FreeBSD Bugzilla – Attachment 250434 Details for
Bug 278739
biology/kallisto: Convert post-extract to EXTRACT_AFTER_ARGS
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[patch]
Patch for kallisto v2
rmrf-kallisto-v2.patch (text/plain), 763 bytes, created by
Daniel Engberg
on 2024-05-05 12:17:41 UTC
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Description:
Patch for kallisto v2
Filename:
MIME Type:
Creator:
Daniel Engberg
Created:
2024-05-05 12:17:41 UTC
Size:
763 bytes
patch
obsolete
>diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile >index 8774208d9097..82e7813927fa 100644 >--- a/biology/kallisto/Makefile >+++ b/biology/kallisto/Makefile >@@ -22,6 +22,9 @@ USES= cmake:noninja compiler:c++11-lang gmake localbase:ldflags > USE_GITHUB= yes > GH_ACCOUNT= pachterlab > >+EXTRACT_AFTER_ARGS= --exclude ${GH_PROJECT_DEFAULT}-${GH_TAGNAME_EXTRACT}/ext/htslib \ >+ --no-same-owner --no-same-permissions >+ > SUB_FILES= kallisto-test > > PORTEXAMPLES= * >@@ -39,9 +42,6 @@ LDFLAGS+= -lhts -lz > > OPTIONS_DEFINE= EXAMPLES > >-post-extract: >- ${RM} -rf ${WRKSRC}/ext/htslib >- > post-install-EXAMPLES-on: > ${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin > cd ${WRKSRC}/test && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
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