Attachment 16869 Details for Bug 30783 – file.shar

file.shar

file.shar (text/plain), 4.48 KB, created by Tony Maher on 2001-09-24 10:30:01 UTC

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Creator: Tony Maher

Created: 2001-09-24 10:30:01 UTC

Size: 4.48 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	nclever
>#	nclever/files
>#	nclever/files/patch-main
>#	nclever/files/patch-makefile
>#	nclever/pkg-descr
>#	nclever/distinfo
>#	nclever/Makefile
>#	nclever/pkg-comment
>#	nclever/pkg-plist
>#
>echo c - nclever
>mkdir -p nclever > /dev/null 2>&1
>echo c - nclever/files
>mkdir -p nclever/files > /dev/null 2>&1
>echo x - nclever/files/patch-main
>sed 's/^X//' >nclever/files/patch-main << 'END-of-nclever/files/patch-main'
>X--- main.c.orig	Mon Sep 24 16:34:16 2001
>X+++ main.c	Mon Sep 24 16:37:26 2001
>X@@ -358,7 +358,7 @@
>X /* Read a line from stdin */
>X static Boolean GetCommand(void)
>X {
>X-    if (!gets(Command)) return(FALSE);
>X+    if (!fgets(Command,MAXLINELEN-1,stdin)) return(FALSE);
>X     if (EchoCommands) fprintf(CmdStream,"%s\n",Command);
>X     return(TRUE);
>X }
>END-of-nclever/files/patch-main
>echo x - nclever/files/patch-makefile
>sed 's/^X//' >nclever/files/patch-makefile << 'END-of-nclever/files/patch-makefile'
>X--- Makefile.orig	Thu Dec  7 11:11:31 2000
>X+++ Makefile	Thu Dec  7 11:34:11 2000
>X@@ -29,7 +29,8 @@
>X # NCBI librairies are needed.
>X 
>X # Set the correct path to the NCBI package
>X-NCBI    = /usr/local/lib/NCBI
>X+NCBILIB = /usr/local/lib/ncbi
>X+NCBIINC = /usr/local/include/ncbi
>X 
>X # Set the name of your ANSI C compiler
>X CC      = gcc
>X@@ -39,7 +40,7 @@
>X LIBSNCBI  = -lncbiNacc -lnetentr -lncbicdr -lncbiobj -lnetcli -lncbi
>X # System linking libraries (these are used under Solaris 2.6;
>X # adjust according to your site).
>X-LIBSSYS   = -lm -lsocket -lnsl -lxnet
>X+LIBSSYS   = -lm
>X 
>X #
>X # Nothing to adjust below this line !
>X@@ -50,20 +51,20 @@
>X all: nclever
>X 
>X nclever: $(OBJS)
>X-	$(CC) $(CCFLAGS) -o nclever -L$(NCBI)/lib $(OBJS) $(LIBSNCBI) $(LIBSSYS)
>X+	$(CC) $(CCFLAGS) -o nclever -L$(NCBILIB) $(OBJS) $(LIBSNCBI) $(LIBSSYS)
>X 	strip nclever
>X 
>X main.o: main.c main.h
>X-	$(CC) $(CCFLAGS) -c -I$(NCBI)/include main.c
>X+	$(CC) $(CCFLAGS) -c -I$(NCBIINC) main.c
>X 
>X lists.o: lists.c main.h
>X-	$(CC) $(CCFLAGS) -c -I$(NCBI)/include lists.c
>X+	$(CC) $(CCFLAGS) -c -I$(NCBIINC) lists.c
>X 
>X print.o: print.c main.h
>X-	$(CC) $(CCFLAGS) -c -I$(NCBI)/include print.c
>X+	$(CC) $(CCFLAGS) -c -I$(NCBIINC) print.c
>X 
>X entinfo.o: entinfo.c main.h
>X-	$(CC) $(CCFLAGS) -c -I$(NCBI)/include entinfo.c
>X+	$(CC) $(CCFLAGS) -c -I$(NCBIINC) entinfo.c
>X 
>X clean:
>X 	rm *.o
>END-of-nclever/files/patch-makefile
>echo x - nclever/pkg-descr
>sed 's/^X//' >nclever/pkg-descr << 'END-of-nclever/pkg-descr'
>XNClever is a character-based version of NCBI's Entrez program. It is an
>Xinteractive tool that allows easy browsing of the Entrez database.
>X
>XMore information available at:
>XWWW: ftp://megasun.bch.umontreal.ca/pub/nclever
>X
>X--
>XTony Maher <tonym@biolateral.com.au>
>END-of-nclever/pkg-descr
>echo x - nclever/distinfo
>sed 's/^X//' >nclever/distinfo << 'END-of-nclever/distinfo'
>XMD5 (nclever4.0.tar.Z) = ef1c97fe8769b41e0fa8773848d70836
>END-of-nclever/distinfo
>echo x - nclever/Makefile
>sed 's/^X//' >nclever/Makefile << 'END-of-nclever/Makefile'
>X# New ports collection makefile for:	nclever
>X# Date created:				17 August 2001
>X# Whom:			 		Tony Maher
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	nclever
>XPORTVERSION=	4.0
>XCATEGORIES=	biology
>XMASTER_SITES=	ftp://megasun.bch.umontreal.ca/pub/nclever/
>XDISTNAME=	nclever4.0
>XEXTRACT_SUFX=	.tar.Z
>X
>XMAINTAINER=	tonym@biolateral.com.au
>X
>XBUILD_DEPENDS=	${LOCALBASE}/lib/ncbi/libncbi.a:${PORTSDIR}/biology/ncbi-toolkit
>X
>XDOCDIR=		${PREFIX}/share/doc/${PORTNAME}
>X
>Xdo-install:
>X	@${INSTALL_PROGRAM} ${WRKSRC}/nclever ${PREFIX}/bin
>X.if !defined(NOPORTSDOCS)
>X	@${MKDIR} ${DOCDIR}
>X	@${INSTALL_DATA} ${WRKSRC}/nclever_manual.txt ${DOCDIR}
>X	@${INSTALL_DATA} ${WRKSRC}/nclever.citation ${DOCDIR}
>X	@${INSTALL_DATA} ${WRKSRC}/sample_script1.txt ${DOCDIR}
>X	@${INSTALL_DATA} ${WRKSRC}/sample_script2.txt ${DOCDIR}
>X.endif
>X
>X.include <bsd.port.mk>
>END-of-nclever/Makefile
>echo x - nclever/pkg-comment
>sed 's/^X//' >nclever/pkg-comment << 'END-of-nclever/pkg-comment'
>XNClever is a character-based version of NCBI's Entrez program
>END-of-nclever/pkg-comment
>echo x - nclever/pkg-plist
>sed 's/^X//' >nclever/pkg-plist << 'END-of-nclever/pkg-plist'
>Xbin/nclever
>Xshare/doc/nclever/nclever.citation
>Xshare/doc/nclever/nclever_manual.txt
>Xshare/doc/nclever/sample_script1.txt
>Xshare/doc/nclever/sample_script2.txt
>X@dirrm share/doc/nclever
>END-of-nclever/pkg-plist
>exit

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Attachments on bug 30783: 16869