Attachment 99206 Details for Bug 138254 – file.shar

file.shar

file.shar (text/plain), 3.67 KB, created by wenheping on 2009-08-28 08:30:34 UTC

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Creator: wenheping

Created: 2009-08-28 08:30:34 UTC

Size: 3.67 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	iolib
>#	iolib/Makefile
>#	iolib/distinfo
>#	iolib/pkg-descr
>#	iolib/pkg-plist
>#
>echo c - iolib
>mkdir -p iolib > /dev/null 2>&1
>echo x - iolib/Makefile
>sed 's/^X//' >iolib/Makefile << 'b7ad3746b47ea4d30cc028e26598a798'
>X# New ports collection makefile for:	io_lib
>X# Date created:				27 Aug, 2009
>X# Whom:					Wen Heping <wenheping@gmail.com>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	io_lib
>XPORTVERSION=	1.12.1
>XCATEGORIES=	biology
>XMASTER_SITES=	SF
>XMASTER_SITE_SUBDIR=	staden/${PORTNAME}/${PORTVERSION}
>X
>XMAINTAINER=	wenheping@gmail.com
>XCOMMENT=	A general purpose trace file(and Experiment File) reading interface
>X
>XUSE_AUTOTOOLS=	libtool:22:env
>XGNU_CONFIGURE=	yes
>XUSE_GMAKE=	yes
>XUSE_LDCONFIG=	yes
>X
>XMAN1=	srf_index_hash.1 srf_info.1 srf_list.1 illumina2srf.1 \
>X	srf2fasta.1 srf2fastq.1
>XMAN3=	read_scf_header.3 read_allocate.3 ExperimentFile.3 \
>X	write_reading.3 write_scf.3 read_deallocate.3 \
>X	fwrite_reading.3 read2scf.3 scf2read.3 \
>X	fwrite_scf.3 write_scf_header.3 read_reading.3 \
>X	read_scf.3 exp2read.3 fread_reading.3 \
>X	read2exp.3 fread_scf.3
>XMAN4=	Read.4
>X
>X.include <bsd.port.mk>
>b7ad3746b47ea4d30cc028e26598a798
>echo x - iolib/distinfo
>sed 's/^X//' >iolib/distinfo << '6ece5bfd27be348ff9fef9c9bb26bcaf'
>XMD5 (io_lib-1.12.1.tar.gz) = f511698b766d5bd7d15a8269bdcddf84
>XSHA256 (io_lib-1.12.1.tar.gz) = 732fc729662f380861e12fd9006a1a1c072f459589b6d2c49a7c01c88a9cdf01
>XSIZE (io_lib-1.12.1.tar.gz) = 772314
>6ece5bfd27be348ff9fef9c9bb26bcaf
>echo x - iolib/pkg-descr
>sed 's/^X//' >iolib/pkg-descr << 'c04402d888d8b1769b87fa52eff5c855'
>XIo_lib is a library of file reading and writing code to provide a
>Xgeneral purpose trace file (and Experiment File) reading interface.
>XThe programmer simply calls the (eg) read_reading to create a "Read"
>XC structure with the data loaded into memory. It has been compiled
>Xand tested on a variety of unix systems, MacOS X and MS Windows.
>X
>XWWW:	http://staden.sourceforge.net/
>c04402d888d8b1769b87fa52eff5c855
>echo x - iolib/pkg-plist
>sed 's/^X//' >iolib/pkg-plist << '0298aa480c8dd33592e6b51a7423979d'
>Xinclude/io_lib/Read.h
>Xinclude/io_lib/abi.h
>Xinclude/io_lib/alf.h
>Xinclude/io_lib/array.h
>Xinclude/io_lib/compress.h
>Xinclude/io_lib/compression.h
>Xinclude/io_lib/deflate_interlaced.h
>Xinclude/io_lib/error.h
>Xinclude/io_lib/expFileIO.h
>Xinclude/io_lib/fpoint.h
>Xinclude/io_lib/hash_table.h
>Xinclude/io_lib/io_lib_config.h
>Xinclude/io_lib/jenkins_lookup3.h
>Xinclude/io_lib/mFILE.h
>Xinclude/io_lib/mach-io.h
>Xinclude/io_lib/misc.h
>Xinclude/io_lib/open_trace_file.h
>Xinclude/io_lib/os.h
>Xinclude/io_lib/plain.h
>Xinclude/io_lib/scf.h
>Xinclude/io_lib/scf_extras.h
>Xinclude/io_lib/seqIOABI.h
>Xinclude/io_lib/seqIOCTF.h
>Xinclude/io_lib/sff.h
>Xinclude/io_lib/srf.h
>Xinclude/io_lib/stdio_hack.h
>Xinclude/io_lib/tar_format.h
>Xinclude/io_lib/traceType.h
>Xinclude/io_lib/translate.h
>Xinclude/io_lib/vlen.h
>Xinclude/io_lib/xalloc.h
>Xinclude/io_lib/ztr.h
>Xbin/append_sff
>Xbin/convert_trace
>Xbin/extract_fastq
>Xbin/extract_qual
>Xbin/extract_seq
>Xbin/get_comment
>Xbin/hash_extract
>Xbin/hash_list
>Xbin/hash_sff
>Xbin/hash_tar
>Xbin/index_tar
>Xbin/io_lib-config
>Xbin/makeSCF
>Xbin/scf_dump
>Xbin/scf_info
>Xbin/scf_update
>Xbin/srf2fasta
>Xbin/srf2fastq
>Xbin/srf_dump_all
>Xbin/srf_extract_hash
>Xbin/srf_extract_linear
>Xbin/srf_filter
>Xbin/srf_index_hash
>Xbin/srf_info
>Xbin/srf_list
>Xbin/trace_dump
>Xbin/ztr_dump
>Xlib/libstaden-read.a
>Xlib/libstaden-read.la
>Xlib/libstaden-read.so
>Xlib/libstaden-read.so.1
>X@dirrm include/io_lib
>0298aa480c8dd33592e6b51a7423979d
>exit

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Attachments on bug 138254: 99206