View | Details | Raw Unified | Return to bug 142409
Collapse All | Expand All

(-)Makefile (-1 / +2 lines)
Lines 17-22 Link Here
17
WRKTOP=		${WRKDIR}/${DISTNAME}
17
WRKTOP=		${WRKDIR}/${DISTNAME}
18
WRKSRC=		${WRKTOP}/src
18
WRKSRC=		${WRKTOP}/src
19
MAKEFILE=	makefile
19
MAKEFILE=	makefile
20
SUB_FILES=	pkg-message
20
21
21
#
22
#
22
# Actually want an 'ALL_TARGET = all perl' which then requires
23
# Actually want an 'ALL_TARGET = all perl' which then requires
Lines 90-95 Link Here
90
.endif
91
.endif
91
92
92
post-install:
93
post-install:
93
	@${SED} -E -e 's#PREFIX#${PREFIX}#' -e '/(^\[|]$$)/d' ${PKGMESSAGE}
94
	@${CAT} ${PKGMESSAGE}
94
95
95
.include <bsd.port.mk>
96
.include <bsd.port.mk>
(-)pkg-message (-15 lines)
Removed Link Here
1
Welcome to Wise2.2
2
3
You must set your WISECONFIGDIR to the config directory before
4
using the programs:
5
6
in (t)csh:  setenv WISECONFIGDIR PREFIX/share/wise/
7
in (ba)sh:  export WISECONFIGDIR=PREFIX/share/wise/
8
9
To try an example:
10
11
cd PREFIX/share/examples/wise
12
genewise road.pep human.genomic
13
14
[Replace 'PREFIX' above with the actual installation prefix,
15
which by default is '/usr/local'.]
(-)pkg-plist (-40 / +40 lines)
Lines 10-53 Link Here
10
%%PORTDOCS%%%%DOCSDIR%%/wise2.tex
10
%%PORTDOCS%%%%DOCSDIR%%/wise2.tex
11
%%PORTDOCS%%%%DOCSDIR%%/wise2api.tex
11
%%PORTDOCS%%%%DOCSDIR%%/wise2api.tex
12
%%PORTDOCS%%%%DOCSDIR%%/wise3arch.tex
12
%%PORTDOCS%%%%DOCSDIR%%/wise3arch.tex
13
%%PORTDOCS%%share/examples/wise/README
13
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README
14
%%PORTDOCS%%share/examples/wise/db.hmm
14
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db.hmm
15
%%PORTDOCS%%share/examples/wise/hn_est.fa
15
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hn_est.fa
16
%%PORTDOCS%%share/examples/wise/human.genomic
16
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/human.genomic
17
%%PORTDOCS%%share/examples/wise/keratin_intron.human
17
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.human
18
%%PORTDOCS%%share/examples/wise/keratin_intron.mouse
18
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.mouse
19
%%PORTDOCS%%share/examples/wise/pep.fa
19
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pep.fa
20
%%PORTDOCS%%share/examples/wise/road.pep
20
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/road.pep
21
%%PORTDOCS%%share/examples/wise/rrm.HMM
21
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/rrm.HMM
22
%%PORTDOCS%%share/examples/wise/vav.dna
22
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vav.dna
23
%%PORTDOCS%%share/examples/wise/xeno.cdna
23
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.cdna
24
%%PORTDOCS%%share/examples/wise/xeno.pep
24
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.pep
25
share/wise/BLOSUM30.bla
25
%%DATADIR%%/BLOSUM30.bla
26
share/wise/BLOSUM45.bla
26
%%DATADIR%%/BLOSUM45.bla
27
share/wise/BLOSUM62.bla
27
%%DATADIR%%/BLOSUM62.bla
28
share/wise/BLOSUM80.bla
28
%%DATADIR%%/BLOSUM80.bla
29
share/wise/aa.rnd
29
%%DATADIR%%/aa.rnd
30
share/wise/blosum30.bla
30
%%DATADIR%%/blosum30.bla
31
share/wise/blosum62.bla
31
%%DATADIR%%/blosum62.bla
32
share/wise/cb.tmf
32
%%DATADIR%%/cb.tmf
33
share/wise/codon.table
33
%%DATADIR%%/codon.table
34
share/wise/gene.stat
34
%%DATADIR%%/gene.stat
35
share/wise/gon120.bla
35
%%DATADIR%%/gon120.bla
36
share/wise/gon160.bla
36
%%DATADIR%%/gon160.bla
37
share/wise/gon200.bla
37
%%DATADIR%%/gon200.bla
38
share/wise/gon250.bla
38
%%DATADIR%%/gon250.bla
39
share/wise/gon350.bla
39
%%DATADIR%%/gon350.bla
40
share/wise/human.gf
40
%%DATADIR%%/human.gf
41
share/wise/human.gp
41
%%DATADIR%%/human.gp
42
share/wise/human.stats
42
%%DATADIR%%/human.stats
43
share/wise/idenity.bla
43
%%DATADIR%%/idenity.bla
44
share/wise/methods
44
%%DATADIR%%/methods
45
share/wise/pb.gf
45
%%DATADIR%%/pb.gf
46
share/wise/pombe.gf
46
%%DATADIR%%/pombe.gf
47
share/wise/tm.pri
47
%%DATADIR%%/tm.pri
48
share/wise/wise.2
48
%%DATADIR%%/wise.2
49
share/wise/wise.per
49
%%DATADIR%%/wise.per
50
share/wise/worm.gf
50
%%DATADIR%%/worm.gf
51
bin/dba
51
bin/dba
52
bin/dnal
52
bin/dnal
53
bin/estwise
53
bin/estwise
Lines 57-61 Link Here
57
bin/psw
57
bin/psw
58
bin/pswdb
58
bin/pswdb
59
%%PORTDOCS%%@dirrm %%DOCSDIR%%
59
%%PORTDOCS%%@dirrm %%DOCSDIR%%
60
%%PORTDOCS%%@dirrm share/examples/wise
60
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
61
@dirrm share/wise
61
%%PORTDATA%%@dirrm %%DATADIR%%
(-)files/pkg-message.in (+12 lines)
Added Link Here
1
Welcome to Wise2.2
2
3
You must set your WISECONFIGDIR to the config directory before
4
using the programs:
5
6
in (t)csh:  setenv WISECONFIGDIR %%PREFIX%%/share/wise/
7
in (ba)sh:  export WISECONFIGDIR=%%PREFIX%%/share/wise/
8
9
To try an example:
10
11
cd %%PREFIX%%/share/examples/wise
12
genewise road.pep human.genomic

Return to bug 142409