Attachment 196896 Details for Bug 231186 – gfan shar file

gfan shar file

gfan.shar (text/plain), 10.68 KB, created by Lorenzo Salvadore on 2018-09-05 20:31:10 UTC

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Creator: Lorenzo Salvadore

Created: 2018-09-05 20:31:10 UTC

Size: 10.68 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	gfan
>#	gfan/pkg-message
>#	gfan/pkg-descr
>#	gfan/files
>#	gfan/files/patch-testsuite_0008PolynomialSetUnion_output
>#	gfan/files/patch-Makefile
>#	gfan/distinfo
>#	gfan/pkg-plist
>#	gfan/Makefile
>#
>echo c - gfan
>mkdir -p gfan > /dev/null 2>&1
>echo x - gfan/pkg-message
>sed 's/^X//' >gfan/pkg-message << '91632349f06a8a96a2a0a8da4b738252'
>XGfan can also be linked to Sage, Singular or Soplex. I refrain to
>Xinclude those optional dependencies because Sage and Singular support
>Xis not documented in gfan's manual and Soplex has a very restrictive
>Xlicense (you can use or distribute it only if you are a member of a
>Xnoncommercial and academic institution).
>X
>XIf you feel you need any of those optional dependencies, please let
>Xme know and I will do my best to provide it as fast as possible.
>X
>XThe mantainer.
>91632349f06a8a96a2a0a8da4b738252
>echo x - gfan/pkg-descr
>sed 's/^X//' >gfan/pkg-descr << 'da2b260cc875b44f233a17b7c262ca7f'
>XGfan is a software package for computing Groebner fans and tropical
>Xvarieties. These are polyhedral fans associated to polynomial ideals.
>XThe maximal cones of a Groebner fan are in bijection with the marked
>Xreduced Groebner bases of its defining ideal. The software computes
>Xall marked reduced Groebner bases of an ideal. Their union is a
>Xuniversal Greobner basis. The tropical variety of a polynomial ideal
>Xis a certain subcomplex of the Groebner fan. Gfan contains algorithms
>Xfor computing this complex for general ideals and specialized
>Xalgorithms for tropical curves, tropical hypersurfaces and tropical
>Xvarieties of prime ideals.  In addition to the above core functions
>Xthe package contains many tools which are useful in the study of
>XGroebner bases, initial ideals and tropical geometry.
>X
>XThis port provides gfan together with some handy symlinks. The static
>Xlibrary libgfan.a is provided by the port math/gfanlib.
>X
>XWWW: http://home.math.au.dk/jensen/software/gfan/gfan.html
>da2b260cc875b44f233a17b7c262ca7f
>echo c - gfan/files
>mkdir -p gfan/files > /dev/null 2>&1
>echo x - gfan/files/patch-testsuite_0008PolynomialSetUnion_output
>sed 's/^X//' >gfan/files/patch-testsuite_0008PolynomialSetUnion_output << '6b50217fb78db38d6abf53d82eb5827b'
>X--- testsuite/0008PolynomialSetUnion/output.orig	2013-09-23 12:03:23 UTC
>X+++ testsuite/0008PolynomialSetUnion/output
>X@@ -1,62 +1,62 @@
>X-{
>X+Q[a,b,c]
>X+a*b-c^6,
>X+a*b^2-c^3,
>X+a*b^4-b,
>X+a*c-b^6,
>X+a*c^2-b,
>X+a*c^6-c,
>X+a-b^11,
>X+a-b^2*c,
>X+a-c^9,
>X a^11-c,
>X a^15-a,
>X+a^2*b-c,
>X a^2*b^3-a,
>X+a^2*c-b^3,
>X a^2-b^8,
>X-a^2*b-c,
>X a^2-c^4,
>X-a^2*c-b^3,
>X-a^3-b^5,
>X-a^3-b*c^2,
>X a^3*c^2-c}
>X-a^4-b^2,
>X+a^3-b*c^2,
>X+a^3-b^5,
>X a^4*c-a,
>X+a^4-b^2,
>X a^5-c^3,
>X a^6*b-a,
>X a^6-b*c,
>X a^8-c^2,
>X a^9-b,
>X-a-b^11,
>X-a-b^2*c,
>X-a*b^2-c^3,
>X-a*b^4-b,
>X-a*b-c^6,
>X-a*c^2-b,
>X-a*c^6-c,
>X-a-c^9,
>X-a*c-b^6,
>X+b*c-a^6,
>X+b*c^2-a^3,
>X+b*c^4-c,
>X+b-a*c^2,
>X+b-a^9,
>X+b-c^11,
>X b^11-a,
>X b^15-b,
>X-b^2-a^4,
>X+b^2*c-a,
>X b^2*c^3-b,
>X+b^2-a^4,
>X b^2-c^8,
>X-b^2*c-a,
>X b^3-a^2*c,
>X b^3-c^5,
>X b^4-c^2,
>X b^5-a^3,
>X-b^6-a*c,
>X b^6*c-b,
>X+b^6-a*c,
>X b^8-a^2,
>X b^9-c,
>X-b-a^9,
>X-b-a*c^2,
>X-b-c^11,
>X-b*c^2-a^3,
>X-b*c^4-c,
>X-b*c-a^6,
>X+c-a^11,
>X+c-a^2*b,
>X+c-b^9,
>X c^11-b,
>X c^15-c,
>X c^2-a^8,
>X c^2-b^4,
>X-c^3-a^5,
>X c^3-a*b^2,
>X+c^3-a^5,
>X c^4-a^2,
>X c^5-b^3,
>X c^6-a*b,
>X c^8-b^2,
>X c^9-a,
>X-c-a^11,
>X-c-a^2*b,
>X-c-b^9,
>X-Q[a,b,c]
>X+{
>6b50217fb78db38d6abf53d82eb5827b
>echo x - gfan/files/patch-Makefile
>sed 's/^X//' >gfan/files/patch-Makefile << '1be82adb1319879aaf230d8d3cf189cb'
>X--- Makefile.orig	2017-09-28 13:44:12 UTC
>X+++ Makefile
>X@@ -110,13 +110,13 @@ MKDIR=mkdir -p
>X PREFIX =
>X SHELL       = /bin/sh
>X #ARCH        = LINUX
>X-CC          = $(PREFIX)gcc
>X+CC          ?= $(PREFIX)gcc
>X CLINKER     = $(CC)
>X-CXX         = $(PREFIX)g++
>X+CXX         ?= $(PREFIX)g++
>X CCLINKER    = $(CXX)
>X #OPTFLAGS    = -O2 -DGMPRATIONAL -DNDEBUG
>X # Note that gcc produces wrong code with -O3
>X-OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O2	 #-O3 -fno-guess-branch-probability #-DNDEBUG
>X+#OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O2	 #-O3 -fno-guess-branch-probability #-DNDEBUG
>X #OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O3 -mavx -msse2  -finline-limit=1000 -ffast-math -Wuninitialized # -fno-guess-branch-probability #-DNDEBUG -ftree-vectorizer-verbose=2
>X #OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O1             -fno-guess-branch-probability
>X  #-DNDEBUG
>X@@ -125,9 +125,9 @@ OPTFLAGS    =  -DGMPRATIONAL -Wuninitial
>X #OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O3 -msse2 -ftree-vectorizer-verbose=2 -ffast-math #-DNDEBUG
>X #OPTFLAGS    =  -DGMPRATIONAL -Wuninitialized -fno-omit-frame-pointer -O3 -mavx -msse2 -ftree-vectorizer-verbose=2 -ffast-math #-DNDEBUG
>X 
>X-CFLAGS	  = $(OPTFLAGS) $(GPROFFLAG) $(STACTDUMP_OPTIONS) $(ADDITIONALINCLUDEOPTIONS) -std=c++0x -g $(CDDDEFINE_PREFIX) #-pedantic
>X+CFLAGS	  += $(OPTFLAGS) $(GPROFFLAG) $(STACTDUMP_OPTIONS) $(ADDITIONALINCLUDEOPTIONS) -std=c++0x -g $(CDDDEFINE_PREFIX) #-pedantic
>X #CFLAGS	  = $(OPTFLAGS) $(GPROFFLAG) $(STACTDUMP_OPTIONS) $(ADDITIONALINCLUDEOPTIONS) -D_GLIBCXX_DEBUG -std=c++0x -g $(CDDDEFINE_PREFIX) #-pedantic
>X-CCFLAGS	  = $(CFLAGS)
>X+CCFLAGS	  += $(CFLAGS)
>X FFLAGS	  = $(OPTFLAGS)
>X 
>X CATSOBJECTS =	lp_cdd.o \
>X@@ -394,7 +394,7 @@ EXECS	  = $(MAIN)
>X # (compiling with gcc version 4.7.2 and running gfan _tropicaltraverse on a starting cone for Grassmann3_7)
>X # Either this is a bug in the code or in the compiler. The bug disappears by compiling with -fno-guess-branch-probability
>X src/symmetrictraversal.o: src/symmetrictraversal.cpp
>X-	$(CXX) $(CFLAGS) -fno-guess-branch-probability  -c src/symmetrictraversal.cpp -o src/symmetrictraversal.o
>X+	$(CXX) $(CFLAGS) -c src/symmetrictraversal.cpp -o src/symmetrictraversal.o
>X # If compiling with clang, use the line below instead:
>X #	$(CXX) $(CFLAGS) -c src/symmetrictraversal.cpp -o src/symmetrictraversal.o
>X 
>1be82adb1319879aaf230d8d3cf189cb
>echo x - gfan/distinfo
>sed 's/^X//' >gfan/distinfo << '838c7db7bef3111f0d06aed8fc102125'
>XTIMESTAMP = 1535465532
>XSHA256 (gfan0.6.2.tar.gz) = a674d5e5dc43634397de0d55dd5da3c32bd358d05f72b73a50e62c1a1686f10a
>XSIZE (gfan0.6.2.tar.gz) = 1321059
>838c7db7bef3111f0d06aed8fc102125
>echo x - gfan/pkg-plist
>sed 's/^X//' >gfan/pkg-plist << '3543c6a129a179de8b490c2c76063db6'
>Xbin/gfan
>Xbin/gfan_bases
>Xbin/gfan_buchberger
>Xbin/gfan_combinerays
>Xbin/gfan_doesidealcontain
>Xbin/gfan_fancommonrefinement
>Xbin/gfan_fanhomology
>Xbin/gfan_fanisbalanced
>Xbin/gfan_fanlink
>Xbin/gfan_fanproduct
>Xbin/gfan_fansubfan
>Xbin/gfan_genericlinearchange
>Xbin/gfan_groebnercone
>Xbin/gfan_groebnerfan
>Xbin/gfan_homogeneityspace
>Xbin/gfan_homogenize
>Xbin/gfan_initialforms
>Xbin/gfan_interactive
>Xbin/gfan_ismarkedgroebnerbasis
>Xbin/gfan_krulldimension
>Xbin/gfan_latticeideal
>Xbin/gfan_leadingterms
>Xbin/gfan_list
>Xbin/gfan_markpolynomialset
>Xbin/gfan_minkowskisum
>Xbin/gfan_minors
>Xbin/gfan_mixedvolume
>Xbin/gfan_overintegers
>Xbin/gfan_padic
>Xbin/gfan_polynomialsetunion
>Xbin/gfan_render
>Xbin/gfan_renderstaircase
>Xbin/gfan_resultantfan
>Xbin/gfan_saturation
>Xbin/gfan_secondaryfan
>Xbin/gfan_stats
>Xbin/gfan_substitute
>Xbin/gfan_symmetries
>Xbin/gfan_tolatex
>Xbin/gfan_topolyhedralfan
>Xbin/gfan_tropicalbasis
>Xbin/gfan_tropicalbruteforce
>Xbin/gfan_tropicalcurve
>Xbin/gfan_tropicalevaluation
>Xbin/gfan_tropicalfunction
>Xbin/gfan_tropicalhypersurface
>Xbin/gfan_tropicalintersection
>Xbin/gfan_tropicallifting
>Xbin/gfan_tropicallinearspace
>Xbin/gfan_tropicalmultiplicity
>Xbin/gfan_tropicalrank
>Xbin/gfan_tropicalstartingcone
>Xbin/gfan_tropicaltraverse
>Xbin/gfan_tropicalweildivisor
>Xbin/gfan_version
>X%%PORTDOCS%%%%DOCSDIR%%/manual.dvi
>X%%PORTDOCS%%%%DOCSDIR%%/gfan.eps
>X%%PORTDOCS%%%%DOCSDIR%%/nonconst.eps
>X%%PORTDOCS%%%%DOCSDIR%%/polyformat.eps
>X%%PORTDOCS%%%%DOCSDIR%%/staircase.eps
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/2x2of2x3
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/2x2of2x4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/2x2of3x3
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/2x2of4x4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3x3of3x4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3x3of3x5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3x3of3x5.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3x3of4x4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/3x3of4x4sym.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/4x4of4x5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/4x4of5x5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/6x6-subPfaffians
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/commat2x2
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/commat2x2.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclic4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclic5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/examplePaper
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann2_5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann2_5.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann2_6
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann2_6.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann3_6
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/grassmann3_6.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hankel3x3of4x4
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hankel3x3of4x4.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hankel3x3of4x5
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hankel3x3of4x5.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/linhyper5_2
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/linhyper5_2.cone
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pablo
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sturmfels3.9
>X%%PORTEXAMPLES%%%%EXAMPLESDIR%%/symmetryTest
>3543c6a129a179de8b490c2c76063db6
>echo x - gfan/Makefile
>sed 's/^X//' >gfan/Makefile << '5d6dd8d4fbd389d8f965ed6c59ba0061'
>X# Created by Lorenzo Salvadore
>X# $FreeBSD$
>X
>XPORTNAME=		gfan
>XDISTVERSION=		0.6.2
>XCATEGORIES=		math
>XMASTER_SITES=		http://home.math.au.dk/jensen/software/gfan/
>XDISTNAME=		${PORTNAME}${DISTVERSION}
>X
>XMAINTAINER=	phascolarctos@protonmail.ch
>XCOMMENT=	Software for computing Groebner fans and tropical varieties
>X
>XLICENSE=	GPLv2+
>XLICENSE_FILE=	${WRKSRC}/COPYING
>X
>XLIB_DEPENDS=	libgmp.so:math/gmp \
>X		libcddgmp.so:math/cddlib
>X
>XOPTIONS_DEFINE=	DOCS \
>X		EXAMPLES \
>X		TEST
>X
>XUSES= gmake
>X
>XCFLAGS+=	-I ${LOCALBASE}/include -DGMPRATIONAL
>X
>Xpost-patch:
>X	${REINPLACE_CMD} 's,ADDITIONALLINKOPTIONS = ,ADDITIONALLINKOPTIONS = -L${LOCALBASE}/lib ,' ${WRKSRC}/Makefile
>X
>Xpost-build-TEST-on:
>X	cd ${WRKSRC} && ./gfan _test
>X
>Xdo-install:
>X	${INSTALL_PROGRAM} ${WRKSRC}/gfan ${STAGEDIR}${PREFIX}/bin
>X	cd ${STAGEDIR}${PREFIX}/bin && ./gfan installlinks
>X
>Xpost-install-DOCS-on:
>X	${MKDIR} ${STAGEDIR}${DOCSDIR}
>X	${INSTALL_MAN} ${WRKSRC}/doc/manual.dvi ${STAGEDIR}${DOCSDIR}
>X	${INSTALL_MAN} ${WRKSRC}/doc/*.eps ${STAGEDIR}${DOCSDIR}
>X
>Xpost-install-EXAMPLES-on:
>X	${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
>X	cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
>X
>X.include <bsd.port.mk>
>5d6dd8d4fbd389d8f965ed6c59ba0061
>exit
>

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Attachments on bug 231186: 196896 | 196897 | 196902 | 196965 | 197624