Attachment 161231 Details for Bug 203233 – SHAR archive

SHAR archive

cdbfasta-shar.txt (text/plain), 3.13 KB, created by Jason W. Bacon on 2015-09-21 13:36:14 UTC

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Creator: Jason W. Bacon

Created: 2015-09-21 13:36:14 UTC

Size: 3.13 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	cdbfasta
>#	cdbfasta/files
>#	cdbfasta/files/patch-Makefile
>#	cdbfasta/Makefile
>#	cdbfasta/distinfo
>#	cdbfasta/pkg-descr
>#
>echo c - cdbfasta
>mkdir -p cdbfasta > /dev/null 2>&1
>echo c - cdbfasta/files
>mkdir -p cdbfasta/files > /dev/null 2>&1
>echo x - cdbfasta/files/patch-Makefile
>sed 's/^X//' >cdbfasta/files/patch-Makefile << '3c2ba58f9af851cdad98b0a1e266b36e'
>X--- Makefile.orig	2009-12-03 20:17:51 UTC
>X+++ Makefile
>X@@ -18,7 +18,10 @@ else
>X     MARCH = 
>X endif    
>X 
>X-CC      := g++
>X+# Use the correct compiler (CXX, not CC) and respect the environment
>X+# by using ?=
>X+CXX	?= g++
>X+
>X BASEFLAGS  = -Wall ${SEARCHDIRS} $(MARCH) -DENABLE_COMPRESSION=0 -D_FILE_OFFSET_BITS=64 \
>X -D_LARGEFILE_SOURCE -fno-exceptions -fno-rtti -fno-strict-aliasing \
>X -D_REENTRANT 
>X@@ -33,30 +36,30 @@ else
>X endif
>X 
>X ifeq ($(findstring nommap,$(MAKECMDGOALS)),)
>X-  CFLAGS = $(DBGFLAGS) $(BASEFLAGS)
>X+  CXXFLAGS = $(DBGFLAGS) $(BASEFLAGS)
>X else
>X-  CFLAGS = $(DBGFLAGS) $(BASEFLAGS) -DNO_MMAP
>X+  CXXFLAGS = $(DBGFLAGS) $(BASEFLAGS) -DNO_MMAP
>X endif
>X 
>X %.o : %.c
>X-	${CC} ${CFLAGS} -c $< -o $@
>X+	${CXX} ${CXXFLAGS} -c $< -o $@
>X 
>X %.o : %.cc
>X-	${CC} ${CFLAGS} -c $< -o $@
>X+	${CXX} ${CXXFLAGS} -c $< -o $@
>X 
>X %.o : %.C
>X-	${CC} ${CFLAGS} -c $< -o $@
>X+	${CXX} ${CXXFLAGS} -c $< -o $@
>X 
>X %.o : %.cpp
>X-	${CC} ${CFLAGS} -c $< -o $@
>X+	${CXX} ${CXXFLAGS} -c $< -o $@
>X 
>X %.o : %.cxx
>X-	${CC} ${CFLAGS} -c $< -o $@
>X+	${CXX} ${CXXFLAGS} -c $< -o $@
>X 
>X # C/C++ linker
>X 
>X-LINKER    := g++
>X-LDFLAGS    = -lz
>X+LINKER	:= ${CXX}
>X+LDFLAGS	= -lz
>X #if ENABLE_COMPRESSION is not needed,
>X # LDFLAGS = 
>X 
>3c2ba58f9af851cdad98b0a1e266b36e
>echo x - cdbfasta/Makefile
>sed 's/^X//' >cdbfasta/Makefile << '471d0b565beb3ffab45f9154770d423b'
>X# Created by: Dan Siercks <dsiercks@uwm.edu>
>X# $FreeBSD$
>X
>XPORTNAME=	cdbfasta
>XPORTVERSION=	2010.07.22
>XCATEGORIES=	biology
>XMASTER_SITES=	http://acadix.biz/Ports/distfiles/ \
>X		http://personalpages.tds.net/~jwbacon/Ports/distfiles/
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Fast indexing and retrieval of FASTA records from flat file databases
>X
>X# LICENSE=	unspecified
>X
>XWRKSRC=		${WRKDIR}/${PORTNAME}
>X
>XUSES=		gmake
>X
>XPLIST_FILES=	bin/cdbfasta bin/cdbyank
>X
>Xdo-install:
>X	${INSTALL_PROGRAM} ${WRKSRC}/cdbfasta ${STAGEDIR}${PREFIX}/bin
>X	${INSTALL_PROGRAM} ${WRKSRC}/cdbyank ${STAGEDIR}${PREFIX}/bin
>X
>X.include <bsd.port.mk>
>471d0b565beb3ffab45f9154770d423b
>echo x - cdbfasta/distinfo
>sed 's/^X//' >cdbfasta/distinfo << '9f73e463de9231185d579424a0ca8cda'
>XSHA256 (cdbfasta-2010.07.22.tar.gz) = 68767e8b2fb9de5a6d68ee16df73293f65e02f05cf2f747a9dd6b8854766722c
>XSIZE (cdbfasta-2010.07.22.tar.gz) = 59735
>9f73e463de9231185d579424a0ca8cda
>echo x - cdbfasta/pkg-descr
>sed 's/^X//' >cdbfasta/pkg-descr << '447110fef27ffc2cba0fb76c07db3f3a'
>XFast indexing and retrieval of FASTA records from flat file data bases.
>X
>XWWW: http://sourceforge.net/projects/cdbfasta/
>447110fef27ffc2cba0fb76c07db3f3a
>exit
>

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