Attachment 102405 Details for Bug 142187 – hs-bio.shar

hs-bio.shar

hs-bio.shar (text/plain), 7.06 KB, created by Jacula Modyun on 2009-12-30 22:20:05 UTC

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Creator: Jacula Modyun

Created: 2009-12-30 22:20:05 UTC

Size: 7.06 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	hs-bio
>#	hs-bio/Makefile
>#	hs-bio/distinfo
>#	hs-bio/pkg-plist
>#	hs-bio/pkg-descr
>#
>echo c - hs-bio
>mkdir -p hs-bio > /dev/null 2>&1
>echo x - hs-bio/Makefile
>sed 's/^X//' >hs-bio/Makefile << '8b1308d27c786271a80790f4d5abed5c'
>X# New ports collection makefile for: hs-bio
>X# Date created:        December 20 2009
>X# Whom:                Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
>X#
>X
>XPORTNAME=	bio
>XPORTVERSION=	0.4
>XCATEGORIES=	science haskell
>XMASTER_SITES=	http://hackage.haskell.org/packages/archive/${PORTNAME}/${PORTVERSION}/
>XPKGNAMEPREFIX=	hs-
>X
>XMAINTAINER=	jacula@gmail.com
>XCOMMENT=	A bioinformatics library
>X
>XBUILD_DEPENDS+=	ghc:${PORTSDIR}/lang/ghc \
>X		hs-tagsoup>=0.4:${PORTSDIR}/textproc/hs-tagsoup \
>X		hs-binary-ghc>=0.5.0.2:${PORTSDIR}/devel/hs-binary-ghc
>XRUN_DEPENDS+=	ghc:${PORTSDIR}/lang/ghc \
>X		hs-tagsoup>=0.4:${PORTSDIR}/textproc/hs-tagsoup \
>X		hs-binary-ghc>=0.5.0.2:${PORTSDIR}/devel/hs-binary-ghc
>X
>XGHC_VERSION=	6.10.4
>XBIO_VERSION=	${PORTVERSION}
>X
>XGHC_CMD=	${LOCALBASE}/bin/ghc
>XSETUP_CMD=	./setup
>X
>XDATADIR=	${PREFIX}/share/${DISTNAME}
>XDOCSDIR=	${PREFIX}/share/doc/${DISTNAME}
>XBIO_LIBDIR_REL=	lib/${DISTNAME}
>X
>XPLIST_SUB=	GHC_VERSION=${GHC_VERSION} \
>X		BIO_VERSION=${BIO_VERSION} \
>X		BIO_LIBDIR_REL=${BIO_LIBDIR_REL}
>X
>X.if defined(NOPORTDOCS)
>XPLIST_SUB+=	NOPORTDOCS=""
>X.else
>XPLIST_SUB+=	NOPORTDOCS="@comment "
>X.endif
>X
>X.if !defined(NOPORTDOCS)
>X
>XPORT_HADDOCK!=	(cd  ${.CURDIR}/../../lang/ghc && ${MAKE} -V PORT_HADDOCK)
>X.if !empty(PORT_HADDOCK:M?0)
>XBUILD_DEPENDS+=	haddock:${PORTSDIR}/devel/hs-haddock
>X.endif
>XBUILD_DEPENDS+=	HsColour:${PORTSDIR}/print/hs-hscolour
>X
>XHSCOLOUR_VERSION=	1.15
>XHSCOLOUR_DATADIR=	${PREFIX}/share/hscolour-${HSCOLOUR_VERSION}
>X
>XPORTDOCS=	*
>X.endif
>X
>X.SILENT:
>X
>Xdo-configure:
>X	cd ${WRKSRC} && ${GHC_CMD} --make Setup.hs -o setup -package Cabal \
>X		     && ${SETUP_CMD} configure --haddock-options=-w --prefix=${PREFIX}
>X
>Xdo-build:
>X	cd ${WRKSRC} && ${SETUP_CMD} build \
>X		     && ${SETUP_CMD} register --gen-script
>X
>X.if !defined(NOPORTDOCS)
>X	cd ${WRKSRC} && ${SETUP_CMD} haddock --hyperlink-source \
>X					     --hscolour-css=${HSCOLOUR_DATADIR}/hscolour.css
>X.endif
>X
>Xdo-install:
>X	cd ${WRKSRC} && ${SETUP_CMD} install \
>X		     && ${INSTALL_SCRIPT} register.sh ${PREFIX}/${BIO_LIBDIR_REL}/register.sh
>X
>Xpost-install:
>X	${RM} -f ${PREFIX}/lib/ghc-${GHC_VERSION}/package.conf.old
>X
>X.include <bsd.port.mk>
>8b1308d27c786271a80790f4d5abed5c
>echo x - hs-bio/distinfo
>sed 's/^X//' >hs-bio/distinfo << 'b2941416e0c3d93fa96f8db1a4930bcc'
>XMD5 (bio-0.4.tar.gz) = 339b6d5a14a04a4049c99e08892d8d25
>XSHA256 (bio-0.4.tar.gz) = fb53411637cab2150880e6ea0319984e5e45ee90275fc2dd629cb86fc4f048d9
>XSIZE (bio-0.4.tar.gz) = 79415
>b2941416e0c3d93fa96f8db1a4930bcc
>echo x - hs-bio/pkg-plist
>sed 's/^X//' >hs-bio/pkg-plist << '358d7e778a0563ca7dc36415792a24e6'
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/AAlign.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/ACE.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/AlignData.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/Blast.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/BlastData.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/BlastFlat.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/BlastXML.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/Bowtie.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/Matrices.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/Multiple.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/QAlign.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/SAlign.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment/Soap.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Clustering.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3/Escape.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3/Feature.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3/FeatureHier.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3/FeatureHierSequences.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3/SGD.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/ContigLocation.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/LocMap.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/Location.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/OnSeq.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/Position.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/SeqLocMap.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/SeqLocation.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location/Strand.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/Entropy.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/FastQ.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/Fasta.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/GOA.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/GeneOntology.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/HashWord.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/KEGG.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/Phd.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/SFF.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/SFF_name.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/SeqData.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence/TwoBit.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Util.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Util/Parsex.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Util/TestBase.hi
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/HSbio-%%BIO_VERSION%%.o
>X%%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/libHSbio-%%BIO_VERSION%%.a
>X%%BIO_LIBDIR_REL%%/register.sh
>X%%DATADIR%%/README
>X%%NOPORTDOCS%%%%DOCSDIR%%/LICENSE
>X%%NOPORTDOCS%%@dirrmtry %%DOCSDIR%%
>X@dirrmtry %%DATADIR%%
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Util
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Sequence
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Location
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/GFF3
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio/Alignment
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%/Bio
>X@dirrm %%BIO_LIBDIR_REL%%/ghc-%%GHC_VERSION%%
>X@dirrm %%BIO_LIBDIR_REL%%
>X@exec /bin/sh %D/%%BIO_LIBDIR_REL%%/register.sh
>X@exec /bin/rm -f %D/lib/ghc-%%GHC_VERSION%%/package.conf.old
>X@unexec %D/bin/ghc-pkg unregister bio
>X@unexec /bin/rm -f %D/lib/ghc-%%GHC_VERSION%%/package.conf.old
>358d7e778a0563ca7dc36415792a24e6
>echo x - hs-bio/pkg-descr
>sed 's/^X//' >hs-bio/pkg-descr << '26a1d196401d90421a7705c6901ef42b'
>XThis is a collection of data structures and algorithms useful for
>Xbuilding bioinformatics-related tools and utilities.
>XCurrent list of features includes: a Sequence data type supporting
>Xprotein and nucleotide sequences and conversion between them.
>X
>XWWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/
>26a1d196401d90421a7705c6901ef42b
>exit

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Attachments on bug 142187: 102405