Attachment 181883 Details for Bug 218745 – shar

shar

py-pysam.shar (text/plain), 2.67 KB, created by Yuri Victorovich on 2017-04-19 07:09:00 UTC

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Creator: Yuri Victorovich

Created: 2017-04-19 07:09:00 UTC

Size: 2.67 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	biology/py-pysam
>#	biology/py-pysam/pkg-descr
>#	biology/py-pysam/distinfo
>#	biology/py-pysam/Makefile
>#	biology/py-pysam/files
>#	biology/py-pysam/files/patch-setup.py
>#
>echo c - biology/py-pysam
>mkdir -p biology/py-pysam > /dev/null 2>&1
>echo x - biology/py-pysam/pkg-descr
>sed 's/^X//' >biology/py-pysam/pkg-descr << '5ebcf5e746a292a41130bd0ba41bbdaa'
>Xpysam is a lightweight wrapper of the htslib C-API and provides facilities to
>Xread and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
>Xto the command line functionality of the samtools and bcftools packages. The
>Xmodule supports compression and random access through indexing.
>X
>XThis module provides a low-level wrapper around the htslib C-API as using
>Xcython and a high-level API for convenient access to the data within standard
>Xgenomic file formats.
>X
>XWWW: https://pypi.python.org/pypi/pysam
>5ebcf5e746a292a41130bd0ba41bbdaa
>echo x - biology/py-pysam/distinfo
>sed 's/^X//' >biology/py-pysam/distinfo << '8f817ecd38ac2dd10a566a157447f772'
>XTIMESTAMP = 1492580723
>XSHA256 (pysam-0.11.tar.gz) = 815c8a6150c5fe21df227e730dd57e4212984ae568854fcc5873e243072dcbad
>XSIZE (pysam-0.11.tar.gz) = 2425484
>8f817ecd38ac2dd10a566a157447f772
>echo x - biology/py-pysam/Makefile
>sed 's/^X//' >biology/py-pysam/Makefile << 'ad4fded8a75a6324722602cc98edd81a'
>X# Created by: Yuri Victorovich <yuri@rawbw.com>
>X# $FreeBSD$
>X
>XPORTNAME=	pysam
>XPORTVERSION=	0.11
>XCATEGORIES=	biology python
>XMASTER_SITES=	CHEESESHOP
>XPKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
>X
>XMAINTAINER=	yuri@rawbw.com
>XCOMMENT=	Python module for reading, manipulating and writing genomic data sets
>X
>XLICENSE=	MIT
>XLICENSE_FILE=	${WRKSRC}/COPYING
>X
>XBUILD_DEPENDS=	cython:lang/cython
>XRUN_DEPENDS=	cython:lang/cython
>X
>XUSES=		gmake python
>XUSE_PYTHON=	autoplist distutils
>X
>X.include <bsd.port.mk>
>ad4fded8a75a6324722602cc98edd81a
>echo c - biology/py-pysam/files
>mkdir -p biology/py-pysam/files > /dev/null 2>&1
>echo x - biology/py-pysam/files/patch-setup.py
>sed 's/^X//' >biology/py-pysam/files/patch-setup.py << 'ed0735620e8f3565c27a223df0d17666'
>X--- setup.py.orig	2017-04-19 05:48:10 UTC
>X+++ setup.py
>X@@ -60,7 +60,7 @@ def run_configure(option):
>X 
>X 
>X def run_make_print_config():
>X-    stdout = subprocess.check_output(["make", "-s", "print-config"])
>X+    stdout = subprocess.check_output(["gmake", "-s", "print-config"])
>X     if IS_PYTHON3:
>X         stdout = stdout.decode("ascii")
>X 
>ed0735620e8f3565c27a223df0d17666
>exit
>

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Attachments on bug 218745: 181883