int, const char *)' from 'void (*)(int, char *, int, char *)' [-Wincompatible-pointer-types]
>  __pyx_v_self->_common.error_handler = ((void (*)(int, char *, int, char *))__pyx_f_7scikits_6sparse_7cholmod__error_handler);
>                                      ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>2 warnings generated.
>cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing build/temp.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse/cholmod.o -L/usr/local/lib -lcholmod -lpython2.7 -o build/lib.freebsd-10.1-RELEASE-p9-amd64-2.7/scikits/sparse/cholmod.so
>===========================================================================
>====>> Checking for filesystem violations... done
>=======================<phase: run-depends    >============================
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - found
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===========================================================================
>====>> Recording filesystem state for prestage... done
>=======================<phase: stage          >============================
>===>  Staging for py27-scikit-sparse-0.2_1
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - found
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so)
>===>   Generating temporary packing list
>running install
>running build
>running build_py
>running build_ext
>skipping 'scikits/sparse/cholmod.c' Cython extension (up-to-date)
>running install_lib
>Skipping installation of /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/__init__.py (namespace package)
>copying scikits/sparse/__init__.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/sparse
>copying scikits/sparse/cholmod.so -> /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/sparse
>copying scikits/sparse/test_cholmod.py -> /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/sparse
>byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/sparse/__init__.py to __init__.pyc
>byte-compiling /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits/sparse/test_cholmod.py to test_cholmod.pyc
>writing byte-compilation script '/tmp/tmpW0LbRD.py'
>/usr/local/bin/python2.7 -O /tmp/tmpW0LbRD.py
>removing /tmp/tmpW0LbRD.py
>running install_egg_info
>running egg_info
>writing requirements to scikits.sparse.egg-info/requires.txt
>writing scikits.sparse.egg-info/PKG-INFO
>writing namespace_packages to scikits.sparse.egg-info/namespace_packages.txt
>writing top-level names to scikits.sparse.egg-info/top_level.txt
>writing dependency_links to scikits.sparse.egg-info/dependency_links.txt
>reading manifest file 'scikits.sparse.egg-info/SOURCES.txt'
>reading manifest template 'MANIFEST.in'
>warning: no files found matching 'COPYING'
>no previously-included directories found matching 'doc/_build'
>warning: no previously-included files matching '*~' found anywhere in distribution
>warning: no previously-included files matching '*.so' found anywhere in distribution
>warning: no previously-included files matching '*.pyc' found anywhere in distribution
>writing manifest file 'scikits.sparse.egg-info/SOURCES.txt'
>Copying scikits.sparse.egg-info to /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits.sparse-0.2-py2.7.egg-info
>Installing /wrkdirs/usr/ports/science/py-scikit-sparse/work/stage/usr/local/lib/python2.7/site-packages/scikits.sparse-0.2-py2.7-nspkg.pth
>running install_scripts
>writing list of installed files to '/wrkdirs/usr/ports/science/py-scikit-sparse/work/.PLIST.pymodtmp'
>====> Compressing man pages (compress-man)
>===========================================================================
>====> Running Q/A tests (stage-qa)
>Warning: 'lib/python2.7/site-packages/scikits/sparse/cholmod.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD}
>====> Checking for pkg-plist issues (check-plist)
>===> Parsing plist
>===> Checking for items in STAGEDIR missing from pkg-plist
>===> Checking for items in pkg-plist which are not in STAGEDIR
>===> No pkg-plist issues found (check-plist)
>====>> Checking for staging violations... done
>=======================<phase: package        >============================
>===>  Building package for py27-scikit-sparse-0.2_1
>===========================================================================
>=======================<phase: install-mtree  >============================
>===========================================================================
>====>> Recording filesystem state for preinst... done
>=======================<phase: install        >============================
>===>  Installing for py27-scikit-sparse-0.2_1
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/lib/python2.7/site-packages/scipy/version.py - found
>===>   py27-scikit-sparse-0.2_1 depends on executable: gfortran48 - found
>===>   py27-scikit-sparse-0.2_1 depends on package: py27-setuptools27>0 - found
>===>   py27-scikit-sparse-0.2_1 depends on file: /usr/local/bin/python2.7 - found
>===>   py27-scikit-sparse-0.2_1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so)
>===>  Checking if py27-scikit-sparse already installed
>===>   Registering installation for py27-scikit-sparse-0.2_1
>[101amd64-default-python27] Installing py27-scikit-sparse-0.2_1...
>===========================================================================
>====>> Checking shared library dependencies
> 0x0000000000000001 (NEEDED)             Shared library: [libc.so.7]
> 0x0000000000000001 (NEEDED)             Shared library: [libcholmod.so.1]
> 0x0000000000000001 (NEEDED)             Shared library: [libpython2.7.so.1]
>=======================<phase: deinstall      >============================
>===>  Deinstalling for py27-scikit-sparse
>===>   Deinstalling py27-scikit-sparse-0.2_1
>Updating database digests format: .......... done
>Checking integrity... done (0 conflicting)
>Deinstallation has been requested for the following 1 packages (of 0 packages in the universe):
>
>Installed packages to be REMOVED:
>	py27-scikit-sparse-0.2_1
>
>The operation will free 224 KiB.
>[101amd64-default-python27] [1/1] Deinstalling py27-scikit-sparse-0.2_1...
>[101amd64-default-python27] [1/1] Deleting files for py27-scikit-sparse-0.2_1: .......... done
>===========================================================================
>====>> Checking for extra files and directories
>[00:00:35] ====>> Installing from package
>[101amd64-default-python27] Installing py27-scikit-sparse-0.2_1...
>[101amd64-default-python27] Extracting py27-scikit-sparse-0.2_1: .......... done
>[00:00:35] ====>> Cleaning up
>===>  Cleaning for py27-scikit-sparse-0.2_1
>[00:00:35] ====>> Deinstalling package
>Updating database digests format: . done
>Checking integrity... done (0 conflicting)
>Deinstallation has been requested for the following 1 packages (of 0 packages in the universe):
>
>Installed packages to be REMOVED:
>	py27-scikit-sparse-0.2_1
>
>The operation will free 224 KiB.
>[101amd64-default-python27] [1/1] Deinstalling py27-scikit-sparse-0.2_1...
>[101amd64-default-python27] [1/1] Deleting files for py27-scikit-sparse-0.2_1: .......... done
>build of science/py-scikit-sparse ended at Sat Jul  4 20:50:13 EDT 2015
>build time: 00:00:30
>[00:00:35] ====>> Cleaning up
>[00:00:35] ====>> Umounting file systems

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Attachments on bug 201346: 158351 | 158356 | 158357 | 158358