# This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # amide # amide/pkg-plist # amide/files # amide/files/patch-src-dcmtk_interface.cc # amide/files/patch-src-mpeg_encode.c # amide/files/patch-configure # amide/files/patch-src-ui_common.c # amide/distinfo # amide/Makefile # amide/pkg-descr # echo c - amide mkdir -p amide > /dev/null 2>&1 echo x - amide/pkg-plist sed 's/^X//' >amide/pkg-plist << '78fb43cec2a4789dedc6b9c63d8d0ee4' Xbin/amide Xshare/applications/amide.desktop Xshare/gnome/help/amide/C/amide.xml Xshare/gnome/help/amide/C/figures/amide_main_window.png Xshare/gnome/help/amide/C/figures/study_tree.png Xshare/gnome/help/amide/C/legal.xml Xshare/gnome/help/amide/es/amide.xml Xshare/gnome/help/amide/es/figures/amide_main_window.png Xshare/gnome/help/amide/es/figures/study_tree.png Xshare/gnome/help/amide/es/legal.xml Xshare/gtk-doc/html/amitk/AmitkWidgets.html Xshare/gtk-doc/html/amitk/SpaceObjects.html Xshare/gtk-doc/html/amitk/amitk-AmitkCanvas.html Xshare/gtk-doc/html/amitk/amitk-AmitkColorTableMenu.html Xshare/gtk-doc/html/amitk/amitk-AmitkDataSet.html Xshare/gtk-doc/html/amitk/amitk-AmitkFiducialMark.html Xshare/gtk-doc/html/amitk/amitk-AmitkLineProfile.html Xshare/gtk-doc/html/amitk/amitk-AmitkObject.html Xshare/gtk-doc/html/amitk/amitk-AmitkObjectDialog.html Xshare/gtk-doc/html/amitk/amitk-AmitkProgressDialog.html Xshare/gtk-doc/html/amitk/amitk-AmitkRawData.html Xshare/gtk-doc/html/amitk/amitk-AmitkRoi.html Xshare/gtk-doc/html/amitk/amitk-AmitkSpace.html Xshare/gtk-doc/html/amitk/amitk-AmitkSpaceEdit.html Xshare/gtk-doc/html/amitk/amitk-AmitkStudy.html Xshare/gtk-doc/html/amitk/amitk-AmitkThresholdsDialog.html Xshare/gtk-doc/html/amitk/amitk-AmitkTreeView.html Xshare/gtk-doc/html/amitk/amitk-AmitkVolume.html Xshare/gtk-doc/html/amitk/amitk-amitk-canvas-object.html Xshare/gtk-doc/html/amitk/amitk-amitk-color-table.html Xshare/gtk-doc/html/amitk/amitk-amitk-common.html Xshare/gtk-doc/html/amitk/amitk-amitk-filter.html Xshare/gtk-doc/html/amitk/amitk-amitk-point.html Xshare/gtk-doc/html/amitk/amitk-amitk-type.html Xshare/gtk-doc/html/amitk/amitk-theory.html Xshare/gtk-doc/html/amitk/amitk.devhelp Xshare/gtk-doc/html/amitk/amitk.devhelp2 Xshare/gtk-doc/html/amitk/amitk_base.html Xshare/gtk-doc/html/amitk/amitk_intro.html Xshare/gtk-doc/html/amitk/amitk_objects.html Xshare/gtk-doc/html/amitk/ch01.html Xshare/gtk-doc/html/amitk/home.png Xshare/gtk-doc/html/amitk/index.html Xshare/gtk-doc/html/amitk/index.sgml Xshare/gtk-doc/html/amitk/left.png Xshare/gtk-doc/html/amitk/right.png Xshare/gtk-doc/html/amitk/style.css Xshare/gtk-doc/html/amitk/up.png X%%NLS%%share/locale/zh_CN/LC_MESSAGES/amide.mo Xshare/omf/amide/amide-C.omf Xshare/omf/amide/amide-es.omf Xshare/pixmaps/amide_logo.png Xshare/pixmaps/amide_file_logo.png X@dirrm share/gtk-doc/html/amitk X@dirrm share/gnome/help/amide/es/figures X@dirrm share/gnome/help/amide/es X@dirrm share/gnome/help/amide/C/figures X@dirrm share/gnome/help/amide/C X@dirrm share/gnome/help/amide X@dirrm share/omf/amide 78fb43cec2a4789dedc6b9c63d8d0ee4 echo c - amide/files mkdir -p amide/files > /dev/null 2>&1 echo x - amide/files/patch-src-dcmtk_interface.cc sed 's/^X//' >amide/files/patch-src-dcmtk_interface.cc << 'cc1f306257c8a737c71ba908e7afb0a1' X--- src/dcmtk_interface.cc.orig 2009-12-14 05:53:11.000000000 +0100 X+++ src/dcmtk_interface.cc 2011-02-11 10:59:18.612565854 +0100 X@@ -32,7 +32,7 @@ X #include X #endif X #include "dcmtk_interface.h" X-#include "dcddirif.h" /* for class DicomDirInterface */ X+#include "dcmtk/dcmdata/dcddirif.h" /* for class DicomDirInterface */ X #include X #include X #include "amitk_data_set_DOUBLE_0D_SCALING.h" X@@ -44,7 +44,8 @@ X #undef PACKAGE_STRING X #undef PACKAGE_TARNAME X #undef PACKAGE_VERSION X-#include X+#include "amide_config.h" X+#include X //#include X const gchar * dcmtk_version = OFFIS_DCMTK_VERSION; X X@@ -188,7 +189,7 @@ X } X dim.y = return_uint16; X X- if (dcm_dataset->findAndGetUint16(DCM_Planes, return_uint16).bad()) X+ if (dcm_dataset->findAndGetUint16(DCM_RETIRED_Planes, return_uint16).bad()) X dim.z = 1; X else X dim.z = return_uint16; X@@ -352,7 +353,7 @@ X if (dcm_dataset->findAndGetString(DCM_PatientID, return_str, OFTrue).good()) X amitk_data_set_set_subject_id(ds, return_str); X X- if (dcm_dataset->findAndGetFloat64(DCM_PatientsWeight, return_float64).good()) { X+ if (dcm_dataset->findAndGetFloat64(DCM_PatientWeight, return_float64).good()) { X amitk_data_set_set_subject_weight(ds, return_float64); X amitk_data_set_set_displayed_weight_unit(ds, AMITK_WEIGHT_UNIT_KILOGRAM); X } X@@ -429,7 +430,7 @@ X } X } X X- if (dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue).good()) { X+ if (dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue).good()) { X if (AMITK_OBJECT_NAME(ds) == NULL) X amitk_object_set_name(AMITK_OBJECT(ds), return_str); X amitk_data_set_set_subject_name(ds, return_str); X@@ -495,7 +496,7 @@ X } X } X X- if (dcm_dataset->findAndGetString(DCM_PatientsBirthDate, return_str, OFTrue).good()) X+ if (dcm_dataset->findAndGetString(DCM_PatientBirthDate, return_str, OFTrue).good()) X amitk_data_set_set_subject_dob(ds, return_str); X X /* because of how the dicom coordinates are setup, after reading in the patient slices, X@@ -1257,7 +1258,7 @@ X if (return_str != NULL) X info->patient_id = g_strdup(return_str); X X- dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue); X+ dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue); X if (return_str != NULL) X info->patient_name = g_strdup(return_str); X X@@ -1537,7 +1538,7 @@ X X /* go through the whole directory */ X while ((patient_record = dcm_root_record->nextSub(patient_record)) != NULL) { X- patient_record->findAndGetString(DCM_PatientsName, record_name[0]); X+ patient_record->findAndGetString(DCM_PatientName, record_name[0]); X patient_record->findAndGetString(DCM_PatientID, patient_id, OFTrue); X X X@@ -1802,8 +1803,9 @@ X } X X #ifdef AMIDE_DEBUG X- dcm_dir.enableVerboseMode(TRUE); X- dcm_dir.setLogStream(&ofConsole); X+// These are not defined in the latest dcmtk and could not find substitutes. X+// dcm_dir.enableVerboseMode(TRUE); X+// dcm_dir.setLogStream(&ofConsole); X #endif X X /* create the DICOMDIR, unless already made in which case we'll append to it */ X@@ -1905,15 +1907,15 @@ X X /* other stuff */ X if (AMITK_DATA_SET_SUBJECT_NAME(ds) != NULL) X- insert_str(dcm_ds,DCM_PatientsName, AMITK_DATA_SET_SUBJECT_NAME(ds)); X+ insert_str(dcm_ds,DCM_PatientName, AMITK_DATA_SET_SUBJECT_NAME(ds)); X if (AMITK_DATA_SET_SUBJECT_ID(ds) != NULL) X insert_str(dcm_ds,DCM_PatientID, AMITK_DATA_SET_SUBJECT_ID(ds)); X if (AMITK_DATA_SET_SUBJECT_DOB(ds) != NULL) X- insert_str(dcm_ds,DCM_PatientsBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); X+ insert_str(dcm_ds,DCM_PatientBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); X if (AMITK_OBJECT_NAME(ds) != NULL) X insert_str(dcm_ds,DCM_StudyDescription, AMITK_OBJECT_NAME(ds)); X insert_double(dcm_ds,DCM_RadionuclideTotalDose, AMITK_DATA_SET_INJECTED_DOSE(ds)); X- insert_double(dcm_ds,DCM_PatientsWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); X+ insert_double(dcm_ds,DCM_PatientWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); X X switch(AMITK_DATA_SET_SUBJECT_ORIENTATION(ds)) { X case AMITK_SUBJECT_ORIENTATION_SUPINE_HEADFIRST: X@@ -1949,7 +1951,7 @@ X case AMITK_MODALITY_PET: X insert_str(dcm_ds,DCM_Modality, "PT"); X dcm_metainfo->putAndInsertString(DCM_MediaStorageSOPClassUID, X- UID_PETImageStorage); X+ UID_EnhancedPETImageStorage); X break; X case AMITK_MODALITY_SPECT: X insert_str(dcm_ds,DCM_Modality, "ST"); cc1f306257c8a737c71ba908e7afb0a1 echo x - amide/files/patch-src-mpeg_encode.c sed 's/^X//' >amide/files/patch-src-mpeg_encode.c << '3725c3aad1f588c3da24995d709ac726' X--- src/mpeg_encode.c.orig 2009-11-16 07:55:52.000000000 +0100 X+++ src/mpeg_encode.c 2011-02-08 16:18:47.640994869 +0100 X@@ -141,7 +141,7 @@ X /* -------------------------------------------------------- */ X #ifdef AMIDE_FFMPEG_SUPPORT X X-#include X+#include X X X typedef struct { 3725c3aad1f588c3da24995d709ac726 echo x - amide/files/patch-configure sed 's/^X//' >amide/files/patch-configure << 'edf246f5949e6a0eb1ff96eb9630b11a' X--- configure.orig 2009-12-09 07:35:12.000000000 +0100 X+++ configure 2011-02-10 18:25:18.165872253 +0100 X@@ -17889,13 +17889,13 @@ X DATADIRNAME=share X else X CATOBJEXT=.mo X- DATADIRNAME=lib X+ DATADIRNAME=share X fi X X ;; X *) X CATOBJEXT=.mo X- DATADIRNAME=lib X+ DATADIRNAME=share X ;; X esac X fi X@@ -18684,12 +18684,12 @@ X if test "x$ac_cv_func_bind_textdomain_codeset" = x""yes; then X DATADIRNAME=share X else X- DATADIRNAME=lib X+ DATADIRNAME=share X fi X X ;; X *) X- DATADIRNAME=lib X+ DATADIRNAME=share X ;; X esac X fi X@@ -19625,7 +19625,7 @@ X $as_echo_n "(cached) " >&6 X else X ac_check_lib_save_LIBS=$LIBS X-LIBS="-ldcmdata -lofstd -lz -L/usr/local/dicom/lib -L/sw/lib $THREAD_LIBS $LIBS" X+LIBS="-ldcmdata -lofstd -loflog -lz -L/usr/local/lib $THREAD_LIBS $LIBS" X cat >conftest.$ac_ext <<_ACEOF X /* confdefs.h. */ X _ACEOF X@@ -20391,8 +20391,8 @@ X X if (test $enable_libdcmdata = yes) && (test $FOUND_DCMDATA = yes); then X echo "Compiling with DCMTK support for DICOM files" X- AMIDE_LIBDCMDATA_LIBS="-L/usr/local/dicom/lib -ldcmdata -lofstd -lz $THREAD_LIBS" X- AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/dicom/include/dcmtk/dcmdata -I/usr/local/dicom/include/dcmtk/ofstd -I/usr/local/dicom/include -I/usr/include/dcmtk/dcmdata -I/usr/local/include/dcmtk/ofstd -I/sw/include/dcmtk/dcmdata -I/sw/include/dcmtk/ofstd -I/sw/include/dcmtk" X+ AMIDE_LIBDCMDATA_LIBS="-L/usr/local/lib -ldcmdata -lofstd -loflog -lz $THREAD_LIBS" X+ AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/include" X X X edf246f5949e6a0eb1ff96eb9630b11a echo x - amide/files/patch-src-ui_common.c sed 's/^X//' >amide/files/patch-src-ui_common.c << '4e358bc0aa0d9570a2851f9e28f67eda' X--- src/ui_common.c.orig 2009-11-16 06:00:11.000000000 +0100 X+++ src/ui_common.c 2011-02-08 16:21:18.283127798 +0100 X@@ -46,7 +46,7 @@ X #include X #endif X #ifdef AMIDE_FFMPEG_SUPPORT X-#include X+#include X #endif X #ifdef AMIDE_LIBFAME_SUPPORT X #include 4e358bc0aa0d9570a2851f9e28f67eda echo x - amide/distinfo sed 's/^X//' >amide/distinfo << 'ad578294527550f12af59332c0ec2462' XSHA256 (amide-0.9.2.tgz) = bbe230b7aef3c65ef2014d561a09d97b96e50ec4f1a09c16b4de751974ff01be XSIZE (amide-0.9.2.tgz) = 1476952 ad578294527550f12af59332c0ec2462 echo x - amide/Makefile sed 's/^X//' >amide/Makefile << 'd8e16f3c873a37b8d1f71e59a739bb03' X# New ports collection makefile for: amide X# Date created: 8 Febrary 2011 X# Whom: Guido Falsi X# X# $FreeBSD$ X# X XPORTNAME= amide XPORTVERSION= 0.9.2 XCATEGORIES= graphics XMASTER_SITES= SF XEXTRACT_SUFX= .tgz X XMAINTAINER= mad@madpilot.net XCOMMENT= Medical Imaging Data Examiner X XLICENSE= GPLv2 XLICENSE_FILE= ${WRKSRC}/COPYING X XUSE_GMAKE= yes XUSE_GNOME= gtk20 libgnomecanvas libgnomeui libxml2 XGNU_CONFIGURE= yes XUSE_GETTEXT= yes XMAKE_JOBS_UNSAFE= yes XINSTALLS_OMF= yes XMAN1= amide.1 X XRUN_DEPENDS+= medcon:${PORTSDIR}/graphics/xmedcon X XOPTIONS= XMEDCON "Use xmedcon" on \ X DCMTK "Use dcmtk" on \ X FFMPEG "Use ffmpeg" on \ X GSL "Use gsl" on X X.include X X.if exists(${LOCALBASE}/lib/libmdc.so) || defined(WITH_XMEDCON) XLIB_DEPENDS+= mdc.2:${PORTSDIR}/graphics/xmedcon X.endif X X.if exists(${LOCALBASE}/lib/libdcmimage.so) || defined(WITH_DCMTK) XLIB_DEPENDS+= dcmimage.3:${PORTSDIR}/devel/dcmtk X.endif X X.if exists(${LOCALBASE}/lib/libavcodec.so) || defined(WITH_FFMPEG) XLIB_DEPENDS+= avcodec.1:${PORTSDIR}/multimedia/ffmpeg X.endif X X.if exists(${LOCALBASE}/lib/libgsl.so) || defined(WITH_GSL) XLIB_DEPENDS+= gsl.15:${PORTSDIR}/math/gsl X.endif X X.if defined(WITHOUT_NLS) XCONFIGURE_ARGS+= --disable-nls XPLIST_SUB+= NLS='@comment ' X.else XPLIST_SUB+= NLS='' X.endif X X.include d8e16f3c873a37b8d1f71e59a739bb03 echo x - amide/pkg-descr sed 's/^X//' >amide/pkg-descr << 'bfc5be818aec573dcc3d1ecf2eb218f0' XAMIDE is a competely free tool for viewing, analyzing, and registering Xvolumetric medical imaging data sets. It's been written on top of XGTK+, and runs on any system that supports this toolkit X XWWW: http://amide.sourceforge.net/ X X-- XGuido Falsi bfc5be818aec573dcc3d1ecf2eb218f0 exit