Attachment 92013 Details for Bug 129567 – file.shar

file.shar

file.shar (text/plain), 14.04 KB, created by wenheping on 2008-12-11 09:30:00 UTC

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Creator: wenheping

Created: 2008-12-11 09:30:00 UTC

Size: 14.04 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	py-pymc
>#	py-pymc/pkg-plist
>#	py-pymc/pkg-descr
>#	py-pymc/distinfo
>#	py-pymc/Makefile
>#
>echo c - py-pymc
>mkdir -p py-pymc > /dev/null 2>&1
>echo x - py-pymc/pkg-plist
>sed 's/^X//' >py-pymc/pkg-plist << 'b53346d5093e09b427e94645320d457d'
>X%%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.py
>X%%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/Container.py
>X%%PYTHON_SITELIBDIR%%/pymc/Container.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/Container.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/Container_values.so
>X%%PYTHON_SITELIBDIR%%/pymc/InstantiationDecorators.py
>X%%PYTHON_SITELIBDIR%%/pymc/InstantiationDecorators.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/InstantiationDecorators.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/LazyFunction.so
>X%%PYTHON_SITELIBDIR%%/pymc/MCMC.py
>X%%PYTHON_SITELIBDIR%%/pymc/MCMC.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/MCMC.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/Matplot.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/Model.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/MultiModelInference/ModelPosterior.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/MultiModelInference/ModelPosterior.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/MultiModelInference/__init__.py
>X%%PYTHON_SITELIBDIR%%/pymc/MultiModelInference/__init__.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/MultiModelInference/__init__.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/Node.py
>X%%PYTHON_SITELIBDIR%%/pymc/Node.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/Node.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/NormalApproximation.py
>X%%PYTHON_SITELIBDIR%%/pymc/NormalApproximation.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/database/__init__.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/database/base.py
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>X%%PYTHON_SITELIBDIR%%/pymc/database/base.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/database/hdf5.py
>X%%PYTHON_SITELIBDIR%%/pymc/database/hdf5.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/database/hdf5.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/database/mysql.py
>X%%PYTHON_SITELIBDIR%%/pymc/database/mysql.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/database/mysql.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/database/pickle.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/database/ram.py
>X%%PYTHON_SITELIBDIR%%/pymc/database/ram.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/database/ram.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/database/sqlite.py
>X%%PYTHON_SITELIBDIR%%/pymc/database/sqlite.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/__init__.py
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/__init__.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/custom_step.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/gelman_bioassay.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_1.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_1.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.py
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.pyo
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_2.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.py
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/examples/straightlinefit.py
>X%%PYTHON_SITELIBDIR%%/pymc/examples/straightlinefit.pyc
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>X%%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.py
>X%%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/flib.so
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>X%%PYTHON_SITELIBDIR%%/pymc/gp/BasisCovariance.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/BasisCovariance.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Covariance.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Covariance.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Covariance.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/FullRankCovariance.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/FullRankCovariance.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/FullRankCovariance.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/GPutils.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/GPutils.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/GPutils.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Mean.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Mean.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Mean.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Realization.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Realization.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/Realization.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/__init__.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/__init__.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/__init__.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/__init__.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/__init__.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/__init__.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/bases.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/bases.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/bases.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/cov_utils.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/cov_utils.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/cov_utils.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/distances.so
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/isotropic_cov_funs.so
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.py
>X%%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/gp/incomplete_chol.so
>X%%PYTHON_SITELIBDIR%%/pymc/gp/linalg_utils.so
>X%%PYTHON_SITELIBDIR%%/pymc/graph.py
>X%%PYTHON_SITELIBDIR%%/pymc/graph.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/graph.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/__init__.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/__init__.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/__init__.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/screen.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/screen.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/screen.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_adaptive.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_adaptive.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_adaptive.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_basiscov.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_basiscov.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_basiscov.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_binary_step.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_binary_step.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_binary_step.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_container.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_container.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_container.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_convergence.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_convergence.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_convergence.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_cov.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_cov.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_cov.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_database.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_database.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_database.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_instantiation.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_instantiation.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_instantiation.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_interactive.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_interactive.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_interactive.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_joint.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_joint.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_joint.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_model_ave.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_model_ave.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_model_ave.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_observation.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_observation.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_observation.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.py
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.pyo
>X%%PYTHON_SITELIBDIR%%/pymc/utils.py
>X%%PYTHON_SITELIBDIR%%/pymc/utils.pyc
>X%%PYTHON_SITELIBDIR%%/pymc/utils.pyo
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/MultiModelInference
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/database
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/examples
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/gp
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc/tests
>X@dirrm %%PYTHON_SITELIBDIR%%/pymc
>b53346d5093e09b427e94645320d457d
>echo x - py-pymc/pkg-descr
>sed 's/^X//' >py-pymc/pkg-descr << '028581d951f44e8b077ccfbd8423b8f4'
>XBayesian estimation, particularly using Markov chain Monte
>XCarlo (MCMC), is an increasingly relevant approach to
>Xstatistical estimation. However, few statistical software
>Xpackages implement MCMC samplers, and they are non-trivial
>X to code by hand. pymc is a python package that implements
>Xthe Metropolis-Hastings algorithm as a python class, and is
>Xextremely flexible and applicable to a large suite of problems.
>Xpymc includes methods for summarizing output, plotting,
>Xgoodness-of-fit and convergence diagnostics.
>X
>XWWW:	http://pypi.python.org/pypi/pymc/
>028581d951f44e8b077ccfbd8423b8f4
>echo x - py-pymc/distinfo
>sed 's/^X//' >py-pymc/distinfo << '4701a20f5e0f2e6342883d84867903f6'
>XMD5 (pymc-2.0rc1.tar.gz) = b8e8bc8e72b23a0215d10e13839738d8
>XSHA256 (pymc-2.0rc1.tar.gz) = fdb7b27c01509e2293d8905697feee3a157478393683eab3deb46a02f486f70a
>XSIZE (pymc-2.0rc1.tar.gz) = 978218
>4701a20f5e0f2e6342883d84867903f6
>echo x - py-pymc/Makefile
>sed 's/^X//' >py-pymc/Makefile << 'b70d98f3f14233c734202ca4805d7059'
>X# New ports collection makefile for:	py-pymc
>X# Date created:		2008-12-10
>X# Whom:			Wen Heping <wenheping@gmail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	pymc
>XPORTVERSION=	2.0r1
>XCATEGORIES=	math python
>XMASTER_SITES=	CHEESESHOP
>XPKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
>XDISTNAME=	${PORTNAME}-2.0rc1
>X
>XMAINTAINER=	wenheping@gmail.com
>XCOMMENT=	Markov Chain Monte Carlo Sampling Toolkit
>X
>XBUILD_DEPENDS=	${PYNUMPY}
>XRUN_DEPENDS=	${BUILD_DEPENDS}
>X#LIB_DEPENDS=	lapack.4:${PORTSDIR}/math/lapack
>X
>XUSE_PYTHON=	yes
>XUSE_PYDISTUTILS=	yes
>XPYDISTUTILS_EGGINFO=	${DISTNAME}-${PYTHON_VERSION:S/thon//}.egg-info
>X
>X.include <bsd.port.mk>
>b70d98f3f14233c734202ca4805d7059
>exit

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Attachments on bug 129567: 92013