Attachment 97299 Details for Bug 136021 – file.shar

file.shar

file.shar (text/plain), 7.57 KB, created by wenheping on 2009-06-25 08:20:01 UTC

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Filename:

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Creator: wenheping

Created: 2009-06-25 08:20:01 UTC

Size: 7.57 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	p5-Bio-MAGETAB
>#	p5-Bio-MAGETAB/pkg-plist
>#	p5-Bio-MAGETAB/pkg-descr
>#	p5-Bio-MAGETAB/distinfo
>#	p5-Bio-MAGETAB/Makefile
>#
>echo c - p5-Bio-MAGETAB
>mkdir -p p5-Bio-MAGETAB > /dev/null 2>&1
>echo x - p5-Bio-MAGETAB/pkg-plist
>sed 's/^X//' >p5-Bio-MAGETAB/pkg-plist << 'b2d782d6bada6d1197c854636d13ebe8'
>Xbin/deploy_magetab_db.pl
>Xbin/fix_ae_magetab.pl
>Xbin/read_magetab.pl
>Xbin/unload_magetab_namespace.pl
>X%%SITE_PERL%%/mach/auto/Bio/MAGETAB/.packlist
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/DataMatrix.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/TagValueFile.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/Tabfile.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/SDRF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/IDF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/ADF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/ADF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/Tabfile.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/IDF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/SDRF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/GraphViz.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Writer.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Reader.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Builder.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/DBLoader.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/RewriteAE.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Util/Persistence.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Material.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Types.pm
>X%%SITE_PERL%%/Bio/MAGETAB/ControlledTerm.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Contact.pm
>X%%SITE_PERL%%/Bio/MAGETAB/DesignElement.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Investigation.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Comment.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Publication.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Sample.pm
>X%%SITE_PERL%%/Bio/MAGETAB/DataFile.pm
>X%%SITE_PERL%%/Bio/MAGETAB/ArrayDesign.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Event.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Edge.pm
>X%%SITE_PERL%%/Bio/MAGETAB/MatrixColumn.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Normalization.pm
>X%%SITE_PERL%%/Bio/MAGETAB/ParameterValue.pm
>X%%SITE_PERL%%/Bio/MAGETAB/DataAcquisition.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Assay.pm
>X%%SITE_PERL%%/Bio/MAGETAB/SDRFRow.pm
>X%%SITE_PERL%%/Bio/MAGETAB/SDRF.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Data.pm
>X%%SITE_PERL%%/Bio/MAGETAB/MatrixRow.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Extract.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Measurement.pm
>X%%SITE_PERL%%/Bio/MAGETAB/TermSource.pm
>X%%SITE_PERL%%/Bio/MAGETAB/CompositeElement.pm
>X%%SITE_PERL%%/Bio/MAGETAB/BaseClass.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Node.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Protocol.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Reporter.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Factor.pm
>X%%SITE_PERL%%/Bio/MAGETAB/ProtocolApplication.pm
>X%%SITE_PERL%%/Bio/MAGETAB/LabeledExtract.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Feature.pm
>X%%SITE_PERL%%/Bio/MAGETAB/DatabaseEntry.pm
>X%%SITE_PERL%%/Bio/MAGETAB/Source.pm
>X%%SITE_PERL%%/Bio/MAGETAB/ProtocolParameter.pm
>X%%SITE_PERL%%/Bio/MAGETAB/FactorValue.pm
>X%%SITE_PERL%%/Bio/MAGETAB/DataMatrix.pm
>X%%SITE_PERL%%/Bio/MAGETAB.pm
>X@dirrm %%SITE_PERL%%/mach/auto/Bio/MAGETAB
>X@dirrmtry %%SITE_PERL%%/mach/auto/Bio
>X@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Reader
>X@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util/Writer
>X@dirrm %%SITE_PERL%%/Bio/MAGETAB/Util
>X@dirrm %%SITE_PERL%%/Bio/MAGETAB
>X@dirrmtry %%SITE_PERL%%/Bio
>b2d782d6bada6d1197c854636d13ebe8
>echo x - p5-Bio-MAGETAB/pkg-descr
>sed 's/^X//' >p5-Bio-MAGETAB/pkg-descr << 'c003dea7564135556c79263434369fed'
>Xp5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This
>Xis a beta release. All functions have now been implemented and most
>Xhave test suites; the exceptions include the modules involved in
>Xexport of MAGE-TAB documents, which are still a little experimental in
>Xnature. The API is mostly finalised (and fully documented), but some
>Xdetails may yet change where necessary to improve usability.
>X
>XWWW: http://search.cpan.org/dist/Bio-MAGETAB/
>c003dea7564135556c79263434369fed
>echo x - p5-Bio-MAGETAB/distinfo
>sed 's/^X//' >p5-Bio-MAGETAB/distinfo << 'bb94b888cdb17aa849dae9aa20d11712'
>XMD5 (Bio-MAGETAB-0.98.tar.gz) = 91ddd45bdbe836a9be1f09a7049bb98a
>XSHA256 (Bio-MAGETAB-0.98.tar.gz) = 2a8bf1eb1883f9b9afa9c9caf2ebae74345fb3e0e1a1faf891f3790ebb223151
>XSIZE (Bio-MAGETAB-0.98.tar.gz) = 240502
>bb94b888cdb17aa849dae9aa20d11712
>echo x - p5-Bio-MAGETAB/Makefile
>sed 's/^X//' >p5-Bio-MAGETAB/Makefile << '654f1ab6c42a753243f34928ee3d2cd8'
>X# New ports collection makefile for:	p5-Bio-MAGETAB
>X# Date created:				23 June, 2009
>X# Whom:					Wen Heping <wenheping@gmail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	Bio-MAGETAB
>XPORTVERSION=	0.98
>XCATEGORIES=	biology perl5
>XMASTER_SITES=	CPAN
>XPKGNAMEPREFIX=	p5-
>X
>XMAINTAINER=	wenheping@gmail.com
>XCOMMENT=	A data model and utility API for the MAGE-TAB format
>X
>XBUILD_DEPENDS=	p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception \
>X		p5-DateTime-Format-DateManip>=0.04:${PORTSDIR}/devel/p5-DateTime-Format-DateManip \
>X		p5-Moose-Policy>=0.03:${PORTSDIR}/devel/p5-Moose-Policy \
>X		p5-MooseX-Types>=0.10:${PORTSDIR}/devel/p5-MooseX-Types \
>X		p5-Parse-RecDescent>=1.96:${PORTSDIR}/devel/p5-Parse-RecDescent \
>X		p5-Params-Coerce>=0.14:${PORTSDIR}/devel/p5-Params-Coerce \
>X		p5-URI>=1.35:${PORTSDIR}/net/p5-URI \
>X		p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception \
>X		p5-Date-Manip>=5.44:${PORTSDIR}/devel/p5-Date-Manip \
>X		p5-DateTime>=0.43:${PORTSDIR}/devel/p5-DateTime \
>X		p5-Text-CSV_XS>=0.32:${PORTSDIR}/textproc/p5-Text-CSV_XS \
>X		p5-Email-Valid>=0.179:${PORTSDIR}/mail/p5-Email-Valid \
>X		p5-Moose>=0.43:${PORTSDIR}/devel/p5-Moose
>XRUN_DEPENDS=	${BUILD_DEPENDS}
>X
>XPERL_CONFIGURE=	YES
>X
>XMAN3=	Bio::MAGETAB::Material.3 \
>X	Bio::MAGETAB::Types.3 \
>X	Bio::MAGETAB::ControlledTerm.3 \
>X	Bio::MAGETAB::Util::Reader::DataMatrix.3 \
>X	Bio::MAGETAB::DesignElement.3 \
>X	Bio::MAGETAB::Contact.3 \
>X	Bio::MAGETAB::Investigation.3 \
>X	Bio::MAGETAB::Comment.3 \
>X	Bio::MAGETAB::Sample.3 \
>X	Bio::MAGETAB::Publication.3 \
>X	Bio::MAGETAB::DataFile.3 \
>X	Bio::MAGETAB::Event.3 \
>X	Bio::MAGETAB::Edge.3 \
>X	Bio::MAGETAB::ArrayDesign.3 \
>X	Bio::MAGETAB.3 \
>X	Bio::MAGETAB::Util::Writer::ADF.3 \
>X	Bio::MAGETAB::MatrixColumn.3 \
>X	Bio::MAGETAB::Normalization.3 \
>X	Bio::MAGETAB::Util::Reader::TagValueFile.3 \
>X	Bio::MAGETAB::ParameterValue.3 \
>X	Bio::MAGETAB::Util::Reader::Tabfile.3 \
>X	Bio::MAGETAB::Util::Writer.3 \
>X	Bio::MAGETAB::Util::Writer::Tabfile.3 \
>X	Bio::MAGETAB::DataAcquisition.3 \
>X	Bio::MAGETAB::Util::Reader::SDRF.3 \
>X	Bio::MAGETAB::Assay.3 \
>X	Bio::MAGETAB::SDRFRow.3 \
>X	Bio::MAGETAB::Util::Writer::IDF.3 \
>X	Bio::MAGETAB::SDRF.3 \
>X	Bio::MAGETAB::MatrixRow.3 \
>X	Bio::MAGETAB::Data.3 \
>X	Bio::MAGETAB::Util::Reader.3 \
>X	Bio::MAGETAB::Extract.3 \
>X	Bio::MAGETAB::Util::Reader::IDF.3 \
>X	Bio::MAGETAB::TermSource.3 \
>X	Bio::MAGETAB::Measurement.3 \
>X	Bio::MAGETAB::Util::Builder.3 \
>X	Bio::MAGETAB::CompositeElement.3 \
>X	Bio::MAGETAB::Node.3 \
>X	Bio::MAGETAB::Util::DBLoader.3 \
>X	Bio::MAGETAB::BaseClass.3 \
>X	Bio::MAGETAB::Util::Writer::SDRF.3 \
>X	Bio::MAGETAB::Protocol.3 \
>X	Bio::MAGETAB::Reporter.3 \
>X	Bio::MAGETAB::Util::Reader::ADF.3 \
>X	Bio::MAGETAB::Factor.3 \
>X	Bio::MAGETAB::DatabaseEntry.3 \
>X	Bio::MAGETAB::Feature.3 \
>X	Bio::MAGETAB::LabeledExtract.3 \
>X	Bio::MAGETAB::ProtocolApplication.3 \
>X	Bio::MAGETAB::Util::RewriteAE.3 \
>X	Bio::MAGETAB::Source.3 \
>X	Bio::MAGETAB::Util::Persistence.3 \
>X	Bio::MAGETAB::Util::Writer::GraphViz.3 \
>X	Bio::MAGETAB::DataMatrix.3 \
>X	Bio::MAGETAB::FactorValue.3 \
>X	Bio::MAGETAB::ProtocolParameter.3
>X
>Xpost-extract:
>X	@${REINPLACE_CMD} -e 's?auto_install?#auto_install?g' \
>X		${WRKSRC}/Makefile.PL
>X
>X.include <bsd.port.mk>
>654f1ab6c42a753243f34928ee3d2cd8
>exit

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Attachments on bug 136021: 97299