FreeBSD Bugzilla – Attachment 29399 Details for
Bug 49093
update ports/biology/act to latest release (v2)
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[patch]
act.diff
act.diff (text/plain), 113.03 KB, created by
Fernan Aguero
on 2003-03-11 05:00:22 UTC
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Description:
act.diff
Filename:
MIME Type:
Creator:
Fernan Aguero
Created:
2003-03-11 05:00:22 UTC
Size:
113.03 KB
patch
obsolete
>diff -ruN act/Makefile act.new/Makefile >--- act/Makefile Fri Feb 21 16:37:22 2003 >+++ act.new/Makefile Mon Mar 10 15:28:31 2003 >@@ -1,15 +1,15 @@ > # New ports collection makefile for: artemis >-# Date created: 11 Mar 2002 >-# Whom: chuynh@bilateral.com.au >+# Date created: 10 Mar 2003 >+# Whom: fernan@iib.unsam.edu.ar > # > # $FreeBSD: ports/biology/act/Makefile,v 1.2 2003/02/21 11:01:31 knu Exp $ > # > > PORTNAME= act >-PORTVERSION= 1.0 >+PORTVERSION= 2.0 > CATEGORIES= biology >-MASTER_SITES= http://www.sanger.ac.uk/Software/ACT/v1/ >-DISTNAME= act_compiled_v1 >+MASTER_SITES= http://www.sanger.ac.uk/Software/ACT/v2/ >+DISTNAME= act_compiled_v2 > > MAINTAINER= chuynh@biolateral.com.au > COMMENT= A DNA sequence comparison viewer based on Artemis >diff -ruN act/distinfo act.new/distinfo >--- act/distinfo Thu Jan 16 11:22:59 2003 >+++ act.new/distinfo Mon Mar 10 15:17:38 2003 >@@ -1 +1 @@ >-MD5 (act_compiled_v1.tar.gz) = 30e263c6507007d866a24b59c0767d77 >+MD5 (act_compiled_v2.tar.gz) = 7029fb9ac1beb63679a41cfea788e4f5 >diff -ruN act/pkg-plist act.new/pkg-plist >--- act/pkg-plist Thu Jan 16 11:22:59 2003 >+++ act.new/pkg-plist Mon Mar 10 16:39:41 2003 >@@ -1,983 +1,1598 @@ >-act-1.0/CVS/Root >-act-1.0/CVS/Repository >-act-1.0/CVS/Entries >-act-1.0/.cvsignore >-act-1.0/AppGlobal.java >-act-1.0/Dad.java >-act-1.0/Makefile >-act-1.0/act >-act-1.0/META-INF/CVS/Root >-act-1.0/META-INF/CVS/Repository >-act-1.0/META-INF/CVS/Entries >-act-1.0/META-INF/MANIFEST.MF >-act-1.0/uk/CVS/Root >-act-1.0/uk/CVS/Repository >-act-1.0/uk/CVS/Entries >-act-1.0/uk/ac/CVS/Root >-act-1.0/uk/ac/CVS/Repository >-act-1.0/uk/ac/CVS/Entries >-act-1.0/uk/ac/sanger/CVS/Root >-act-1.0/uk/ac/sanger/CVS/Repository >-act-1.0/uk/ac/sanger/CVS/Entries >-act-1.0/uk/ac/sanger/pathogens/CVS/Root >-act-1.0/uk/ac/sanger/pathogens/CVS/Repository >-act-1.0/uk/ac/sanger/pathogens/CVS/Entries >-act-1.0/uk/ac/sanger/pathogens/Document.java >-act-1.0/uk/ac/sanger/pathogens/FastVector.java >-act-1.0/uk/ac/sanger/pathogens/FileDocument.java >-act-1.0/uk/ac/sanger/pathogens/FileProgressDocument.java >-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java >-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java >-act-1.0/uk/ac/sanger/pathogens/OutOfRangeException.java >-act-1.0/uk/ac/sanger/pathogens/ProgressInputStream.java >-act-1.0/uk/ac/sanger/pathogens/ReadOnlyException.java >-act-1.0/uk/ac/sanger/pathogens/StringVector.java >-act-1.0/uk/ac/sanger/pathogens/URLDocument.java >-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Root >-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Repository >-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Entries >-act-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.java >-act-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java >-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java >-act-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.java >-act-1.0/uk/ac/sanger/pathogens/embl/Entry.java >-act-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.java >-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.java >-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java >-act-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/Feature.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java >-act-1.0/uk/ac/sanger/pathogens/embl/Key.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.java >-act-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java >-act-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.java >-act-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java >-act-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java >-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java >-act-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java >-act-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java >-act-1.0/uk/ac/sanger/pathogens/embl/KeyVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/LineGroup.java >-act-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java >-act-1.0/uk/ac/sanger/pathogens/embl/Location.java >-act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.java >-act-1.0/uk/ac/sanger/pathogens/embl/Qualifier.java >-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.java >-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java >-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.java >-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java >-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java >-act-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java >-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/PushBackException.java >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/Range.java >-act-1.0/uk/ac/sanger/pathogens/embl/RangeVector.java >-act-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java >-act-1.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/Sequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java >-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java >-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.java >-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java >-act-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java >-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.java >-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java >-act-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.java >-act-1.0/uk/ac/sanger/pathogens/embl/embl.example >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class >-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class 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>+act-2.0/nsdb/InexactLocationHolder.java >+act-2.0/nsdb/InexactLocationHelper.java >+act-2.0/nsdb/EntryInfo.java >+act-2.0/nsdb/EntryInfoOperations.java >+act-2.0/nsdb/EntryInfoHelper.java >+act-2.0/nsdb/EntryInfoHolder.java >+act-2.0/nsdb/_EntryInfoStub.java >+act-2.0/nsdb/EntryInfoPOA.java >+act-2.0/nsdb/EntryInfoPOATie.java >+act-2.0/nsdb/Location.java >+act-2.0/nsdb/LocationOperations.java >+act-2.0/nsdb/LocationHelper.java >+act-2.0/nsdb/LocationHolder.java >+act-2.0/nsdb/_LocationStub.java >+act-2.0/nsdb/LocationPOA.java >+act-2.0/nsdb/LocationPOATie.java >+act-2.0/nsdb/LocationPackage/IdListHolder.java >+act-2.0/nsdb/LocationPackage/IdListHelper.java >+act-2.0/nsdb/LocationPackage/LocNodeTypeCodeHelper.java >+act-2.0/nsdb/LocationPackage/LocVirtualSegment.java >+act-2.0/nsdb/LocationPackage/LocVirtualSegmentHolder.java >+act-2.0/nsdb/LocationPackage/LocVirtualSegmentHelper.java >+act-2.0/nsdb/LocationPackage/LocGapHolder.java >+act-2.0/nsdb/LocationPackage/LocGapHelper.java >+act-2.0/nsdb/LocationPackage/LocPhysicalSegmentHolder.java >+act-2.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.java >+act-2.0/nsdb/LocationPackage/LocOperator.java >+act-2.0/nsdb/LocationPackage/LocOperatorHolder.java >+act-2.0/nsdb/LocationPackage/LocOperatorHelper.java >+act-2.0/nsdb/LocationPackage/LocationNode_u.java >+act-2.0/nsdb/LocationPackage/LocOperator.class >+act-2.0/nsdb/LocationPackage/LocationNode_uHolder.java >+act-2.0/nsdb/LocationPackage/LocationNode_uHelper.java >+act-2.0/nsdb/LocationPackage/LocationNodeListHolder.java >+act-2.0/nsdb/LocationPackage/LocationNodeListHelper.java >+act-2.0/nsdb/LocationPackage/LocationNode_u.class >+act-2.0/nsdb/LocationPackage/LocVirtualSegment.class >+act-2.0/nsdb/LocationPackage/LocationNodeListHelper.class >+act-2.0/nsdb/LocationPackage/LocationNode_uHelper.class >+act-2.0/nsdb/LocationPackage/LocOperatorHelper.class >+act-2.0/nsdb/LocationPackage/LocGapHelper.class >+act-2.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.class >+act-2.0/nsdb/LocationPackage/LocVirtualSegmentHelper.class >+act-2.0/nsdb/LocationPackage/IdListHelper.class >+act-2.0/nsdb/FeatureLocation.java >+act-2.0/nsdb/FeatureLocationOperations.java >+act-2.0/nsdb/FeatureLocationPOA.java >+act-2.0/nsdb/FeatureLocationHelper.java >+act-2.0/nsdb/FeatureLocationHolder.java >+act-2.0/nsdb/_FeatureLocationStub.java >+act-2.0/nsdb/FeatureLocationPOATie.java >+act-2.0/nsdb/NucFeature.java >+act-2.0/nsdb/NucFeaturePOA.java >+act-2.0/nsdb/NucFeatureOperations.java >+act-2.0/nsdb/NucFeatureHelper.java >+act-2.0/nsdb/NucFeatureHolder.java >+act-2.0/nsdb/_NucFeatureStub.java >+act-2.0/nsdb/NucFeaturePOATie.java >+act-2.0/nsdb/NucFeaturePackage/QualifierTypeCodeHelper.java >+act-2.0/nsdb/NucFeaturePackage/QualifierValue_u.java >+act-2.0/nsdb/NucFeaturePackage/QualifierValue_uHolder.java >+act-2.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.java >+act-2.0/nsdb/NucFeaturePackage/QualifierValueListHolder.java >+act-2.0/nsdb/NucFeaturePackage/QualifierValueListHelper.java >+act-2.0/nsdb/NucFeaturePackage/Qualifier.java >+act-2.0/nsdb/NucFeaturePackage/QualifierHolder.java >+act-2.0/nsdb/NucFeaturePackage/QualifierHelper.java >+act-2.0/nsdb/NucFeaturePackage/QualifierListHolder.java >+act-2.0/nsdb/NucFeaturePackage/QualifierListHelper.java >+act-2.0/nsdb/NucFeaturePackage/Qualifier.class >+act-2.0/nsdb/NucFeaturePackage/QualifierValue_u.class >+act-2.0/nsdb/NucFeaturePackage/QualifierListHelper.class >+act-2.0/nsdb/NucFeaturePackage/QualifierHelper.class >+act-2.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.class >+act-2.0/nsdb/NucFeaturePackage/QualifierValueListHelper.class >+act-2.0/nsdb/NucSeq.java >+act-2.0/nsdb/NucSeqOperations.java >+act-2.0/nsdb/NucSeqHelper.java >+act-2.0/nsdb/NucSeqHolder.java >+act-2.0/nsdb/_NucSeqStub.java >+act-2.0/nsdb/NucSeqPOA.java >+act-2.0/nsdb/NucSeqPOATie.java >+act-2.0/nsdb/Embl.java >+act-2.0/nsdb/EmblSeq.java >+act-2.0/nsdb/EmblSeqOperations.java >+act-2.0/nsdb/EmblSeqHelper.java >+act-2.0/nsdb/EmblSeqHolder.java >+act-2.0/nsdb/_EmblSeqStub.java >+act-2.0/nsdb/EmblSeqPOA.java >+act-2.0/nsdb/EmblSeqPOATie.java >+act-2.0/nsdb/EmblOperations.java >+act-2.0/nsdb/EmblHelper.java >+act-2.0/nsdb/EmblHolder.java >+act-2.0/nsdb/_EmblStub.java >+act-2.0/nsdb/EmblPOA.java >+act-2.0/nsdb/EmblPOATie.java >+act-2.0/nsdb/EmblPackage/Superceded.java >+act-2.0/nsdb/EmblPackage/SupercededHolder.java >+act-2.0/nsdb/EmblPackage/SupercededHelper.java >+act-2.0/nsdb/EmblPackage/Superceded.class >+act-2.0/nsdb/EmblPackage/SupercededHelper.class >+act-2.0/nsdb/OutOfDate.java >+act-2.0/nsdb/LocationParse.java >+act-2.0/nsdb/OutOfDateHolder.java >+act-2.0/nsdb/OutOfDateHelper.java >+act-2.0/nsdb/ReadOnlyException.java >+act-2.0/nsdb/ReadOnlyExceptionHolder.java >+act-2.0/nsdb/ReadOnlyExceptionHelper.java >+act-2.0/nsdb/LocationParseHolder.java >+act-2.0/nsdb/LocationParseHelper.java >+act-2.0/nsdb/QualifierParse.java >+act-2.0/nsdb/QualifierParseHolder.java >+act-2.0/nsdb/QualifierParseHelper.java >+act-2.0/nsdb/InvalidQualifier.java >+act-2.0/nsdb/InvalidQualifierHolder.java >+act-2.0/nsdb/InvalidQualifierHelper.java >+act-2.0/nsdb/NucFeatureWriterListHolder.java >+act-2.0/nsdb/Embl.class >+act-2.0/nsdb/NucFeatureWriterListHelper.java >+act-2.0/nsdb/datestamp_tHelper.java >+act-2.0/nsdb/Datestamp.java >+act-2.0/nsdb/DatestampHolder.java >+act-2.0/nsdb/DatestampHelper.java >+act-2.0/nsdb/EntryStats.java >+act-2.0/nsdb/EntryStatsHolder.java >+act-2.0/nsdb/EntryStatsHelper.java >+act-2.0/nsdb/ServerInfo.java >+act-2.0/nsdb/EmblWriter.java >+act-2.0/nsdb/ServerInfoHolder.java >+act-2.0/nsdb/ServerInfoHelper.java >+act-2.0/nsdb/EmblWriterOperations.java >+act-2.0/nsdb/EmblWriterHelper.java >+act-2.0/nsdb/EmblWriterHolder.java >+act-2.0/nsdb/_EmblWriterStub.java >+act-2.0/nsdb/EmblWriterPOA.java >+act-2.0/nsdb/EmblWriterPOATie.java >+act-2.0/nsdb/InvalidKey.java >+act-2.0/nsdb/InvalidKeyHolder.java >+act-2.0/nsdb/InvalidKeyHelper.java >+act-2.0/nsdb/CommitFailed.java >+act-2.0/nsdb/CommitFailedHolder.java >+act-2.0/nsdb/CommitFailedHelper.java >+act-2.0/nsdb/EmblSeqWriter.java >+act-2.0/nsdb/EmblSeqWriterOperations.java >+act-2.0/nsdb/EmblSeqWriterHelper.java >+act-2.0/nsdb/EmblSeqWriterHolder.java >+act-2.0/nsdb/_EmblSeqWriterStub.java >+act-2.0/nsdb/EmblSeqWriterPOA.java >+act-2.0/nsdb/EmblSeqWriterPOATie.java >+act-2.0/nsdb/NucFeatureWriter.java >+act-2.0/nsdb/NucFeatureWriterOperations.java >+act-2.0/nsdb/NucFeatureWriterHelper.java >+act-2.0/nsdb/NucFeatureWriterHolder.java >+act-2.0/nsdb/_NucFeatureWriterStub.java >+act-2.0/nsdb/NucFeatureWriterPOA.java >+act-2.0/nsdb/NucFeatureWriterPOATie.java >+act-2.0/nsdb/EntryInfoOperations.class >+act-2.0/nsdb/EntryInfo.class >+act-2.0/nsdb/NucSeqOperations.class >+act-2.0/nsdb/NucSeq.class >+act-2.0/nsdb/EmblSeqOperations.class >+act-2.0/nsdb/EmblSeq.class >+act-2.0/nsdb/EmblOperations.class >+act-2.0/nsdb/InexactLocation.class >+act-2.0/nsdb/LocationOperations.class >+act-2.0/nsdb/Location.class >+act-2.0/nsdb/NucFeatureOperations.class >+act-2.0/nsdb/NucFeature.class >+act-2.0/nsdb/FeatureLocationOperations.class >+act-2.0/nsdb/FeatureLocation.class >+act-2.0/nsdb/EntryStats.class >+act-2.0/nsdb/ServerInfo.class >+act-2.0/nsdb/EmblWriterOperations.class >+act-2.0/nsdb/EmblWriter.class >+act-2.0/nsdb/EmblSeqWriterOperations.class >+act-2.0/nsdb/EmblSeqWriter.class >+act-2.0/nsdb/Datestamp.class >+act-2.0/nsdb/CommitFailed.class >+act-2.0/nsdb/ReadOnlyException.class >+act-2.0/nsdb/InvalidKey.class >+act-2.0/nsdb/LocationParse.class >+act-2.0/nsdb/OutOfDate.class >+act-2.0/nsdb/NucFeatureWriterOperations.class >+act-2.0/nsdb/NucFeatureWriter.class >+act-2.0/nsdb/InvalidQualifier.class >+act-2.0/nsdb/QualifierParse.class >+act-2.0/nsdb/EmblWriterHelper.class >+act-2.0/nsdb/EmblHelper.class >+act-2.0/nsdb/InexactLocationHelper.class >+act-2.0/nsdb/CommitFailedHelper.class >+act-2.0/nsdb/_EmblStub.class >+act-2.0/nsdb/LocationParseHelper.class >+act-2.0/nsdb/QualifierParseHelper.class >+act-2.0/nsdb/_EmblWriterStub.class >+act-2.0/nsdb/EmblSeqWriterHelper.class >+act-2.0/nsdb/NucFeatureWriterHelper.class >+act-2.0/nsdb/ServerInfoHelper.class >+act-2.0/nsdb/EmblSeqHelper.class >+act-2.0/nsdb/_EmblSeqWriterStub.class >+act-2.0/nsdb/_NucFeatureWriterStub.class >+act-2.0/nsdb/EntryStatsHelper.class >+act-2.0/nsdb/_EmblSeqStub.class >+act-2.0/nsdb/NucFeatureListHelper.class >+act-2.0/nsdb/DatestampHelper.class >+act-2.0/nsdb/NucFeatureHelper.class >+act-2.0/nsdb/ReadOnlyExceptionHelper.class >+act-2.0/nsdb/LocationHelper.class >+act-2.0/nsdb/InvalidKeyHelper.class >+act-2.0/nsdb/InvalidQualifierHelper.class >+act-2.0/nsdb/OutOfDateHelper.class >+act-2.0/nsdb/FeatureLocationHelper.class >+act-2.0/nsdb/_NucFeatureStub.class >+act-2.0/nsdb/_LocationStub.class >+act-2.0/nsdb/_FeatureLocationStub.class >+act-2.0/seqdb/BioSeq.java >+act-2.0/seqdb/BioSeqOperations.java >+act-2.0/seqdb/BioSeqHelper.java >+act-2.0/seqdb/BioSeqHolder.java >+act-2.0/seqdb/_BioSeqStub.java >+act-2.0/seqdb/BioSeqPOA.java >+act-2.0/seqdb/BioSeqPOATie.java >+act-2.0/seqdb/Feature.java >+act-2.0/seqdb/FeatureOperations.java >+act-2.0/seqdb/FeatureHelper.java >+act-2.0/seqdb/FeatureHolder.java >+act-2.0/seqdb/_FeatureStub.java >+act-2.0/seqdb/FeaturePOA.java >+act-2.0/seqdb/FeaturePOATie.java >+act-2.0/seqdb/SeqInfo.java >+act-2.0/seqdb/SeqInfoOperations.java >+act-2.0/seqdb/SeqInfoHelper.java >+act-2.0/seqdb/SeqInfoPOA.java >+act-2.0/seqdb/SeqInfoHolder.java >+act-2.0/seqdb/_SeqInfoStub.java >+act-2.0/seqdb/SeqInfoPOATie.java >+act-2.0/seqdb/SeqInfoOperations.class >+act-2.0/seqdb/SeqInfo.class >+act-2.0/seqdb/BioSeqOperations.class >+act-2.0/seqdb/BioSeq.class >+act-2.0/seqdb/FeatureOperations.class >+act-2.0/seqdb/Feature.class >+act-2.0/Ensembl/artemis/RequestedSequenceTooLong.java >+act-2.0/Ensembl/artemis/RequestedSequenceTooLongHolder.java >+act-2.0/Ensembl/artemis/RequestedSequenceTooLongHelper.java >+act-2.0/Ensembl/artemis/NoEntry.java >+act-2.0/Ensembl/artemis/NoEntryHolder.java >+act-2.0/Ensembl/artemis/NoEntryHelper.java >+act-2.0/Ensembl/artemis/BioSequence.java >+act-2.0/Ensembl/artemis/BioSequenceOperations.java >+act-2.0/Ensembl/artemis/BioSequenceHelper.java >+act-2.0/Ensembl/artemis/BioSequenceHolder.java >+act-2.0/Ensembl/artemis/_BioSequenceStub.java >+act-2.0/Ensembl/artemis/BioSequencePOA.java >+act-2.0/Ensembl/artemis/BioSequencePOATie.java >+act-2.0/Ensembl/artemis/Qualifier.java >+act-2.0/Ensembl/artemis/QualifierHolder.java >+act-2.0/Ensembl/artemis/QualifierHelper.java >+act-2.0/Ensembl/artemis/QualifierListHolder.java >+act-2.0/Ensembl/artemis/QualifierListHelper.java >+act-2.0/Ensembl/artemis/Feature.java >+act-2.0/Ensembl/artemis/FeatureOperations.java >+act-2.0/Ensembl/artemis/FeatureHelper.java >+act-2.0/Ensembl/artemis/FeatureHolder.java >+act-2.0/Ensembl/artemis/_FeatureStub.java >+act-2.0/Ensembl/artemis/FeaturePOA.java >+act-2.0/Ensembl/artemis/DB.java >+act-2.0/Ensembl/artemis/FeaturePOATie.java >+act-2.0/Ensembl/artemis/FeatureListHolder.java >+act-2.0/Ensembl/artemis/FeatureListHelper.java >+act-2.0/Ensembl/artemis/Entry.java >+act-2.0/Ensembl/artemis/EntryOperations.java >+act-2.0/Ensembl/artemis/EntryHelper.java >+act-2.0/Ensembl/artemis/EntryHolder.java >+act-2.0/Ensembl/artemis/_EntryStub.java >+act-2.0/Ensembl/artemis/EntryPOA.java >+act-2.0/Ensembl/artemis/EntryPOATie.java >+act-2.0/Ensembl/artemis/QualifierDefinitionListHolder.java >+act-2.0/Ensembl/artemis/QualifierDefinitionListHelper.java >+act-2.0/Ensembl/artemis/FeatureDefinition.java >+act-2.0/Ensembl/artemis/FeatureDefinitionHolder.java >+act-2.0/Ensembl/artemis/FeatureDefinitionHelper.java >+act-2.0/Ensembl/artemis/FeatureDefinitionListHolder.java >+act-2.0/Ensembl/artemis/FeatureDefinitionListHelper.java >+act-2.0/Ensembl/artemis/EntryNameListHolder.java >+act-2.0/Ensembl/artemis/EntryNameListHelper.java >+act-2.0/Ensembl/artemis/DBOperations.java >+act-2.0/Ensembl/artemis/DBHelper.java >+act-2.0/Ensembl/artemis/DBHolder.java >+act-2.0/Ensembl/artemis/_DBStub.java >+act-2.0/Ensembl/artemis/DBPOA.java >+act-2.0/Ensembl/artemis/DBPOATie.java >+act-2.0/Dad.class >+act-2.0/AppGlobal.class > bin/act >-@dirrm act-1.0/CVS >-@dirrm act-1.0/META-INF/CVS >-@dirrm act-1.0/META-INF >-@dirrm act-1.0/uk/CVS >-@dirrm act-1.0/uk/ac/CVS >-@dirrm act-1.0/uk/ac/sanger/CVS >-@dirrm act-1.0/uk/ac/sanger/pathogens/CVS >-@dirrm act-1.0/uk/ac/sanger/pathogens/embl/CVS >-@dirrm act-1.0/uk/ac/sanger/pathogens/embl >-@dirrm act-1.0/uk/ac/sanger/pathogens >-@dirrm act-1.0/uk/ac/sanger >-@dirrm act-1.0/uk/ac >-@dirrm act-1.0/uk >-@dirrm act-1.0/diana/CVS >-@dirrm act-1.0/diana/plot/CVS >-@dirrm act-1.0/diana/plot >-@dirrm act-1.0/diana/components/CVS >-@dirrm act-1.0/diana/components >-@dirrm act-1.0/diana/sequence/CVS >-@dirrm act-1.0/diana/sequence >-@dirrm act-1.0/diana >-@dirrm act-1.0/etc/CVS >-@dirrm act-1.0/etc >-@dirrm act-1.0/collections/CVS >-@dirrm act-1.0/collections >-@dirrm act-1.0 >+@dirrm act-2.0/CVS >+@dirrm act-2.0/META-INF/CVS >+@dirrm act-2.0/META-INF >+@dirrm act-2.0/diana/CVS >+@dirrm act-2.0/diana/plot/CVS >+@dirrm act-2.0/diana/plot >+@dirrm act-2.0/diana/components/CVS >+@dirrm act-2.0/diana/components >+@dirrm act-2.0/diana/sequence/CVS >+@dirrm act-2.0/diana/sequence >+@dirrm act-2.0/diana >+@dirrm act-2.0/corba/CVS >+@dirrm act-2.0/corba >+@dirrm act-2.0/etc/CVS >+@dirrm act-2.0/etc >+@dirrm act-2.0/uk/CVS >+@dirrm act-2.0/uk/ac/CVS >+@dirrm act-2.0/uk/ac/sanger/CVS >+@dirrm act-2.0/uk/ac/sanger/pathogens/CVS >+@dirrm act-2.0/uk/ac/sanger/pathogens/embl/CVS >+@dirrm act-2.0/uk/ac/sanger/pathogens/embl >+@dirrm act-2.0/uk/ac/sanger/pathogens >+@dirrm act-2.0/uk/ac/sanger >+@dirrm act-2.0/uk/ac >+@dirrm act-2.0/uk >+@dirrm act-2.0/lib/CVS >+@dirrm act-2.0/lib >+@dirrm act-2.0/collections/CVS >+@dirrm act-2.0/collections >+@dirrm act-2.0/type >+@dirrm act-2.0/nsdb/LocationPackage >+@dirrm act-2.0/nsdb/NucFeaturePackage >+@dirrm act-2.0/nsdb/EmblPackage >+@dirrm act-2.0/nsdb >+@dirrm act-2.0/seqdb >+@dirrm act-2.0/Ensembl/artemis >+@dirrm act-2.0/Ensembl >+@dirrm act-2.0
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