FreeBSD Bugzilla – Attachment 49971 Details for
Bug 76219
[ update ] biology/artemis to v6
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[patch]
artemis.diff
artemis.diff (text/plain), 171.59 KB, created by
Fernan Aguero
on 2005-01-13 19:40:29 UTC
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Description:
artemis.diff
Filename:
MIME Type:
Creator:
Fernan Aguero
Created:
2005-01-13 19:40:29 UTC
Size:
171.59 KB
patch
obsolete
>diff -ruN /usr/ports/biology/artemis/Makefile artemis/Makefile >--- /usr/ports/biology/artemis/Makefile Sat Feb 7 01:04:33 2004 >+++ artemis/Makefile Thu Jan 13 10:53:23 2005 >@@ -6,30 +6,27 @@ > # > > PORTNAME= artemis >-PORTVERSION= 4.0 >-PORTREVISION= 1 >+PORTVERSION= 6 > CATEGORIES= biology >-MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v4/ >-DISTNAME= artemis_compiled_v4 >+MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/ >+DISTNAME= artemis_compiled_v${PORTVERSION} > > MAINTAINER= chuynh@biolateral.com.au > COMMENT= A DNA sequence viewer and annotation tool > >-RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 >- > WRKSRC= ${WRKDIR}/${PORTNAME} > >-JDK_VERSION= 1.3.1 >-JDK_DIR= ${PREFIX}/jdk${JDK_VERSION} >-JAVA_COMMAND= ${JDK_DIR}/bin/java >+USE_JAVA= yes >+JAVA_VERSION= 1.4+ >+JAVA_RUN= yes > > NO_BUILD= yes >+PLIST_SUB= PORTVERSION="${PORTVERSION}" > > do-install: > @${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION} > @${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf- > @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/art ${PREFIX}/bin/art >- >-PLIST_SUB= PORTVERSION="${PORTVERSION}" >+ @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act > > .include <bsd.port.mk> >diff -ruN /usr/ports/biology/artemis/distinfo artemis/distinfo >--- /usr/ports/biology/artemis/distinfo Sat Apr 3 01:03:35 2004 >+++ artemis/distinfo Tue Jan 11 15:32:32 2005 >@@ -1,2 +1,2 @@ >-MD5 (artemis_compiled_v4.tar.gz) = e970b57e993a6b6d254ae70f83e1304e >-SIZE (artemis_compiled_v4.tar.gz) = 4773345 >+MD5 (artemis_compiled_v6.tar.gz) = 5ebd3db7edbb74eab5a84df9c693d4e1 >+SIZE (artemis_compiled_v6.tar.gz) = 3947732 >diff -ruN /usr/ports/biology/artemis/pkg-descr artemis/pkg-descr >--- /usr/ports/biology/artemis/pkg-descr Sat Dec 22 11:39:40 2001 >+++ artemis/pkg-descr Thu Jan 13 10:55:11 2005 >@@ -1,7 +1,13 @@ >-Artemis is a DNA sequence viewer and annotation tool that allows visualisation >-of sequence features and the results of analyses within the context of the >-sequence, and its six-frame translation. Artemis is written in Java, reads >-EMBL or GENBANK format sequences and feature tables, and can work on sequences >-of any size. >+Artemis is a DNA sequence viewer and annotation tool that allows >+visualisation of sequence features and the results of analyses within >+the context of the sequence, and its six-frame translation. Artemis is >+written in Java, reads EMBL or GENBANK format sequences and feature >+tables, and can work on sequences of any size. > >-WWW: http://www.sanger.ac.uk/Software/Artemis/manual >+ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based >+on Artemis. It can open two or more sequences (and their >+annotations/features) together with their comparisons (usually the >+result of running blastn or tblastx searches). >+ >+WWW: http://www.sanger.ac.uk/Software/Artemis/manual >+WWW: http://www.sanger.ac.uk/Software/ACT/manual >diff -ruN /usr/ports/biology/artemis/pkg-plist artemis/pkg-plist >--- /usr/ports/biology/artemis/pkg-plist Sat Dec 22 11:39:40 2001 >+++ artemis/pkg-plist Tue Jan 11 15:51:20 2005 >@@ -1,1486 +1,1507 @@ >-artemis-4.0/CVS/Root >-artemis-4.0/CVS/Repository >-artemis-4.0/CVS/Entries >-artemis-4.0/.cvsignore >-artemis-4.0/AppGlobal.java >-artemis-4.0/COPYING >-artemis-4.0/COPYING.JacORB >-artemis-4.0/CorbaApplet.java >-artemis-4.0/Diana.java >-artemis-4.0/INSTALL >-artemis-4.0/Makefile >-artemis-4.0/README >-artemis-4.0/art >-artemis-4.0/art.bat >-artemis-4.0/mart >-artemis-4.0/results_to_netscape >-artemis-4.0/run_blast >-artemis-4.0/run_blastn >-artemis-4.0/run_blastp >-artemis-4.0/run_blastx >-artemis-4.0/run_fasta >-artemis-4.0/run_hth >-artemis-4.0/run_jalview >-artemis-4.0/run_sigcleave >-artemis-4.0/run_tblastn >-artemis-4.0/run_tblastx >-artemis-4.0/META-INF/CVS/Root >-artemis-4.0/META-INF/CVS/Repository >-artemis-4.0/META-INF/CVS/Entries >-artemis-4.0/META-INF/MANIFEST.MF >-artemis-4.0/collections/CVS/Root >-artemis-4.0/collections/CVS/Repository >-artemis-4.0/collections/CVS/Entries >-artemis-4.0/collections/ArrayEnumeration.java >-artemis-4.0/collections/Assertable.java >-artemis-4.0/collections/Bag.java >-artemis-4.0/collections/BinaryFunction.java >-artemis-4.0/collections/CEImpl.java >-artemis-4.0/collections/CLCell.java >-artemis-4.0/collections/CLEnumeration.java >-artemis-4.0/collections/Cell.java >-artemis-4.0/collections/CheckedBag.java >-artemis-4.0/collections/CheckedCollection.java >-artemis-4.0/collections/CheckedMap.java >-artemis-4.0/collections/CheckedSeq.java >-artemis-4.0/collections/CheckedSet.java >-artemis-4.0/collections/Keyed.java >-artemis-4.0/collections/CircularList.java >-artemis-4.0/collections/Collection.java >-artemis-4.0/collections/CollectionEnumeration.java >-artemis-4.0/collections/Comparator.java >-artemis-4.0/collections/Dynarray.java >-artemis-4.0/collections/CorruptedEnumerationException.java >-artemis-4.0/collections/DAEnumeration.java >-artemis-4.0/collections/DefaultComparator.java >-artemis-4.0/collections/DefaultImplementations.java >-artemis-4.0/collections/ElementSortedCollection.java >-artemis-4.0/collections/FilteringEnumeration.java >-artemis-4.0/collections/Function.java >-artemis-4.0/collections/HTEnumeration.java >-artemis-4.0/collections/HTPairEnumeration.java >-artemis-4.0/collections/HashTableParams.java >-artemis-4.0/collections/HashedMap.java >-artemis-4.0/collections/HashedSet.java >-artemis-4.0/collections/IllegalElementException.java >-artemis-4.0/collections/Immutable.java >-artemis-4.0/collections/ImplementationCheckable.java >-artemis-4.0/collections/IncrBag.java >-artemis-4.0/collections/ImplementationError.java >-artemis-4.0/collections/IncrCollectionEnumeration.java >-artemis-4.0/collections/IncrImpl.java >-artemis-4.0/collections/IncrMap.java >-artemis-4.0/collections/IncrSeq.java >-artemis-4.0/collections/IncrSet.java >-artemis-4.0/collections/InterleavingEnumeration.java >-artemis-4.0/collections/KeySortedCollection.java >-artemis-4.0/collections/LBEnumeration.java >-artemis-4.0/collections/LLCell.java >-artemis-4.0/collections/LLCellEnumeration.java >-artemis-4.0/collections/LLMap.java >-artemis-4.0/collections/LLPair.java >-artemis-4.0/collections/LLPairEnumeration.java >-artemis-4.0/collections/LinkedBuffer.java >-artemis-4.0/collections/LinkedList.java >-artemis-4.0/collections/Map.java >-artemis-4.0/collections/MappingEnumeration.java >-artemis-4.0/collections/Pair.java >-artemis-4.0/collections/Predicate.java >-artemis-4.0/collections/Procedure.java >-artemis-4.0/collections/RBCell.java >-artemis-4.0/collections/RBCellEnumeration.java >-artemis-4.0/collections/RBMap.java >-artemis-4.0/collections/RBPair.java >-artemis-4.0/collections/RBPairEnumeration.java >-artemis-4.0/collections/RBTree.java >-artemis-4.0/collections/Seq.java >-artemis-4.0/collections/Set.java >-artemis-4.0/collections/SimpleTest.java >-artemis-4.0/collections/SortableCollection.java >-artemis-4.0/collections/UpdatableBag.java >-artemis-4.0/collections/UpdatableBagImpl.java >-artemis-4.0/collections/UpdatableCollection.java >-artemis-4.0/collections/UpdatableImpl.java >-artemis-4.0/collections/UpdatableMap.java >-artemis-4.0/collections/UpdatableMapImpl.java >-artemis-4.0/collections/javaMake >-artemis-4.0/collections/UpdatableSeq.java >-artemis-4.0/collections/UpdatableSeqImpl.java >-artemis-4.0/collections/UpdatableSet.java >-artemis-4.0/collections/UpdatableSetImpl.java >-artemis-4.0/collections/collections_Dynarray.h >-artemis-4.0/collections/Dynarray.class >-artemis-4.0/collections/UpdatableSeqImpl.class >-artemis-4.0/collections/UpdatableSeq.class >-artemis-4.0/collections/SortableCollection.class >-artemis-4.0/collections/Seq.class >-artemis-4.0/collections/UpdatableImpl.class >-artemis-4.0/collections/UpdatableCollection.class >-artemis-4.0/collections/IllegalElementException.class >-artemis-4.0/collections/CorruptedEnumerationException.class >-artemis-4.0/collections/ImplementationError.class >-artemis-4.0/collections/Collection.class >-artemis-4.0/collections/Assertable.class >-artemis-4.0/collections/ImplementationCheckable.class >-artemis-4.0/collections/Comparator.class >-artemis-4.0/collections/Predicate.class >-artemis-4.0/collections/CollectionEnumeration.class >-artemis-4.0/collections/DAEnumeration.class >-artemis-4.0/collections/CEImpl.class >-artemis-4.0/collections/KeySortedCollection.class >-artemis-4.0/collections/Map.class >-artemis-4.0/collections/ElementSortedCollection.class >-artemis-4.0/collections/Bag.class >-artemis-4.0/collections/Set.class >-artemis-4.0/collections/RBTree.class >-artemis-4.0/collections/UpdatableBagImpl.class >-artemis-4.0/collections/UpdatableBag.class >-artemis-4.0/collections/RBCell.class >-artemis-4.0/collections/Cell.class >-artemis-4.0/collections/DefaultComparator.class >-artemis-4.0/collections/RBCellEnumeration.class >-artemis-4.0/collections/Keyed.class >-artemis-4.0/corba/CVS/Root >-artemis-4.0/corba/CVS/Repository >-artemis-4.0/corba/CVS/Entries >-artemis-4.0/corba/apollo.idl >-artemis-4.0/corba/ensembl.idl >-artemis-4.0/corba/nsdb.idl >-artemis-4.0/corba/nsdb_write.idl >-artemis-4.0/corba/seqdb.idl >-artemis-4.0/corba/types.idl >-artemis-4.0/diana/CVS/Root >-artemis-4.0/diana/CVS/Repository >-artemis-4.0/diana/CVS/Entries >-artemis-4.0/diana/AlignMatch.java >-artemis-4.0/diana/AlignMatchVector.java >-artemis-4.0/diana/ChangeEvent.java >-artemis-4.0/diana/ChangeListener.java >-artemis-4.0/diana/ClipBoard.java >-artemis-4.0/diana/ComparisonData.java >-artemis-4.0/diana/ComparisonDataFactory.java >-artemis-4.0/diana/ComparisonDataParseException.java >-artemis-4.0/diana/Entry.java >-artemis-4.0/diana/EntryChangeEvent.java >-artemis-4.0/diana/EntryChangeListener.java >-artemis-4.0/diana/EntryGroup.java >-artemis-4.0/diana/EntryGroupChangeEvent.java >-artemis-4.0/diana/EntryGroupChangeListener.java >-artemis-4.0/diana/EntrySource.java >-artemis-4.0/diana/plot/CVS/Root >-artemis-4.0/diana/plot/CVS/Repository >-artemis-4.0/diana/plot/CVS/Entries >-artemis-4.0/diana/plot/AGWindowAlgorithm.java >-artemis-4.0/diana/plot/ATDeviationAlgorithm.java >-artemis-4.0/diana/plot/Algorithm.java >-artemis-4.0/diana/plot/BaseAlgorithm.java >-artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.java >-artemis-4.0/diana/plot/CodonUsageAlgorithm.java >-artemis-4.0/diana/plot/CodonUsageFormatException.java >-artemis-4.0/diana/plot/CodonUsageWeight.java >-artemis-4.0/diana/plot/CodonWeight.java >-artemis-4.0/diana/plot/CoilFeatureAlgorithm.java >-artemis-4.0/diana/plot/HydroAlgorithm.java >-artemis-4.0/diana/plot/FeatureAlgorithm.java >-artemis-4.0/diana/plot/GCDeviationAlgorithm.java >-artemis-4.0/diana/plot/GCFrameAlgorithm.java >-artemis-4.0/diana/plot/GCSDWindowAlgorithm.java >-artemis-4.0/diana/plot/GCWindowAlgorithm.java >-artemis-4.0/diana/plot/HydrophilicityAlgorithm.java >-artemis-4.0/diana/plot/HydrophobicityAlgorithm.java >-artemis-4.0/diana/plot/UserDataAlgorithm.java >-artemis-4.0/diana/plot/CodonUsageAlgorithm.class >-artemis-4.0/diana/plot/BaseAlgorithm.class >-artemis-4.0/diana/plot/Algorithm.class >-artemis-4.0/diana/plot/UserDataAlgorithm.class >-artemis-4.0/diana/plot/CodonUsageWeight.class >-artemis-4.0/diana/plot/CodonWeight.class >-artemis-4.0/diana/plot/GCWindowAlgorithm.class >-artemis-4.0/diana/plot/GCSDWindowAlgorithm.class >-artemis-4.0/diana/plot/AGWindowAlgorithm.class >-artemis-4.0/diana/plot/GCFrameAlgorithm.class >-artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.class >-artemis-4.0/diana/plot/GCDeviationAlgorithm.class >-artemis-4.0/diana/plot/ATDeviationAlgorithm.class >-artemis-4.0/diana/plot/CodonUsageFormatException.class >-artemis-4.0/diana/plot/FeatureAlgorithm.class >-artemis-4.0/diana/plot/HydroAlgorithm.class >-artemis-4.0/diana/plot/HydrophobicityAlgorithm.class >-artemis-4.0/diana/plot/HydrophilicityAlgorithm.class >-artemis-4.0/diana/plot/CoilFeatureAlgorithm.class >-artemis-4.0/diana/EntrySourceVector.java >-artemis-4.0/diana/EntryVector.java >-artemis-4.0/diana/ExternalApplication.java >-artemis-4.0/diana/ExternalProgram.java >-artemis-4.0/diana/ExternalProgramException.java >-artemis-4.0/diana/ExternalProgramVector.java >-artemis-4.0/diana/ExternalSearchProgram.java >-artemis-4.0/diana/Feature.java >-artemis-4.0/diana/FeatureChangeEvent.java >-artemis-4.0/diana/FeatureChangeListener.java >-artemis-4.0/diana/FeatureEnumeration.java >-artemis-4.0/diana/FeatureFromVectorPredicate.java >-artemis-4.0/diana/FeatureKeyPredicate.java >-artemis-4.0/diana/FeatureKeyQualifierPredicate.java >-artemis-4.0/diana/FeatureSegment.java >-artemis-4.0/diana/FeaturePredicate.java >-artemis-4.0/diana/FeatureSegmentVector.java >-artemis-4.0/diana/FeatureVector.java >-artemis-4.0/diana/FilteredEntryGroup.java >-artemis-4.0/diana/GotoEvent.java >-artemis-4.0/diana/GotoEventSource.java >-artemis-4.0/diana/GotoListener.java >-artemis-4.0/diana/LastSegmentException.java >-artemis-4.0/diana/Logger.java >-artemis-4.0/diana/MSPcrunchComparisonData.java >-artemis-4.0/diana/MUMmerComparisonData.java >-artemis-4.0/diana/Options.java >-artemis-4.0/diana/Selectable.java >-artemis-4.0/diana/Selection.java >-artemis-4.0/diana/SelectionChangeEvent.java >-artemis-4.0/diana/SelectionChangeListener.java >-artemis-4.0/diana/helix.gif >-artemis-4.0/diana/SimpleComparisonData.java >-artemis-4.0/diana/SimpleEntryGroup.java >-artemis-4.0/diana/SimpleGotoEventSource.java >-artemis-4.0/diana/sanger-centre.gif >-artemis-4.0/diana/components/CVS/Root >-artemis-4.0/diana/components/CVS/Repository >-artemis-4.0/diana/components/CVS/Entries >-artemis-4.0/diana/components/ActMain.java >-artemis-4.0/diana/components/AddMenu.java >-artemis-4.0/diana/components/AlignmentViewer.java >-artemis-4.0/diana/components/ArtemisMain.java >-artemis-4.0/diana/components/BasePlot.java >-artemis-4.0/diana/components/BasePlotGroup.java >-artemis-4.0/diana/components/CanvasPanel.java >-artemis-4.0/diana/components/Comparator.java >-artemis-4.0/diana/components/ComparatorDialog.java >-artemis-4.0/diana/components/CorbaEntrySource.java >-artemis-4.0/diana/components/DisplayAdjustmentEvent.java >-artemis-4.0/diana/components/DisplayAdjustmentListener.java >-artemis-4.0/diana/components/DisplayComponent.java >-artemis-4.0/diana/components/EMBLCorbaEntrySource.java >-artemis-4.0/diana/components/EditMenu.java >-artemis-4.0/diana/components/EnsemblEntrySource.java >-artemis-4.0/diana/components/EntryActionListener.java >-artemis-4.0/diana/components/EntryEdit.java >-artemis-4.0/diana/components/EntryEditVector.java >-artemis-4.0/diana/components/EntryFileDialog.java >-artemis-4.0/diana/components/EntryGroupDisplay.java >-artemis-4.0/diana/components/EntryGroupInfoDisplay.java >-artemis-4.0/diana/components/EntryGroupMenu.java >-artemis-4.0/diana/components/EntryGroupPanel.java >-artemis-4.0/diana/components/EntryHeaderEdit.java >-artemis-4.0/diana/components/ExternalProgramOptions.java >-artemis-4.0/diana/components/FeatureAminoAcidViewer.java >-artemis-4.0/diana/components/FeatureBaseViewer.java >-artemis-4.0/diana/components/FeatureDisplay.java >-artemis-4.0/diana/components/FeatureDisplayOwner.java >-artemis-4.0/diana/components/FeatureEdit.java >-artemis-4.0/diana/components/FeatureInfo.java >-artemis-4.0/diana/components/FeatureList.java >-artemis-4.0/diana/components/FeatureListFrame.java >-artemis-4.0/diana/components/FeaturePlot.java >-artemis-4.0/diana/components/FeaturePlotGroup.java >-artemis-4.0/diana/components/FeaturePopup.java >-artemis-4.0/diana/components/FeatureViewer.java >-artemis-4.0/diana/components/FileDialogEntrySource.java >-artemis-4.0/diana/components/FileViewer.java >-artemis-4.0/diana/components/GotoMenu.java >-artemis-4.0/diana/components/KeyChoice.java >-artemis-4.0/diana/components/KeyChooser.java >-artemis-4.0/diana/components/ListDialog.java >-artemis-4.0/diana/components/LogViewer.java >-artemis-4.0/diana/components/MarkerRangeRequester.java >-artemis-4.0/diana/components/MarkerRangeRequesterEvent.java >-artemis-4.0/diana/components/MarkerRangeRequesterListener.java >-artemis-4.0/diana/components/MessageDialog.java >-artemis-4.0/diana/components/MessageFrame.java >-artemis-4.0/diana/components/Navigator.java >-artemis-4.0/diana/components/Plot.java >-artemis-4.0/diana/components/PlotMouseListener.java >-artemis-4.0/diana/components/ProcessWatcher.java >-artemis-4.0/diana/components/ProcessWatcherEvent.java >-artemis-4.0/diana/components/ProcessWatcherListener.java >-artemis-4.0/diana/components/QualifierChoice.java >-artemis-4.0/diana/components/RawFeatureEdit.java >-artemis-4.0/diana/components/RunMenu.java >-artemis-4.0/diana/components/ScoreChangeEvent.java >-artemis-4.0/diana/components/ScoreChangeListener.java >-artemis-4.0/diana/components/ScoreChanger.java >-artemis-4.0/diana/components/ScoreScrollbar.java >-artemis-4.0/diana/components/SearchResultViewer.java >-artemis-4.0/diana/components/SelectMenu.java >-artemis-4.0/diana/components/SelectionInfoDisplay.java >-artemis-4.0/diana/components/SelectionMenu.java >-artemis-4.0/diana/components/SelectionViewer.java >-artemis-4.0/diana/components/Selector.java >-artemis-4.0/diana/components/SequenceViewer.java >-artemis-4.0/diana/components/Splash.java >-artemis-4.0/diana/components/TextDialog.java >-artemis-4.0/diana/components/TextRequester.java >-artemis-4.0/diana/components/TextRequesterEvent.java >-artemis-4.0/diana/components/TextRequesterListener.java >-artemis-4.0/diana/components/ViewMenu.java >-artemis-4.0/diana/components/WritableEMBLCorbaEntrySource.java >-artemis-4.0/diana/components/WriteMenu.java >-artemis-4.0/diana/components/Plot.class >-artemis-4.0/diana/components/YesNoDialog.java >-artemis-4.0/diana/components/ArtemisMain.class >-artemis-4.0/diana/components/ArtemisMain$1.class >-artemis-4.0/diana/components/ArtemisMain$2.class >-artemis-4.0/diana/components/ArtemisMain$3.class >-artemis-4.0/diana/components/ArtemisMain$4.class >-artemis-4.0/diana/components/ArtemisMain$5.class >-artemis-4.0/diana/components/ArtemisMain$6.class >-artemis-4.0/diana/components/Splash.class >-artemis-4.0/diana/components/Splash$1.class >-artemis-4.0/diana/components/Splash$2.class >-artemis-4.0/diana/components/Splash$3.class >-artemis-4.0/diana/components/EntryEditVector.class >-artemis-4.0/diana/components/LogViewer.class >-artemis-4.0/diana/components/LogViewer$1.class 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>+artemis-%%PORTVERSION%%/lib/README >+artemis-%%PORTVERSION%%/lib/biojava.jar >+artemis-%%PORTVERSION%%/lib/jakarta-regexp-1.2.jar >+artemis-%%PORTVERSION%%/lib/jemAlign.jar >+artemis-%%PORTVERSION%%/lib/jobcontrol.jar >+bin/act > bin/art >-@dirrm artemis-4.0/META-INF/CVS >-@dirrm artemis-4.0/META-INF >-@dirrm artemis-4.0/collections/CVS >-@dirrm artemis-4.0/collections >-@dirrm artemis-4.0/corba/CVS >-@dirrm artemis-4.0/corba >-@dirrm artemis-4.0/diana/CVS >-@dirrm artemis-4.0/diana/plot/CVS >-@dirrm artemis-4.0/diana/plot >-@dirrm artemis-4.0/diana/components/CVS >-@dirrm artemis-4.0/diana/components >-@dirrm artemis-4.0/diana/sequence/CVS >-@dirrm artemis-4.0/diana/sequence >-@dirrm artemis-4.0/diana >-@dirrm artemis-4.0/docs/CVS >-@dirrm artemis-4.0/docs >-@dirrm artemis-4.0/embl/CVS >-@dirrm artemis-4.0/embl >-@dirrm artemis-4.0/etc/CVS >-@dirrm artemis-4.0/etc >-@dirrm artemis-4.0/lib/CVS >-@dirrm artemis-4.0/lib >-@dirrm artemis-4.0/uk/CVS >-@dirrm artemis-4.0/uk/ac/sanger/CVS >-@dirrm artemis-4.0/uk/ac/sanger/pathogens/CVS >-@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl/CVS >-@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl >-@dirrm artemis-4.0/uk/ac/sanger/pathogens >-@dirrm artemis-4.0/uk/ac/CVS >-@dirrm artemis-4.0/uk/ac/sanger >-@dirrm artemis-4.0/uk/ac >-@dirrm artemis-4.0/uk >-@dirrm artemis-4.0/type >-@dirrm artemis-4.0/nsdb/LocationPackage >-@dirrm artemis-4.0/nsdb/NucFeaturePackage >-@dirrm artemis-4.0/nsdb/EmblPackage >-@dirrm artemis-4.0/nsdb >-@dirrm artemis-4.0/seqdb >-@dirrm artemis-4.0/Ensembl/artemis >-@dirrm artemis-4.0/Ensembl >-@dirrm artemis-4.0/CVS >-@dirrm artemis-4.0 >+@dirrm artemis-%%PORTVERSION%%/images >+@dirrm artemis-%%PORTVERSION%%/etc/CVS >+@dirrm artemis-%%PORTVERSION%%/etc >+@dirrm artemis-%%PORTVERSION%%/uk/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/CVS >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis >+@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger >+@dirrm artemis-%%PORTVERSION%%/uk/ac >+@dirrm artemis-%%PORTVERSION%%/uk >+@dirrm artemis-%%PORTVERSION%%/nsdb/LocationPackage >+@dirrm artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage >+@dirrm artemis-%%PORTVERSION%%/nsdb/EmblPackage >+@dirrm artemis-%%PORTVERSION%%/nsdb >+@dirrm artemis-%%PORTVERSION%%/type >+@dirrm artemis-%%PORTVERSION%%/seqdb >+@dirrm artemis-%%PORTVERSION%%/lib/CVS >+@dirrm artemis-%%PORTVERSION%%/lib >+@dirrm artemis-%%PORTVERSION%%
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