Attachment 164076 Details for Bug 205220 – science_pynn.diff

[patch] science_pynn.diff

science_pynn.diff (text/plain), 12.58 KB, created by tkato432 on 2015-12-10 18:42:15 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: tkato432

Created: 2015-12-10 18:42:15 UTC

Size: 12.58 KB

patch

obsolete

>diff -urN /usr/ports/science/pynn/Makefile science/pynn/Makefile
>--- /usr/ports/science/pynn/Makefile	2015-08-24 03:50:02.797076000 +0900
>+++ science/pynn/Makefile	2015-12-11 00:00:00.000000000 +0900
>@@ -2,8 +2,7 @@
> # $FreeBSD: head/science/pynn/Makefile 371453 2014-10-24 16:50:42Z mva $
> 
> PORTNAME=	pynn
>-PORTVERSION=	0.7.5
>-PORTREVISION=	3
>+PORTVERSION=	0.8.0
> CATEGORIES=	science python
> MASTER_SITES=	CHEESESHOP
> PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
>@@ -12,11 +11,18 @@
> MAINTAINER=	ports@FreeBSD.org
> COMMENT=	Simulator-independent language for building neuronal network models
> 
>+LICENSE=	CeCILL
>+LICENSE_NAME=	CeCILL Free Software License Version 2.0
>+LICENSE_FILE=	${WRKSRC}/LICENSE
>+LICENSE_PERMS=	dist-mirror dist-sell pkg-mirror pkg-sell auto-accept
>+
> BUILD_DEPENDS=	${PYNUMPY}
> RUN_DEPENDS=	${PYNUMPY}
> 
>+NO_ARCH=	yes
>+
> USES=		python
>-USE_PYTHON=	distutils
>+USE_PYTHON=	distutils autoplist
> PYDISTUTILS_PKGNAME=	PyNN
> 
> .include <bsd.port.mk>
>diff -urN /usr/ports/science/pynn/distinfo science/pynn/distinfo
>--- /usr/ports/science/pynn/distinfo	2015-08-24 03:50:02.794206000 +0900
>+++ science/pynn/distinfo	2015-12-11 00:00:00.000000000 +0900
>@@ -1,2 +1,2 @@
>-SHA256 (PyNN-0.7.5.tar.gz) = 15f75f422f3b71c6129ecef23f29d8baeb3ed6502e7a321b8a2596c78ef7e03c
>-SIZE (PyNN-0.7.5.tar.gz) = 263487
>+SHA256 (PyNN-0.8.0.tar.gz) = bb82750218b7246b6d76b3d886f12197143b8ae61631658b60a60c362b2b22b5
>+SIZE (PyNN-0.8.0.tar.gz) = 287942
>diff -urN /usr/ports/science/pynn/pkg-descr science/pynn/pkg-descr
>--- /usr/ports/science/pynn/pkg-descr	2015-08-24 03:50:02.795100000 +0900
>+++ science/pynn/pkg-descr	2015-12-11 00:00:00.000000000 +0900
>@@ -1,4 +1,4 @@
>-PyNN(pronounced 'pine') is a simulator-independent language for
>+PyNN (pronounced 'pine') is a simulator-independent language for
> building neuronal network models. 
> 
>-WWW: http://neuralensemble.org/trac/PyNN
>+WWW: http://neuralensemble.org/PyNN
>diff -urN /usr/ports/science/pynn/pkg-plist science/pynn/pkg-plist
>--- /usr/ports/science/pynn/pkg-plist	2015-08-24 03:50:02.796025000 +0900
>+++ science/pynn/pkg-plist	1970-01-01 09:00:00.000000000 +0900
>@@ -1,204 +0,0 @@
>-%%PYTHON_SITELIBDIR%%/pyNN/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/brian/standardmodels/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/common.py
>-%%PYTHON_SITELIBDIR%%/pyNN/common.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/common.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors2.py
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors2.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/connectors2.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/core.py
>-%%PYTHON_SITELIBDIR%%/pyNN/core.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/core.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/assembly_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/modeltype_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/population_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/population_old.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/populationview_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/projection_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/cheetah/synapsedynamics_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/assembly_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/modeltype_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/population_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/population_old.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/populationview_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/projection_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/jinja2/synapsedynamics_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/assembly_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/modeltype_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/population_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/populationview_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/projection_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/descriptions/templates/string/synapsedynamics_default.txt
>-%%PYTHON_SITELIBDIR%%/pyNN/errors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/errors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/errors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/models.py
>-%%PYTHON_SITELIBDIR%%/pyNN/models.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/models.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/multisim.py
>-%%PYTHON_SITELIBDIR%%/pyNN/multisim.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/multisim.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/standardmodels/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml2.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml2.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuroml2.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nineml.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nineml.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nineml.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/adexp.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/alphaisyn.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/alphasyn.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/expisyn.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/gsfa_grr.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/hh_traub.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/netstim2.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/refrac.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/reset.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/stdwa_guetig.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/stdwa_softlimits.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/stdwa_songabbott.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/stdwa_symm.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/tmgsyn.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/tmisyn.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/nmodl/vecstim.mod
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/neuron/standardmodels/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/pcsim/standardmodels/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/random.py
>-%%PYTHON_SITELIBDIR%%/pyNN/random.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/random.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/files.py
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/files.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/recording/files.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/space.py
>-%%PYTHON_SITELIBDIR%%/pyNN/space.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/space.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/__init__.py
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/__init__.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/cells.py
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/cells.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/cells.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/synapses.py
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/synapses.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/standardmodels/synapses.pyo
>-%%PYTHON_SITELIBDIR%%/pyNN/utility.py
>-%%PYTHON_SITELIBDIR%%/pyNN/utility.pyc
>-%%PYTHON_SITELIBDIR%%/pyNN/utility.pyo

Actions: View | Diff

Attachments on bug 205220: 164076