Attachment 21245 Details for Bug 37268 – file.shar

file.shar

file.shar (text/plain), 8.20 KB, created by Jeremy Karlson on 2002-04-20 05:10:01 UTC

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Creator: Jeremy Karlson

Created: 2002-04-20 05:10:01 UTC

Size: 8.20 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	/usr/ports/biology/avida
>#	/usr/ports/biology/avida/files
>#	/usr/ports/biology/avida/files/patch-aa
>#	/usr/ports/biology/avida/files/patch-ab
>#	/usr/ports/biology/avida/files/patch-ac
>#	/usr/ports/biology/avida/files/patch-ad
>#	/usr/ports/biology/avida/files/patch-ae
>#	/usr/ports/biology/avida/pkg-plist
>#	/usr/ports/biology/avida/distinfo
>#	/usr/ports/biology/avida/pkg-descr
>#	/usr/ports/biology/avida/pkg-comment
>#	/usr/ports/biology/avida/Makefile
>#
>echo c - /usr/ports/biology/avida
>mkdir -p /usr/ports/biology/avida > /dev/null 2>&1
>echo c - /usr/ports/biology/avida/files
>mkdir -p /usr/ports/biology/avida/files > /dev/null 2>&1
>echo x - /usr/ports/biology/avida/files/patch-aa
>sed 's/^X//' >/usr/ports/biology/avida/files/patch-aa << 'END-of-/usr/ports/biology/avida/files/patch-aa'
>X--- source/event/event_base.hh.orig	Wed Apr 17 21:26:31 2002
>X+++ source/event/event_base.hh	Wed Apr 17 21:26:41 2002
>X@@ -18,6 +18,7 @@
>X 
>X #include "../defs.hh"
>X #include <values.h>
>X+#include <float.h>
>X //#include "event_defs.hh"
>X 
>X enum eTriggerVariable { UPDATE, GENERATION, IMMEDIATE, UNDEFINED };
>END-of-/usr/ports/biology/avida/files/patch-aa
>echo x - /usr/ports/biology/avida/files/patch-ab
>sed 's/^X//' >/usr/ports/biology/avida/files/patch-ab << 'END-of-/usr/ports/biology/avida/files/patch-ab'
>X--- source/main/fitness_matrix.hh.orig	Thu Apr 18 08:54:04 2002
>X+++ source/main/fitness_matrix.hh	Thu Apr 18 08:54:15 2002
>X@@ -7,6 +7,7 @@
>X #include <vector>
>X #include <map>
>X #include <list>
>X+#include <sys/types.h>
>X #include <sys/timeb.h>
>X 
>X #include "../cpu/cpu.hh"
>END-of-/usr/ports/biology/avida/files/patch-ab
>echo x - /usr/ports/biology/avida/files/patch-ac
>sed 's/^X//' >/usr/ports/biology/avida/files/patch-ac << 'END-of-/usr/ports/biology/avida/files/patch-ac'
>X--- source/defs.hh.orig	Thu Apr 18 18:42:56 2002
>X+++ source/defs.hh	Thu Apr 18 18:43:14 2002
>X@@ -8,7 +8,7 @@
>X #ifndef DEFS_HH
>X #define DEFS_HH
>X 
>X-#define DEFAULT_DIR "../work/"
>X+#define DEFAULT_DIR "%%PREFIX%%/share/%%PORTNAME%%/"
>X 
>X // -= Remove bugfixes that change execution
>X //#define REMOVE_SIZE_RANGE_FIX      // had only affected upper limit in heads
>END-of-/usr/ports/biology/avida/files/patch-ac
>echo x - /usr/ports/biology/avida/files/patch-ad
>sed 's/^X//' >/usr/ports/biology/avida/files/patch-ad << 'END-of-/usr/ports/biology/avida/files/patch-ad'
>X--- source/support/genesis.orig	Fri Apr 19 20:00:53 2002
>X+++ source/support/genesis	Fri Apr 19 20:02:24 2002
>X@@ -13,7 +13,7 @@
>X RANDOM_SEED 0		# Random number seed. (0 for based on time)
>X 
>X ### Configuration Files ###
>X-DEFAULT_DIR ../work/         # Directory in which config files can be found.
>X+DEFAULT_DIR %%PREFIX%%/share/%%PORTNAME%%/ # Directory in which config files can be found.
>X INST_SET inst_set.28.base    # File containing instruction set.
>X TASK_SET task_set            # File containing task set.
>X RESOURCE_SET resource_set    # File containing resource set.
>END-of-/usr/ports/biology/avida/files/patch-ad
>echo x - /usr/ports/biology/avida/files/patch-ae
>sed 's/^X//' >/usr/ports/biology/avida/files/patch-ae << 'END-of-/usr/ports/biology/avida/files/patch-ae'
>X--- source/support/genesis.heads.orig	Fri Apr 19 20:01:09 2002
>X+++ source/support/genesis.heads	Fri Apr 19 20:02:47 2002
>X@@ -13,7 +13,7 @@
>X RANDOM_SEED 0		# Random number seed. (0 for based on time)
>X 
>X ### Configuration Files ###
>X-DEFAULT_DIR ../work/         # Directory in which config files can be found.
>X+DEFAULT_DIR %%PREFIX%%/share/%%PORTNAME%%/ # Directory in which config files can be found.
>X INST_SET inst_set.26.heads.new    # File containing instruction set.
>X TASK_SET task_set            # File containing task set.
>X RESOURCE_SET resource_set            # File containing resource set.
>END-of-/usr/ports/biology/avida/files/patch-ae
>echo x - /usr/ports/biology/avida/pkg-plist
>sed 's/^X//' >/usr/ports/biology/avida/pkg-plist << 'END-of-/usr/ports/biology/avida/pkg-plist'
>Xbin/avida
>Xshare/avida/creature.base
>Xshare/avida/creature.heads
>Xshare/avida/creature.heads.new
>Xshare/avida/genesis
>Xshare/avida/genesis.heads
>Xshare/avida/inst_set.19.short
>Xshare/avida/inst_set.24.base
>Xshare/avida/inst_set.26.heads.new
>Xshare/avida/inst_set.27.multi
>Xshare/avida/inst_set.27.no-nop
>Xshare/avida/inst_set.27.parasite
>Xshare/avida/inst_set.28.base
>Xshare/avida/inst_set.28.const
>Xshare/avida/inst_set.28.dir-match
>Xshare/avida/inst_set.29.base_memsize
>Xshare/avida/inst_set.31.multi
>Xshare/avida/inst_set.32.heads
>Xshare/avida/inst_set.84.long
>Xshare/avida/inst_set.args
>Xshare/avida/inst_set.big
>Xshare/avida/inst_set.dev
>Xshare/avida/inst_set.full
>Xshare/avida/inst_set.long
>Xshare/avida/inst_set.re
>Xshare/avida/inst_set.red
>Xshare/avida/inst_set.short
>Xshare/avida/inst_set.test
>Xshare/avida/inst_set.tiny
>Xshare/avida/inst_set.travc
>Xshare/avida/event_list
>Xshare/avida/resource_set
>Xshare/avida/task_set
>Xshare/avida/analyze.cfg
>X@dirrm share/avida
>END-of-/usr/ports/biology/avida/pkg-plist
>echo x - /usr/ports/biology/avida/distinfo
>sed 's/^X//' >/usr/ports/biology/avida/distinfo << 'END-of-/usr/ports/biology/avida/distinfo'
>XMD5 (avida-1.6.0.tar.gz) = 2294af061f200c486de2ed889e0e17af
>END-of-/usr/ports/biology/avida/distinfo
>echo x - /usr/ports/biology/avida/pkg-descr
>sed 's/^X//' >/usr/ports/biology/avida/pkg-descr << 'END-of-/usr/ports/biology/avida/pkg-descr'
>XThe computer program avida is an auto-adaptive genetic system designed
>Xprimarily for use as a platform in Digital or Artificial Life research. The
>Xavida system is based on concepts similar to those employed by the tierra
>Xprogram developed by Tom Ray. It is a population of self-reproducing strings
>Xwith a Turing-complete genetic basis subjected to Poisson-random mutations.
>XThe population adapts to the combination of an intrinsic fitness landscape
>X(self-reproduction) and an externally imposed (extrinsic) fitness function
>Xprovided by the researcher. By studying this system, one can examine
>Xevolutionary adaptation, general traits of living systems (such as
>Xself-organization), and other issues pertaining to theoretical or
>Xevolutionary biology and dynamic systems.
>X
>XWWW: http://dllab.caltech.edu/avida/
>X
>XJeremy
>Xkarlj000@unbc.ca
>END-of-/usr/ports/biology/avida/pkg-descr
>echo x - /usr/ports/biology/avida/pkg-comment
>sed 's/^X//' >/usr/ports/biology/avida/pkg-comment << 'END-of-/usr/ports/biology/avida/pkg-comment'
>XAvida is an auto-adaptive genetic system designed for ALife research
>END-of-/usr/ports/biology/avida/pkg-comment
>echo x - /usr/ports/biology/avida/Makefile
>sed 's/^X//' >/usr/ports/biology/avida/Makefile << 'END-of-/usr/ports/biology/avida/Makefile'
>X# New ports collection makefile for:	avida
>X# Date created:		17 April 2002
>X# Whom:			Jeremy <karlj000@unbc.ca>
>X#
>X# $FreeBSD:$
>X#
>X
>XPORTNAME=	avida
>XPORTVERSION=	1.6.0
>XCATEGORIES=	science biology
>XMASTER_SITES=	http://dllab.caltech.edu/avida/versions/
>X
>XMAINTAINER=	karlj000@unbc.ca
>X
>XWRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION:C/\.[[:alnum:]]+$//}
>XUSE_GMAKE=	yes
>XGNU_CONFIGURE=	yes
>XCONFIGURE_ARGS=	--enable-viewer --enable-standard-prefix --prefix=${PREFIX} --datadir=${PREFIX}/share/${PORTNAME}
>X
>Xpost-patch:
>X	# Change source/defs.hh prefix and port name.
>X	@ ${MV} ${WRKSRC}/source/defs.hh ${WRKSRC}/source/defs.hh.presed
>X	@ ${SED} -e 's#%%PREFIX%%#${PREFIX}#g' ${WRKSRC}/source/defs.hh.presed \
>X	| ${SED} -e 's#%%PORTNAME%%#${PORTNAME}#g' \
>X	> ${WRKSRC}/source/defs.hh
>X
>X	# Change source/support/genesis prefix and port name.
>X	@ ${MV} ${WRKSRC}/source/support/genesis ${WRKSRC}/source/support/genesis.presed
>X	@ ${SED} -e 's#%%PREFIX%%#${PREFIX}#g' ${WRKSRC}/source/support/genesis.presed \
>X	| ${SED} -e 's#%%PORTNAME%%#${PORTNAME}#g' \
>X	> ${WRKSRC}/source/support/genesis
>X
>X	# Change source/support/genesis.heads prefix and port name.
>X	@ ${MV} ${WRKSRC}/source/support/genesis.heads ${WRKSRC}/source/support/genesis.heads.presed
>X	@ ${SED} -e 's#%%PREFIX%%#${PREFIX}#g' ${WRKSRC}/source/support/genesis.heads.presed \
>X	| ${SED} -e 's#%%PORTNAME%%#${PORTNAME}#g' \
>X	> ${WRKSRC}/source/support/genesis.heads
>X
>X.include <bsd.port.mk>
>END-of-/usr/ports/biology/avida/Makefile
>exit

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Attachments on bug 37268: 21245