Attachment 98988 Details for Bug 137983 – file.shar

file.shar

file.shar (text/plain), 4.46 KB, created by wenheping on 2009-08-20 01:40:01 UTC

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Creator: wenheping

Created: 2009-08-20 01:40:01 UTC

Size: 4.46 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	p5-Bio-NEXUS
>#	p5-Bio-NEXUS/Makefile
>#	p5-Bio-NEXUS/distinfo
>#	p5-Bio-NEXUS/pkg-descr
>#	p5-Bio-NEXUS/pkg-plist
>#
>echo c - p5-Bio-NEXUS
>mkdir -p p5-Bio-NEXUS > /dev/null 2>&1
>echo x - p5-Bio-NEXUS/Makefile
>sed 's/^X//' >p5-Bio-NEXUS/Makefile << '0fe000fba07281d505e3c57ae6f1b769'
>X# New ports collection makefile for:	Bio-NEXUS
>X# Date created:				20 Sug, 2009
>X# Whom:					Wen Heping <wenheping@gmail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	Bio-NEXUS
>XPORTVERSION=	0.72
>XCATEGORIES=	biology perl5
>XMASTER_SITES=	CPAN
>XPKGNAMEPREFIX=	p5-
>X
>XMAINTAINER=	wenheping@gmail.com
>XCOMMENT=	An object-oriented Perl API for the NEXUS file format
>X
>XBUILD_DEPENDS=	p5-Clone-PP>=1.02:${PORTSDIR}/devel/p5-Clone-PP \
>X		p5-Test-Deep>=0.106:${PORTSDIR}/devel/p5-Test-Deep
>XRUN_DEPENDS=	${BUILD_DEPENDS}
>X
>XPERL_CONFIGURE=	yes
>X
>XMAN1=		nextool.pl.1 nex2text_tree.pl.1 nexplot.pl.1
>XMAN3=		Bio::NEXUS::DataBlock.3 Bio::NEXUS::CodonsBlock.3 \
>X		Bio::NEXUS::NotesBlock.3 Bio::NEXUS::NHXCmd.3 \
>X		Bio::NEXUS::HistoryBlock.3 Bio::NEXUS::TaxUnit.3 \
>X		Bio::NEXUS::CharactersBlock.3 Bio::NEXUS::SpanBlock.3 \
>X		Bio::NEXUS::UnalignedBlock.3 Bio::NEXUS::TaxUnitSet.3 \
>X		Bio::NEXUS::DistancesBlock.3 Bio::NEXUS::UnknownBlock.3 \
>X		Bio::NEXUS::Node.3 Bio::NEXUS::Matrix.3 \
>X		Bio::NEXUS::Tree.3 Bio::NEXUS::WeightSet.3 \
>X		Bio::NEXUS::TreesBlock.3 Bio::NEXUS::Util::Exceptions.3 \
>X		Bio::NEXUS::SetsBlock.3 Bio::NEXUS::TaxaBlock.3 \
>X		Bio::NEXUS::Util::Logger.3 Bio::NEXUS::AssumptionsBlock.3 \
>X		Bio::NEXUS::Block.3 Bio::NEXUS::Functions.3 \
>X		Bio::NEXUS.3
>X
>X.include <bsd.port.mk>
>0fe000fba07281d505e3c57ae6f1b769
>echo x - p5-Bio-NEXUS/distinfo
>sed 's/^X//' >p5-Bio-NEXUS/distinfo << '6208db6bcdd56891147b337c53cca39a'
>XMD5 (Bio-NEXUS-0.72.tar.gz) = 2dc7506f6d9fa9bea615f0855b8ff2dd
>XSHA256 (Bio-NEXUS-0.72.tar.gz) = 645203f64b61df3d403108dd4b9057c492e67dfa46ecd1c280980b3e58a1fb40
>XSIZE (Bio-NEXUS-0.72.tar.gz) = 946520
>6208db6bcdd56891147b337c53cca39a
>echo x - p5-Bio-NEXUS/pkg-descr
>sed 's/^X//' >p5-Bio-NEXUS/pkg-descr << '83ede60d9d092a913a55611b060233fd'
>XBio::NEXUS package provides an object-oriented, Perl-based
>Xapplications programming interface (API) to the NEXUS file
>Xformat of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
>XNEXUS is a powerful and extensible format designed for use
>Xin evolutionary analysis, including the analysis of molecular
>Xsequence data as well as classical morphological and life-history
>Xdata. NEXUS is the input or output format for software such as
>XPAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
>Xso on.  This package also contains the demonstration applications
>Xnexplot.pl (plot character data with a tree) and nextool.pl
>X(allowing programmatic editing, e.g., selecting particular
>Xclades or subsets of data). 
>X
>XWWW: http://search.cpan.org/dist/Bio-NEXUS/
>83ede60d9d092a913a55611b060233fd
>echo x - p5-Bio-NEXUS/pkg-plist
>sed 's/^X//' >p5-Bio-NEXUS/pkg-plist << '177f6c0a732b5019548100eba750e60e'
>Xbin/nex2text_tree.pl
>Xbin/nexplot.pl
>Xbin/nextool.pl
>X%%SITE_PERL%%/Bio/NEXUS.pm
>X%%SITE_PERL%%/Bio/NEXUS/DataBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/._Functions.pm
>X%%SITE_PERL%%/Bio/NEXUS/CodonsBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/NotesBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/NHXCmd.pm
>X%%SITE_PERL%%/Bio/NEXUS/HistoryBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/TaxUnit.pm
>X%%SITE_PERL%%/Bio/NEXUS/CharactersBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/SpanBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/UnalignedBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/TaxUnitSet.pm
>X%%SITE_PERL%%/Bio/NEXUS/DistancesBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/UnknownBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/Node.pm
>X%%SITE_PERL%%/Bio/NEXUS/Matrix.pm
>X%%SITE_PERL%%/Bio/NEXUS/Tree.pm
>X%%SITE_PERL%%/Bio/NEXUS/WeightSet.pm
>X%%SITE_PERL%%/Bio/NEXUS/SetsBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/TaxaBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/TreesBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/AssumptionsBlock.pm
>X%%SITE_PERL%%/Bio/NEXUS/Block.pm
>X%%SITE_PERL%%/Bio/NEXUS/Functions.pm
>X%%SITE_PERL%%/Bio/NEXUS/Util/Exceptions.pm
>X%%SITE_PERL%%/Bio/NEXUS/Util/Logger.pm
>X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS/.packlist
>X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
>X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
>X@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Util
>X@dirrmtry %%SITE_PERL%%/Bio/NEXUS
>X@dirrmtry %%SITE_PERL%%/Bio
>177f6c0a732b5019548100eba750e60e
>exit

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Attachments on bug 137983: 98988