FreeBSD Bugzilla – Attachment 227029 Details for
Bug 251626
math/py-numpy: Update to 1.20.3 (compatible with Python 3.9)
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[patch]
Update to 1.20.3 and add missing TEST_DEPENDS
numpy-1.20.3-p1.diff (text/plain), 116.73 KB, created by
Wen Heping
on 2021-08-09 03:03:20 UTC
(
hide
)
Description:
Update to 1.20.3 and add missing TEST_DEPENDS
Filename:
MIME Type:
Creator:
Wen Heping
Created:
2021-08-09 03:03:20 UTC
Size:
116.73 KB
patch
obsolete
>diff --git a/Mk/Uses/python.mk b/Mk/Uses/python.mk >index c7431b2c86e3..e6c0cfeb3d66 100644 >--- a/Mk/Uses/python.mk >+++ b/Mk/Uses/python.mk >@@ -646,7 +646,7 @@ CMAKE_ARGS+= -DPython_ADDITIONAL_VERSIONS=${PYTHON_VER} > > # Python 3rd-party modules > PYGAME= ${PYTHON_PKGNAMEPREFIX}game>0:devel/py-game@${PY_FLAVOR} >-PYNUMPY= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16,1<1.20,1:math/py-numpy@${PY_FLAVOR} >+PYNUMPY= ${PYTHON_PKGNAMEPREFIX}numpy>=1.16,1<1.21,1:math/py-numpy@${PY_FLAVOR} > > # Common Python modules that can be needed but only for some versions of Python. > .if ${PYTHON_REL} < 30500 >diff --git a/math/py-numpy/Makefile b/math/py-numpy/Makefile >index 7994d4368641..2f4a4882a782 100644 >--- a/math/py-numpy/Makefile >+++ b/math/py-numpy/Makefile >@@ -1,16 +1,16 @@ > # Created by: Tony Maher > > PORTNAME= numpy >-PORTVERSION= 1.16.6 >-PORTREVISION= 2 >+PORTVERSION= 1.20.3 > PORTEPOCH= 1 > CATEGORIES= math python > MASTER_SITES= CHEESESHOP \ >- https://docs.scipy.org/doc/${PORTNAME}-${PORTVERSION}/:doc >+ https://numpy.org/doc/${PORTVERSION:R}/:doc > PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} > DISTFILES= ${DISTNAME}${EXTRACT_SUFX} \ >- ${PORTNAME}-ref-${PORTVERSION:R}.1.pdf:doc \ >- ${PORTNAME}-user-${PORTVERSION:R}.1.pdf:doc >+ ${PORTNAME}-ref.pdf:doc \ >+ ${PORTNAME}-user.pdf:doc >+DIST_SUBDIR= ${PORTNAME}-${PORTVERSION:R} > EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} > > MAINTAINER= python@FreeBSD.org >@@ -19,13 +19,14 @@ COMMENT= The New Numeric Extension to Python > LICENSE= BSD3CLAUSE > LICENSE_FILE= ${WRKSRC}/LICENSE.txt > >-TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} >+TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>=0:devel/py-pytest@${PY_FLAVOR} \ >+ ${PYTHON_PKGNAMEPREFIX}hypothesis>=5.41.3:devel/py-hypothesis@${PY_FLAVOR} > >-USES= compiler:c11 fortran python:3.6+ zip >-USE_PYTHON= allflavors autoplist concurrent cython distutils >+USES= compiler:c11 fortran python:3.7+ zip >+USE_PYTHON= allflavors concurrent cython distutils > > GCCLIBDIR_CMDS= ${FC} -print-file-name=libgfortran.so | ${SED} -e s/libgfortran.so// >-LDFLAGS+= -shared >+LDFLAGS+= -s > PYDISTUTILS_BUILDARGS= --fcompiler=gnu95 > PYDISTUTILS_CONFIGUREARGS= --fcompiler=gnu95 > >@@ -49,14 +50,12 @@ SUITESPARSE_LIB_DEPENDS=libumfpack.so:math/suitesparse-umfpack > post-extract: > @${TOUCH} ${WRKSRC}/numpy/f2py/tests/src/temp > >-post-patch: >- @${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py >- @${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg >- >-post-patch-SUITESPARSE-off: >+pre-configure-SUITESPARSE-off: > @${REINPLACE_CMD} -e 's|:%%LOCALBASE%%/include/suitesparse||' ${WRKSRC}/site.cfg > > pre-configure: >+ @${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py >+ @${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg > ${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \ > -e 's|%%BLASLIBS%%|${BLASLIBS}|; s|%%BLASNAME%%|${BLASNAME}|' \ > -e 's|%%LAPACKLIBS%%|${LAPACKLIBS}|; s|%%LIBRARIES%%|${LIBRARIES}|' \ >@@ -68,8 +67,8 @@ post-install: > > post-install-DOCS-on: > @${MKDIR} ${STAGEDIR}${DOCSDIR} >- ${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-ref-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR} >- ${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-user-${PORTVERSION:R}.1.pdf ${STAGEDIR}${DOCSDIR} >+ ${INSTALL_DATA} ${_DISTDIR}/${PORTNAME}-ref.pdf ${STAGEDIR}${DOCSDIR} >+ ${INSTALL_DATA} ${_DISTDIR}/${PORTNAME}-user.pdf ${STAGEDIR}${DOCSDIR} > > do-test: > @cd ${WRKSRC} && ${PYTHON_CMD} runtests.py >diff --git a/math/py-numpy/distinfo b/math/py-numpy/distinfo >index 44663a5c50f5..7a8bcb26092b 100644 >--- a/math/py-numpy/distinfo >+++ b/math/py-numpy/distinfo >@@ -1,7 +1,7 @@ >-TIMESTAMP = 1588013658 >-SHA256 (numpy-1.16.6.zip) = e5cf3fdf13401885e8eea8170624ec96225e2174eb0c611c6f26dd33b489e3ff >-SIZE (numpy-1.16.6.zip) = 5143340 >-SHA256 (numpy-ref-1.16.1.pdf) = 5296c4949c92d00ae2c94ce65b78369b8081995dc72447bb20b6518bfaed3552 >-SIZE (numpy-ref-1.16.1.pdf) = 5175448 >-SHA256 (numpy-user-1.16.1.pdf) = aa8c591eee4c537768854f19e3cf4b861280828c19eb9d2e6194ea230570ea75 >-SIZE (numpy-user-1.16.1.pdf) = 592508 >+TIMESTAMP = 1621965044 >+SHA256 (numpy-1.20/numpy-1.20.3.zip) = e55185e51b18d788e49fe8305fd73ef4470596b33fc2c1ceb304566b99c71a69 >+SIZE (numpy-1.20/numpy-1.20.3.zip) = 7761912 >+SHA256 (numpy-1.20/numpy-ref.pdf) = 39514faf26f4fecb697d771ba83e9340e35d3afd22478ab7e641f9daed67e84a >+SIZE (numpy-1.20/numpy-ref.pdf) = 7362241 >+SHA256 (numpy-1.20/numpy-user.pdf) = 20cc665d19cbb4a2dfe7505a06dc23ae978982fec27e3108ddb332110bc2a94c >+SIZE (numpy-1.20/numpy-user.pdf) = 4977046 >diff --git a/math/py-numpy/files/patch-numpy-distutils-exec_command.py b/math/py-numpy/files/patch-numpy-distutils-exec_command.py >index ea297206195c..a99e5814811d 100644 >--- a/math/py-numpy/files/patch-numpy-distutils-exec_command.py >+++ b/math/py-numpy/files/patch-numpy-distutils-exec_command.py >@@ -1,6 +1,6 @@ >---- numpy/distutils/exec_command.py.orig 2017-09-29 20:10:10 UTC >+--- numpy/distutils/exec_command.py.orig 2021-05-08 18:35:28 UTC > +++ numpy/distutils/exec_command.py >-@@ -231,7 +231,7 @@ def _exec_command(command, use_shell=Non >+@@ -261,7 +261,7 @@ def _exec_command(command, use_shell=None, use_tee = N > > if os.name == 'posix' and use_shell: > # On POSIX, subprocess always uses /bin/sh, override >diff --git a/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py >index 4c52b846e1b4..63c4d24b2f9b 100644 >--- a/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py >+++ b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py >@@ -1,6 +1,6 @@ >---- numpy/distutils/fcompiler/__init__.py.orig 2019-01-31 02:31:08 UTC >+--- numpy/distutils/fcompiler/__init__.py.orig 2021-05-09 10:38:00 UTC > +++ numpy/distutils/fcompiler/__init__.py >-@@ -177,7 +177,7 @@ class FCompiler(CCompiler): >+@@ -171,7 +171,7 @@ class FCompiler(CCompiler): > # gnu95 compiler type when there are F90 sources. > suggested_f90_compiler = None > >diff --git a/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py b/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py >index c34798b4f9a1..5efb5d0a3d37 100644 >--- a/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py >+++ b/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py >@@ -1,6 +1,6 @@ >---- numpy/distutils/fcompiler/gnu.py.orig 2015-09-13 16:21:27 UTC >+--- numpy/distutils/fcompiler/gnu.py.orig 2021-05-08 21:14:06 UTC > +++ numpy/distutils/fcompiler/gnu.py >-@@ -83,7 +83,7 @@ class GnuFCompiler(FCompiler): >+@@ -79,7 +79,7 @@ class GnuFCompiler(FCompiler): > return None > return v[1] > >@@ -9,7 +9,7 @@ > executables = { > 'version_cmd' : [None, "-dumpversion"], > 'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"], >-@@ -107,11 +107,13 @@ class GnuFCompiler(FCompiler): >+@@ -103,11 +103,13 @@ class GnuFCompiler(FCompiler): > for key in ['version_cmd', 'compiler_f77', 'linker_so', 'linker_exe']: > executables[key].append('-mno-cygwin') > >@@ -24,7 +24,7 @@ > if sys.platform == 'darwin': > target = os.environ.get('MACOSX_DEPLOYMENT_TARGET', None) > # If MACOSX_DEPLOYMENT_TARGET is set, we simply trust the value >-@@ -265,7 +267,7 @@ class Gnu95FCompiler(GnuFCompiler): >+@@ -287,7 +289,7 @@ class Gnu95FCompiler(GnuFCompiler): > self.executables[key].append('-mno-cygwin') > return v > >diff --git a/math/py-numpy/files/patch-numpy-distutils-system_info.py b/math/py-numpy/files/patch-numpy-distutils-system_info.py >index 299f98311648..4ba9667e65c6 100644 >--- a/math/py-numpy/files/patch-numpy-distutils-system_info.py >+++ b/math/py-numpy/files/patch-numpy-distutils-system_info.py >@@ -1,6 +1,6 @@ >---- numpy/distutils/system_info.py.orig 2019-08-27 21:01:36 UTC >+--- numpy/distutils/system_info.py.orig 2021-05-09 10:38:00 UTC > +++ numpy/distutils/system_info.py >-@@ -172,6 +172,8 @@ def _c_string_literal(s): >+@@ -209,6 +209,8 @@ def _c_string_literal(s): > Convert a python string into a literal suitable for inclusion into C code > """ > # only these three characters are forbidden in C strings >@@ -9,7 +9,7 @@ > s = s.replace('\\', r'\\') > s = s.replace('"', r'\"') > s = s.replace('\n', r'\n') >-@@ -1112,8 +1114,8 @@ class atlas_info(system_info): >+@@ -1322,8 +1324,8 @@ class atlas_info(system_info): > dir_env_var = 'ATLAS' > _lib_names = ['f77blas', 'cblas'] > if sys.platform[:7] == 'freebsd': >@@ -20,45 +20,3 @@ > else: > _lib_atlas = ['atlas'] > _lib_lapack = ['lapack'] >-@@ -1633,11 +1635,6 @@ class blas_opt_info(system_info): >- self.set_info(**blis_info) >- return >- >-- openblas_info = get_info('openblas') >-- if openblas_info: >-- self.set_info(**openblas_info) >-- return >-- >- atlas_info = get_info('atlas_3_10_blas_threads') >- if not atlas_info: >- atlas_info = get_info('atlas_3_10_blas') >-@@ -1730,18 +1727,17 @@ class blas_info(system_info): >- # check we can link (find library) >- # some systems have separate cblas and blas libs. First >- # check for cblas lib, and if not present check for blas lib. >-- try: >-- c.link_executable(obj, os.path.join(tmpdir, "a.out"), >-- libraries=["cblas"], >-- library_dirs=info['library_dirs'], >-- extra_postargs=info.get('extra_link_args', [])) >-- res = "cblas" >-- except distutils.ccompiler.LinkError: >-- c.link_executable(obj, os.path.join(tmpdir, "a.out"), >-- libraries=["blas"], >-- library_dirs=info['library_dirs'], >-- extra_postargs=info.get('extra_link_args', [])) >-- res = "blas" >-+ res = None >-+ for libname in ['cblas', 'blas', 'openblas']: >-+ try: >-+ c.link_executable(obj, os.path.join(tmpdir, "a.out"), >-+ libraries=[libname], >-+ library_dirs=info['library_dirs'], >-+ extra_postargs=info.get('extra_link_args', [])) >-+ res = libname >-+ break >-+ except distutils.ccompiler.LinkError: >-+ pass >- except distutils.ccompiler.CompileError: >- res = None >- finally: >diff --git a/math/py-numpy/pkg-plist b/math/py-numpy/pkg-plist >new file mode 100644 >index 000000000000..38996ce65b20 >--- /dev/null >+++ b/math/py-numpy/pkg-plist >@@ -0,0 +1,1376 @@ >+bin/f2py >+bin/f2py3 >+bin/f2py%%PYTHON_VER%% >+%%PYTHON_SITELIBDIR%%/numpy/LICENSE.txt >+%%PYTHON_SITELIBDIR%%/numpy/__config__.py >+%%PYTHON_SITELIBDIR%%/numpy/__init__.cython-30.pxd >+%%PYTHON_SITELIBDIR%%/numpy/__init__.pxd >+%%PYTHON_SITELIBDIR%%/numpy/__init__.py >+%%PYTHON_SITELIBDIR%%/numpy/__init__.pyi >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__config__.cpython-%%PYTHON_SUFFIX%%.pyc >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_distributor_init.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc >+%%PYTHON_SITELIBDIR%%/numpy/__pycache__/_distributor_init.cpython-%%PYTHON_SUFFIX%%.pyc 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