Attachment 28615 Details for Bug 48047 – file.diff

[patch] file.diff

file.diff (text/plain), 4.77 KB, created by tkato on 2003-02-07 14:40:10 UTC

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Creator: tkato

Created: 2003-02-07 14:40:10 UTC

Size: 4.77 KB

patch

obsolete

>diff -urN /usr/ports/biology/libgenome/Makefile biology/libgenome/Makefile
>--- /usr/ports/biology/libgenome/Makefile	Fri Nov  8 21:23:15 2002
>+++ biology/libgenome/Makefile	Tue Feb  4 23:50:19 2003
>@@ -7,8 +7,7 @@
> #
> 
> PORTNAME=	libgenome
>-PORTVERSION=	0.5.0
>-PORTREVISION=	1
>+PORTVERSION=	0.5.1
> CATEGORIES=	biology
> MASTER_SITES=	http://www.libgenome.org/releases/
> DISTNAME=	libGenome-${PORTVERSION}
>@@ -17,11 +16,11 @@
> 
> USE_REINPLACE=	yes
> USE_LIBTOOL=	yes
>-CONFIGURE_TARGET=	--build=${ARCH}-portbld-freebsd${OSREL}
>+CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
> INSTALLS_SHLIB=	yes
> 
> post-patch:
>-	@${REINPLACE_CMD} -e 's|-O3|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in
>+	@${REINPLACE_CMD} -e 's|-O2|@CXXFLAGS@|g' ${WRKSRC}/src/Makefile.in
> 
> post-install:
> .if !defined(NOPORTDOCS)
>diff -urN /usr/ports/biology/libgenome/distinfo biology/libgenome/distinfo
>--- /usr/ports/biology/libgenome/distinfo	Tue Jul 30 19:57:06 2002
>+++ biology/libgenome/distinfo	Tue Feb  4 23:42:44 2003
>@@ -1 +1 @@
>-MD5 (libGenome-0.5.0.tar.gz) = dc4351115328a4d10fb52850ee6675d1
>+MD5 (libGenome-0.5.1.tar.gz) = da0b97fab9a374d8674a1de06a4a911c
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h biology/libgenome/files/patch-include::gn::gnCompare.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnCompare.h	Sun Dec 22 21:51:20 2002
>+++ biology/libgenome/files/patch-include::gn::gnCompare.h	Thu Jan  1 09:00:00 1970
>@@ -1,10 +0,0 @@
>---- include/gn/gnCompare.h.orig	Tue Nov 20 09:23:47 2001
>-+++ include/gn/gnCompare.h	Sun Dec 22 09:45:37 2002
>-@@ -15,6 +15,7 @@
>- 
>- #include "gn/gnDefs.h"
>- 
>-+#include <cctype>
>- #include <string>
>- #include "gn/gnClone.h"
>- 
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h biology/libgenome/files/patch-include::gn::gnException.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnException.h	Sun Dec 22 21:51:20 2002
>+++ biology/libgenome/files/patch-include::gn::gnException.h	Thu Jan  1 09:00:00 1970
>@@ -1,10 +0,0 @@
>---- include/gn/gnException.h.orig	Sat Dec  1 05:57:29 2001
>-+++ include/gn/gnException.h	Sun Dec 22 12:44:39 2002
>-@@ -4,6 +4,7 @@
>- #include "gnClone.h"
>- #include "gn/gnExceptionCode.h"
>- #include <string>
>-+#include <iostream>
>- #include <list>
>- 
>- class GNDLLEXPORT gnException
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnFastTranslator.h biology/libgenome/files/patch-include::gn::gnFastTranslator.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnFastTranslator.h	Sun Dec 29 13:44:13 2002
>+++ biology/libgenome/files/patch-include::gn::gnFastTranslator.h	Thu Jan  1 09:00:00 1970
>@@ -1,10 +0,0 @@
>---- include/gn/gnFastTranslator.h.orig	Tue Mar 19 08:52:51 2002
>-+++ include/gn/gnFastTranslator.h	Fri Dec 27 21:15:56 2002
>-@@ -17,6 +17,7 @@
>- #include "gn/gnDefs.h"
>- 
>- #include <string>
>-+#include <iostream>
>- #include <vector>
>- #include <map>
>- #include "gn/gnClone.h"
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h biology/libgenome/files/patch-include::gn::gnFileContig.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnFileContig.h	Sun Dec 22 21:51:20 2002
>+++ biology/libgenome/files/patch-include::gn::gnFileContig.h	Thu Jan  1 09:00:00 1970
>@@ -1,11 +0,0 @@
>---- include/gn/gnFileContig.h.orig	Wed Jul 18 01:52:09 2001
>-+++ include/gn/gnFileContig.h	Sun Dec 22 12:51:21 2002
>-@@ -17,7 +17,7 @@
>- 
>- #include <string>
>- #include "gn/gnClone.h"
>--#ifdef __GNUG__
>-+#if (defined(__GNUC__) && (__GNUC__) < 3)
>- #include "pair.h"
>- #endif
>- 
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h biology/libgenome/files/patch-include::gn::gnSourceHeader.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceHeader.h	Sun Dec 22 21:51:20 2002
>+++ biology/libgenome/files/patch-include::gn::gnSourceHeader.h	Thu Jan  1 09:00:00 1970
>@@ -1,11 +0,0 @@
>---- include/gn/gnSourceHeader.h.orig	Tue Oct 16 02:59:53 2001
>-+++ include/gn/gnSourceHeader.h	Sun Dec 22 12:50:29 2002
>-@@ -19,7 +19,7 @@
>- #include "gn/gnBaseHeader.h"
>- #include "gn/gnBaseSource.h"
>- 
>--#ifdef __GNUG__
>-+#if (defined(__GNUC__) && (__GNUC__) < 3)
>- #include "pair.h"
>- #endif
>- 
>diff -urN /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h biology/libgenome/files/patch-include::gn::gnSourceQualifier.h
>--- /usr/ports/biology/libgenome/files/patch-include::gn::gnSourceQualifier.h	Sun Dec 22 21:51:20 2002
>+++ biology/libgenome/files/patch-include::gn::gnSourceQualifier.h	Thu Jan  1 09:00:00 1970
>@@ -1,11 +0,0 @@
>---- include/gn/gnSourceQualifier.h.orig	Tue Oct 16 02:59:53 2001
>-+++ include/gn/gnSourceQualifier.h	Sun Dec 22 12:48:20 2002
>-@@ -19,7 +19,7 @@
>- #include "gn/gnBaseQualifier.h"
>- #include "gn/gnBaseSource.h"
>- 
>--#ifdef __GNUG__
>-+#if (defined(__GNUC__) && (__GNUC__) < 3)
>- #include "pair.h"
>- #endif
>-

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