Attachment 210971 Details for Bug 243497 – build log

build log

build_log.txt (text/plain), 11.88 KB, created by rsmith on 2020-01-22 18:05:23 UTC

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Creator: rsmith

Created: 2020-01-22 18:05:23 UTC

Size: 11.88 KB

patch

obsolete

>===>  License BSD3CLAUSE accepted by the user
>===>   py37-numpy-1.16.5_3,1 depends on file: /usr/local/sbin/pkg - found
>===> Fetching all distfiles required by py37-numpy-1.16.5_3,1 for building
>===>  Extracting for py37-numpy-1.16.5_3,1
>=> SHA256 Checksum OK for numpy-1.16.5.zip.
>=> SHA256 Checksum OK for numpy-ref-1.16.1.pdf.
>=> SHA256 Checksum OK for numpy-user-1.16.1.pdf.
>===>  Patching for py37-numpy-1.16.5_3,1
>===>  Applying FreeBSD patches for py37-numpy-1.16.5_3,1
>===>   py37-numpy-1.16.5_3,1 depends on executable: gfortran9 - found
>===>   py37-numpy-1.16.5_3,1 depends on executable: cython-3.7 - found
>===>   py37-numpy-1.16.5_3,1 depends on package: py37-setuptools>0 - found
>===>   py37-numpy-1.16.5_3,1 depends on file: /usr/local/bin/python3.7 - found
>===>   py37-numpy-1.16.5_3,1 depends on file: /usr/local/bin/as - found
>===>   py37-numpy-1.16.5_3,1 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so)
>===>   py37-numpy-1.16.5_3,1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
>===>  Configuring for py37-numpy-1.16.5_3,1
>/usr/bin/sed -i.bak -e 's|%%LOCALBASE%%|/usr/local|g'  -e 's|%%BLASLIBS%%|openblas, gfortran|; s|%%BLASNAME%%|openblas|'  -e 's|%%LAPACKLIBS%%|openblas, gfortran|; s|%%LIBRARIES%%|libraries|'  /usr/ports/math/py-numpy/work-py37/numpy-1.16.5/site.cfg
>blas_opt_info:
>blas_mkl_info:
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpgdqkkvi1/tmp
>creating /tmp/tmpgdqkkvi1/tmp/tmpgdqkkvi1
>compile options: '-MMD -MF /tmp/tmpgdqkkvi1/file.c.d -c'
>cc: /tmp/tmpgdqkkvi1/file.c
>  libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>blis_info:
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmph72fl_h7/tmp
>creating /tmp/tmph72fl_h7/tmp/tmph72fl_h7
>compile options: '-MMD -MF /tmp/tmph72fl_h7/file.c.d -c'
>cc: /tmp/tmph72fl_h7/file.c
>  libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>atlas_3_10_blas_threads_info:
>Setting PTATLAS=ATLAS
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpro1ks9ct/tmp
>creating /tmp/tmpro1ks9ct/tmp/tmpro1ks9ct
>compile options: '-MMD -MF /tmp/tmpro1ks9ct/file.c.d -c'
>cc: /tmp/tmpro1ks9ct/file.c
>  libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>atlas_3_10_blas_info:
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpc52dkfr6/tmp
>creating /tmp/tmpc52dkfr6/tmp/tmpc52dkfr6
>compile options: '-MMD -MF /tmp/tmpc52dkfr6/file.c.d -c'
>cc: /tmp/tmpc52dkfr6/file.c
>  libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>atlas_blas_threads_info:
>Setting PTATLAS=ATLAS
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpnoncs8nt/tmp
>creating /tmp/tmpnoncs8nt/tmp/tmpnoncs8nt
>compile options: '-MMD -MF /tmp/tmpnoncs8nt/file.c.d -c'
>cc: /tmp/tmpnoncs8nt/file.c
>  libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>atlas_blas_info:
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpt1mecyxr/tmp
>creating /tmp/tmpt1mecyxr/tmp/tmpt1mecyxr
>compile options: '-MMD -MF /tmp/tmpt1mecyxr/file.c.d -c'
>cc: /tmp/tmpt1mecyxr/file.c
>  libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc9/gcc/x86_64-portbld-freebsd12.0/9.2.0/../../../']
>  NOT AVAILABLE
>
>accelerate_info:
>  NOT AVAILABLE
>
>blas_info:
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpmdlm9xnh/tmp
>creating /tmp/tmpmdlm9xnh/tmp/tmpmdlm9xnh
>compile options: '-MMD -MF /tmp/tmpmdlm9xnh/file.c.d -c'
>cc: /tmp/tmpmdlm9xnh/file.c
>customize UnixCCompiler
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmph7lho3x9/tmp
>creating /tmp/tmph7lho3x9/tmp/tmph7lho3x9
>compile options: '-MMD -MF /tmp/tmph7lho3x9/file.c.d -c'
>cc: /tmp/tmph7lho3x9/file.c
>C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
>
>creating /tmp/tmpqn2q9_3y/tmp
>creating /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y
>compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c'
>cc: /tmp/tmpqn2q9_3y/source.c
>cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lcblas -o /tmp/tmpqn2q9_3y/a.out
>ld: error: unable to find library -lcblas
>cc: error: linker command failed with exit code 1 (use -v to see invocation)
>cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lblas -o /tmp/tmpqn2q9_3y/a.out
>ld: error: undefined symbol: cblas_ddot
>>>> referenced by source.c
>>>>               /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o:(main)
>cc: error: linker command failed with exit code 1 (use -v to see invocation)
>Running from numpy source directory.
>setup.py:394: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
>  run_build = parse_setuppy_commands()
>/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py:641: UserWarning: 
>    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
>    Directories to search for the libraries can be specified in the
>    numpy/distutils/site.cfg file (section [atlas]) or by setting
>    the ATLAS environment variable.
>  self.calc_info()
>Traceback (most recent call last):
>  File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 204, in link
>    self.spawn(linker + ld_args)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/ccompiler.py", line 92, in <lambda>
>    m = lambda self, *args, **kw: func(self, *args, **kw)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/ccompiler.py", line 172, in CCompiler_spawn
>    (cmd, s, msg))
>distutils.errors.DistutilsExecError: Command "cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lcblas -o /tmp/tmpqn2q9_3y/a.out" failed with exit status 1
>
>During handling of the above exception, another exception occurred:
>
>Traceback (most recent call last):
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 1734, in has_cblas
>    extra_postargs=info.get('extra_link_args', []))
>  File "/usr/local/lib/python3.7/distutils/ccompiler.py", line 734, in link_executable
>    debug, extra_preargs, extra_postargs, None, target_lang)
>  File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 206, in link
>    raise LinkError(msg)
>distutils.errors.LinkError: Command "cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lcblas -o /tmp/tmpqn2q9_3y/a.out" failed with exit status 1
>
>During handling of the above exception, another exception occurred:
>
>Traceback (most recent call last):
>  File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 204, in link
>    self.spawn(linker + ld_args)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/ccompiler.py", line 92, in <lambda>
>    m = lambda self, *args, **kw: func(self, *args, **kw)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/ccompiler.py", line 172, in CCompiler_spawn
>    (cmd, s, msg))
>distutils.errors.DistutilsExecError: Command "cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lblas -o /tmp/tmpqn2q9_3y/a.out" failed with exit status 1
>
>During handling of the above exception, another exception occurred:
>
>Traceback (most recent call last):
>  File "<string>", line 1, in <module>
>  File "setup.py", line 419, in <module>
>    setup_package()
>  File "setup.py", line 411, in setup_package
>    setup(**metadata)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/core.py", line 137, in setup
>    config = configuration()
>  File "setup.py", line 164, in configuration
>    config.add_subpackage('numpy')
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 1036, in add_subpackage
>    caller_level = 2)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 1005, in get_subpackage
>    caller_level = caller_level + 1)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
>    config = setup_module.configuration(*args)
>  File "numpy/setup.py", line 10, in configuration
>    config.add_subpackage('core')
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 1036, in add_subpackage
>    caller_level = 2)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 1005, in get_subpackage
>    caller_level = caller_level + 1)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
>    config = setup_module.configuration(*args)
>  File "numpy/core/setup.py", line 760, in configuration
>    blas_info = get_info('blas_opt', 0)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 448, in get_info
>    return cl().get_info(notfound_action)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 641, in get_info
>    self.calc_info()
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 1661, in calc_info
>    blas_info = get_info('blas')
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 448, in get_info
>    return cl().get_info(notfound_action)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 641, in get_info
>    self.calc_info()
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 1697, in calc_info
>    lib = self.has_cblas(info)
>  File "/usr/ports/math/py-numpy/work-py37/numpy-1.16.5/numpy/distutils/system_info.py", line 1740, in has_cblas
>    extra_postargs=info.get('extra_link_args', []))
>  File "/usr/local/lib/python3.7/distutils/ccompiler.py", line 734, in link_executable
>    debug, extra_preargs, extra_postargs, None, target_lang)
>  File "/usr/local/lib/python3.7/distutils/unixccompiler.py", line 206, in link
>    raise LinkError(msg)
>distutils.errors.LinkError: Command "cc /tmp/tmpqn2q9_3y/tmp/tmpqn2q9_3y/source.o -L/usr/local/lib -lblas -o /tmp/tmpqn2q9_3y/a.out" failed with exit status 1
>*** Error code 1
>
>Stop.
>make[1]: stopped in /usr/ports/math/py-numpy
>*** Error code 1
>
>Stop.
>make: stopped in /usr/ports/math/py-numpy

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Attachments on bug 243497: 210941 | 210969 | 210971 | 210997 | 211000