Attachment 250834 Details for Bug 279183 – Upgrade to 1.10.11 and enable MPI by default

[patch] Upgrade to 1.10.11 and enable MPI by default

science_hdf5-110.diff (text/plain), 9.72 KB, created by Thierry Thomas on 2024-05-20 16:34:13 UTC

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Creator: Thierry Thomas

Created: 2024-05-20 16:34:13 UTC

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patch

obsolete

>From d1e76e8f71e6ed2fb08d5611bda2e63ec5d37ce4 Mon Sep 17 00:00:00 2001
>From: Thierry Thomas <thierry@FreeBSD.org>
>Date: Mon, 20 May 2024 18:22:34 +0200
>Subject: [PATCH] science/hdf5-110: Upgrade to 1.10.11 and enable MPI by
> default
>MIME-Version: 1.0
>Content-Type: text/plain; charset=UTF-8
>Content-Transfer-Encoding: 8bit
>
>Enable MPI by default, in order to be used by new releases of MED and
>Code_Aster.
>
>Since Iâm there use the MPI helper.
>---
> science/hdf5-110/Makefile  | 22 +++++++++----
> science/hdf5-110/distinfo  |  6 ++--
> science/hdf5-110/pkg-plist | 67 +++++++++++++++++++-------------------
> 3 files changed, 52 insertions(+), 43 deletions(-)
>
>diff --git a/science/hdf5-110/Makefile b/science/hdf5-110/Makefile
>index 3fa2fec7d3f8..33ce59ea7262 100644
>--- a/science/hdf5-110/Makefile
>+++ b/science/hdf5-110/Makefile
>@@ -1,5 +1,5 @@
> PORTNAME=	hdf5
>-PORTVERSION=	1.10.10
>+PORTVERSION=	1.10.11
> CATEGORIES=	science archivers graphics
> MASTER_SITES=	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
> 		LOCAL/sunpoet
>@@ -38,8 +38,7 @@ PORTSCOUT=	limit:^1\.10\.
> OPTIONS_DEFINE=	DEBUG EXAMPLES FORTRAN SZIP
> OPTIONS_RADIO=	SUPPORT
> OPTIONS_RADIO_SUPPORT=	CXX PARALLEL
>-OPTIONS_DEFAULT=CXX SZIP
>-OPTIONS_DEFAULT+=FORTRAN
>+OPTIONS_DEFAULT=FORTRAN PARALLEL SZIP
> OPTIONS_SUB=	yes
> PARALLEL_DESC=	Parallel support
> 
>@@ -49,12 +48,17 @@ DEBUG_CONFIGURE_ON=	--enable-build-mode=debug
> FORTRAN_CONFIGURE_ENABLE=	fortran
> FORTRAN_CONFIGURE_ENV=	F9X=${FC}
> FORTRAN_USES=		fortran
>+PARALLEL_IMPLIES=	FORTRAN
> PARALLEL_CONFIGURE_ENABLE=	parallel
>-PARALLEL_LDFLAGS=	-L${LOCALBASE}/lib -lmpi
>-PARALLEL_LIB_DEPENDS=	libmpi.so:net/mpich
>+PARALLEL_USES=		mpi pkgconfig
>+PARALLEL_CFLAGS=	${MPI_CFLAGS}
>+PARALLEL_VARS=		FCFLAGS+=-I${LOCALBASE}/include
>+PARALLEL_LDFLAGS=	${MPI_LIBS}
> SZIP_CONFIGURE_ON=	--with-szlib=${LOCALBASE}
> SZIP_LIB_DEPENDS=	libsz.so:science/libaec
> 
>+.include <bsd.port.options.mk>
>+
> post-patch:
> 	@${REINPLACE_CMD} -e 's|hdf5_examples|examples/hdf5${PKGNAMESUFFIX}|' ${WRKSRC}/configure
> 	@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags
>@@ -71,10 +75,14 @@ post-patch:
> post-install:
> 	${MV} ${STAGEDIR}${PREFIX}/lib/libhdf5.settings	${STAGEDIR}${PREFIX}/lib/libhdf5${PKGNAMESUFFIX}.settings
> 
>+post-install-PARALLEL-on:
>+	${MV} ${STAGEDIR}${PREFIX}/bin/h5pcc ${STAGEDIR}${PREFIX}/bin/h5pcc${PKGNAMESUFFIX}
>+	${MV} ${STAGEDIR}${PREFIX}/bin/h5pfc ${STAGEDIR}${PREFIX}/bin/h5pfc${PKGNAMESUFFIX}
>+
> post-install-CXX-on:
> 	${MV} ${STAGEDIR}${PREFIX}/bin/h5cc ${STAGEDIR}${PREFIX}/bin/h5cc${PKGNAMESUFFIX}
>-
>-post-install-FORTRAN-on:
>+.if ${PORT_OPTIONS:MFORTRAN}
> 	${MV} ${STAGEDIR}${PREFIX}/bin/h5fc ${STAGEDIR}${PREFIX}/bin/h5fc${PKGNAMESUFFIX}
>+.endif
> 
> .include <bsd.port.mk>
>diff --git a/science/hdf5-110/distinfo b/science/hdf5-110/distinfo
>index da038237e01f..f70a885b1f14 100644
>--- a/science/hdf5-110/distinfo
>+++ b/science/hdf5-110/distinfo
>@@ -1,3 +1,3 @@
>-TIMESTAMP = 1683227587
>-SHA256 (hdf5-1.10.10.tar.bz2) = 56bbf9577aea4f07d7ac400b59f169ab23e5887c306a63dd5cf18b49f521d28c
>-SIZE (hdf5-1.10.10.tar.bz2) = 15231191
>+TIMESTAMP = 1716151876
>+SHA256 (hdf5-1.10.11.tar.bz2) = 0afc77da5c46217709475bbefbca91c0cb6f1ea628ccd8c36196cf6c5a4de304
>+SIZE (hdf5-1.10.11.tar.bz2) = 15286914
>diff --git a/science/hdf5-110/pkg-plist b/science/hdf5-110/pkg-plist
>index faa7a318f5c1..446cf01e3750 100644
>--- a/science/hdf5-110/pkg-plist
>+++ b/science/hdf5-110/pkg-plist
>@@ -5,14 +5,15 @@ bin/h5copy-110
> bin/h5debug-110
> bin/h5diff-110
> bin/h5dump-110
>-%%FORTRAN%%%%NO_PARALLEL%%bin/h5fc-110
>+%%FORTRAN%%%%CXX%%bin/h5fc-110
> bin/h5format_convert-110
> bin/h5import-110
> bin/h5jam-110
> bin/h5ls-110
> bin/h5mkgrp-110
> %%PARALLEL%%bin/h5pcc-110
>-%%PARALLEL%%bin/h5perf-110
>+%%NO_CXX%%bin/h5perf-110
>+%%PARALLEL%%bin/h5pfc-110
> %%NO_PARALLEL%%bin/h5perf_serial-110
> bin/h5redeploy-110
> bin/h5repack-110
>@@ -136,47 +137,30 @@ lib/libhdf5-110.a
> lib/libhdf5-110.settings
> lib/libhdf5-110.so
> lib/libhdf5-110.so.103
>-lib/libhdf5-110.so.103.4.0
>+lib/libhdf5-110.so.103.4.1
> %%CXX%%lib/libhdf5-110_cpp.a
> %%CXX%%lib/libhdf5-110_cpp.so
> %%CXX%%lib/libhdf5-110_cpp.so.103
>-%%CXX%%lib/libhdf5-110_cpp.so.103.4.2
>+%%CXX%%lib/libhdf5-110_cpp.so.103.4.3
> %%FORTRAN%%lib/libhdf5-110_fortran.a
> %%FORTRAN%%lib/libhdf5-110_fortran.so
> %%FORTRAN%%lib/libhdf5-110_fortran.so.102
>-%%FORTRAN%%lib/libhdf5-110_fortran.so.102.1.3
>+%%FORTRAN%%lib/libhdf5-110_fortran.so.102.1.4
> lib/libhdf5-110_hl.a
> lib/libhdf5-110_hl.so
> lib/libhdf5-110_hl.so.100
>-lib/libhdf5-110_hl.so.100.1.7
>+lib/libhdf5-110_hl.so.100.1.8
> %%CXX%%lib/libhdf5-110_hl_cpp.a
> %%CXX%%lib/libhdf5-110_hl_cpp.so
> %%CXX%%lib/libhdf5-110_hl_cpp.so.100
>-%%CXX%%lib/libhdf5-110_hl_cpp.so.100.1.8
>+%%CXX%%lib/libhdf5-110_hl_cpp.so.100.1.9
> %%FORTRAN%%lib/libhdf5-110_hl_fortran.a
> %%FORTRAN%%lib/libhdf5-110_hl_fortran.so
> %%FORTRAN%%lib/libhdf5-110hl_fortran.a
> %%FORTRAN%%lib/libhdf5-110hl_fortran.so
> %%FORTRAN%%lib/libhdf5-110hl_fortran.so.100
>-%%FORTRAN%%lib/libhdf5-110hl_fortran.so.100.0.9
>+%%FORTRAN%%lib/libhdf5-110hl_fortran.so.100.0.10
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/README
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_cmprss.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtatt.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtdat.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrp.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrpar.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrpd.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_extend.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_rdwt.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_subset.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/run-c++-ex.sh
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_attribute.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_chunk_read.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_cmprss.c
>@@ -189,8 +173,8 @@ lib/libhdf5-110_hl.so.100.1.7
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_debug_trace.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_drivers.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_elink_unix2win.c
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend_write.c
>+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extlink.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_group.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_mount.c
>@@ -210,13 +194,30 @@ lib/libhdf5-110_hl.so.100.1.7
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_vds-simpleIO.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_vds.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_write.c
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5_filtered_writes.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5_filtered_writes_no_sel.c
>+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5_filtered_writes.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5example.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/run-c-ex.sh
>-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_cmprss.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtatt.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtdat.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrp.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrpar.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_crtgrpd.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_extend.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_rdwt.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5tutr_subset.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/run-c++-ex.sh
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound_complex_fortran2003.f90
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound_fortran2003.f90
>+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/h5_cmprss.f90
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/h5_crtatt.f90
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/h5_crtdat.f90
>@@ -235,8 +236,9 @@ lib/libhdf5-110_hl.so.100.1.7
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/run-fortran-ex.sh
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/rwdset_fortran2003.f90
> %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/selectele.f90
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/ptExampleFL.cpp
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/run-hlc++-ex.sh
>+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90
>+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90
>+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_ds1.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_image1.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ex_image2.c
>@@ -260,8 +262,7 @@ lib/libhdf5-110_hl.so.100.1.7
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/pal_rgb.h
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleFL.c
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/run-hlc-ex.sh
>-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90
>-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90
>-%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/ptExampleFL.cpp
>+%%CXX%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c++/run-hlc++-ex.sh
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/run-hl-ex.sh
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/run-all-ex.sh
>-- 
>2.45.0
>

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Attachments on bug 279183: 250834 | 251169