Index: Makefile =================================================================== RCS file: /home/ncvs/ports/biology/wise/Makefile,v --- Makefile 26 Dec 2006 12:46:33 -0000 1.8 +++ Makefile 7 Jan 2010 05:50:14 -0000 @@ -17,6 +17,7 @@ WRKTOP= ${WRKDIR}/${DISTNAME} WRKSRC= ${WRKTOP}/src MAKEFILE= makefile +SUB_FILES= pkg-message # # Actually want an 'ALL_TARGET = all perl' which then requires @@ -90,6 +91,6 @@ .endif post-install: - @${SED} -E -e 's#PREFIX#${PREFIX}#' -e '/(^\[|]$$)/d' ${PKGMESSAGE} + @${CAT} ${PKGMESSAGE} .include Index: pkg-message =================================================================== RCS file: pkg-message --- pkg-message 10 Sep 2002 13:58:40 -0000 1.1 +++ /dev/null 1 Jan 1970 00:00:00 -0000 @@ -1,15 +0,0 @@ -Welcome to Wise2.2 - -You must set your WISECONFIGDIR to the config directory before -using the programs: - -in (t)csh: setenv WISECONFIGDIR PREFIX/share/wise/ -in (ba)sh: export WISECONFIGDIR=PREFIX/share/wise/ - -To try an example: - -cd PREFIX/share/examples/wise -genewise road.pep human.genomic - -[Replace 'PREFIX' above with the actual installation prefix, -which by default is '/usr/local'.] Index: pkg-plist =================================================================== RCS file: /home/ncvs/ports/biology/wise/pkg-plist,v --- pkg-plist 22 Oct 2003 09:29:54 -0000 1.3 +++ pkg-plist 7 Jan 2010 05:50:14 -0000 @@ -10,44 +10,44 @@ %%PORTDOCS%%%%DOCSDIR%%/wise2.tex %%PORTDOCS%%%%DOCSDIR%%/wise2api.tex %%PORTDOCS%%%%DOCSDIR%%/wise3arch.tex -%%PORTDOCS%%share/examples/wise/README -%%PORTDOCS%%share/examples/wise/db.hmm -%%PORTDOCS%%share/examples/wise/hn_est.fa -%%PORTDOCS%%share/examples/wise/human.genomic -%%PORTDOCS%%share/examples/wise/keratin_intron.human -%%PORTDOCS%%share/examples/wise/keratin_intron.mouse -%%PORTDOCS%%share/examples/wise/pep.fa -%%PORTDOCS%%share/examples/wise/road.pep -%%PORTDOCS%%share/examples/wise/rrm.HMM -%%PORTDOCS%%share/examples/wise/vav.dna -%%PORTDOCS%%share/examples/wise/xeno.cdna -%%PORTDOCS%%share/examples/wise/xeno.pep -share/wise/BLOSUM30.bla -share/wise/BLOSUM45.bla -share/wise/BLOSUM62.bla -share/wise/BLOSUM80.bla -share/wise/aa.rnd -share/wise/blosum30.bla -share/wise/blosum62.bla -share/wise/cb.tmf -share/wise/codon.table -share/wise/gene.stat -share/wise/gon120.bla -share/wise/gon160.bla -share/wise/gon200.bla -share/wise/gon250.bla -share/wise/gon350.bla -share/wise/human.gf -share/wise/human.gp -share/wise/human.stats -share/wise/idenity.bla -share/wise/methods -share/wise/pb.gf -share/wise/pombe.gf -share/wise/tm.pri -share/wise/wise.2 -share/wise/wise.per -share/wise/worm.gf +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db.hmm +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hn_est.fa +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/human.genomic +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.human +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.mouse +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pep.fa +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/road.pep +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/rrm.HMM +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vav.dna +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.cdna +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.pep +%%DATADIR%%/BLOSUM30.bla +%%DATADIR%%/BLOSUM45.bla +%%DATADIR%%/BLOSUM62.bla +%%DATADIR%%/BLOSUM80.bla +%%DATADIR%%/aa.rnd +%%DATADIR%%/blosum30.bla +%%DATADIR%%/blosum62.bla +%%DATADIR%%/cb.tmf +%%DATADIR%%/codon.table +%%DATADIR%%/gene.stat +%%DATADIR%%/gon120.bla +%%DATADIR%%/gon160.bla +%%DATADIR%%/gon200.bla +%%DATADIR%%/gon250.bla +%%DATADIR%%/gon350.bla +%%DATADIR%%/human.gf +%%DATADIR%%/human.gp +%%DATADIR%%/human.stats +%%DATADIR%%/idenity.bla +%%DATADIR%%/methods +%%DATADIR%%/pb.gf +%%DATADIR%%/pombe.gf +%%DATADIR%%/tm.pri +%%DATADIR%%/wise.2 +%%DATADIR%%/wise.per +%%DATADIR%%/worm.gf bin/dba bin/dnal bin/estwise @@ -57,5 +57,5 @@ bin/psw bin/pswdb %%PORTDOCS%%@dirrm %%DOCSDIR%% -%%PORTDOCS%%@dirrm share/examples/wise -@dirrm share/wise +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% +%%PORTDATA%%@dirrm %%DATADIR%% Index: files/pkg-message.in =================================================================== RCS file: files/pkg-message.in --- /dev/null 1 Jan 1970 00:00:00 -0000 +++ files/pkg-message.in 7 Jan 2010 05:50:14 -0000 @@ -0,0 +1,12 @@ +Welcome to Wise2.2 + +You must set your WISECONFIGDIR to the config directory before +using the programs: + +in (t)csh: setenv WISECONFIGDIR %%PREFIX%%/share/wise/ +in (ba)sh: export WISECONFIGDIR=%%PREFIX%%/share/wise/ + +To try an example: + +cd %%PREFIX%%/share/examples/wise +genewise road.pep human.genomic