FreeBSD Bugzilla – Attachment 113625 Details for
Bug 155198
New port: graphics/amide Medical Imaging Data Examiner
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file.shar
file.shar (text/plain), 12.80 KB, created by
Guido Falsi
on 2011-03-02 16:20:10 UTC
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Description:
file.shar
Filename:
MIME Type:
Creator:
Guido Falsi
Created:
2011-03-02 16:20:10 UTC
Size:
12.80 KB
patch
obsolete
># This is a shell archive. Save it in a file, remove anything before ># this line, and then unpack it by entering "sh file". Note, it may ># create directories; files and directories will be owned by you and ># have default permissions. ># ># This archive contains: ># ># amide ># amide/pkg-plist ># amide/files ># amide/files/patch-src-dcmtk_interface.cc ># amide/files/patch-src-mpeg_encode.c ># amide/files/patch-configure ># amide/files/patch-src-ui_common.c ># amide/distinfo ># amide/Makefile ># amide/pkg-descr ># >echo c - amide >mkdir -p amide > /dev/null 2>&1 >echo x - amide/pkg-plist >sed 's/^X//' >amide/pkg-plist << '78fb43cec2a4789dedc6b9c63d8d0ee4' >Xbin/amide >Xshare/applications/amide.desktop >Xshare/gnome/help/amide/C/amide.xml >Xshare/gnome/help/amide/C/figures/amide_main_window.png >Xshare/gnome/help/amide/C/figures/study_tree.png >Xshare/gnome/help/amide/C/legal.xml >Xshare/gnome/help/amide/es/amide.xml >Xshare/gnome/help/amide/es/figures/amide_main_window.png >Xshare/gnome/help/amide/es/figures/study_tree.png >Xshare/gnome/help/amide/es/legal.xml >Xshare/gtk-doc/html/amitk/AmitkWidgets.html >Xshare/gtk-doc/html/amitk/SpaceObjects.html >Xshare/gtk-doc/html/amitk/amitk-AmitkCanvas.html >Xshare/gtk-doc/html/amitk/amitk-AmitkColorTableMenu.html >Xshare/gtk-doc/html/amitk/amitk-AmitkDataSet.html >Xshare/gtk-doc/html/amitk/amitk-AmitkFiducialMark.html >Xshare/gtk-doc/html/amitk/amitk-AmitkLineProfile.html >Xshare/gtk-doc/html/amitk/amitk-AmitkObject.html >Xshare/gtk-doc/html/amitk/amitk-AmitkObjectDialog.html >Xshare/gtk-doc/html/amitk/amitk-AmitkProgressDialog.html >Xshare/gtk-doc/html/amitk/amitk-AmitkRawData.html >Xshare/gtk-doc/html/amitk/amitk-AmitkRoi.html >Xshare/gtk-doc/html/amitk/amitk-AmitkSpace.html >Xshare/gtk-doc/html/amitk/amitk-AmitkSpaceEdit.html >Xshare/gtk-doc/html/amitk/amitk-AmitkStudy.html >Xshare/gtk-doc/html/amitk/amitk-AmitkThresholdsDialog.html >Xshare/gtk-doc/html/amitk/amitk-AmitkTreeView.html >Xshare/gtk-doc/html/amitk/amitk-AmitkVolume.html >Xshare/gtk-doc/html/amitk/amitk-amitk-canvas-object.html >Xshare/gtk-doc/html/amitk/amitk-amitk-color-table.html >Xshare/gtk-doc/html/amitk/amitk-amitk-common.html >Xshare/gtk-doc/html/amitk/amitk-amitk-filter.html >Xshare/gtk-doc/html/amitk/amitk-amitk-point.html >Xshare/gtk-doc/html/amitk/amitk-amitk-type.html >Xshare/gtk-doc/html/amitk/amitk-theory.html >Xshare/gtk-doc/html/amitk/amitk.devhelp >Xshare/gtk-doc/html/amitk/amitk.devhelp2 >Xshare/gtk-doc/html/amitk/amitk_base.html >Xshare/gtk-doc/html/amitk/amitk_intro.html >Xshare/gtk-doc/html/amitk/amitk_objects.html >Xshare/gtk-doc/html/amitk/ch01.html >Xshare/gtk-doc/html/amitk/home.png >Xshare/gtk-doc/html/amitk/index.html >Xshare/gtk-doc/html/amitk/index.sgml >Xshare/gtk-doc/html/amitk/left.png >Xshare/gtk-doc/html/amitk/right.png >Xshare/gtk-doc/html/amitk/style.css >Xshare/gtk-doc/html/amitk/up.png >X%%NLS%%share/locale/zh_CN/LC_MESSAGES/amide.mo >Xshare/omf/amide/amide-C.omf >Xshare/omf/amide/amide-es.omf >Xshare/pixmaps/amide_logo.png >Xshare/pixmaps/amide_file_logo.png >X@dirrm share/gtk-doc/html/amitk >X@dirrm share/gnome/help/amide/es/figures >X@dirrm share/gnome/help/amide/es >X@dirrm share/gnome/help/amide/C/figures >X@dirrm share/gnome/help/amide/C >X@dirrm share/gnome/help/amide >X@dirrm share/omf/amide >78fb43cec2a4789dedc6b9c63d8d0ee4 >echo c - amide/files >mkdir -p amide/files > /dev/null 2>&1 >echo x - amide/files/patch-src-dcmtk_interface.cc >sed 's/^X//' >amide/files/patch-src-dcmtk_interface.cc << 'cc1f306257c8a737c71ba908e7afb0a1' >X--- src/dcmtk_interface.cc.orig 2009-12-14 05:53:11.000000000 +0100 >X+++ src/dcmtk_interface.cc 2011-02-11 10:59:18.612565854 +0100 >X@@ -32,7 +32,7 @@ >X #include <unistd.h> >X #endif >X #include "dcmtk_interface.h" >X-#include "dcddirif.h" /* for class DicomDirInterface */ >X+#include "dcmtk/dcmdata/dcddirif.h" /* for class DicomDirInterface */ >X #include <dirent.h> >X #include <sys/stat.h> >X #include "amitk_data_set_DOUBLE_0D_SCALING.h" >X@@ -44,7 +44,8 @@ >X #undef PACKAGE_STRING >X #undef PACKAGE_TARNAME >X #undef PACKAGE_VERSION >X-#include <dctk.h> >X+#include "amide_config.h" >X+#include <dcmtk/dcmdata/dctk.h> >X //#include <dcostrmb.h> >X const gchar * dcmtk_version = OFFIS_DCMTK_VERSION; >X >X@@ -188,7 +189,7 @@ >X } >X dim.y = return_uint16; >X >X- if (dcm_dataset->findAndGetUint16(DCM_Planes, return_uint16).bad()) >X+ if (dcm_dataset->findAndGetUint16(DCM_RETIRED_Planes, return_uint16).bad()) >X dim.z = 1; >X else >X dim.z = return_uint16; >X@@ -352,7 +353,7 @@ >X if (dcm_dataset->findAndGetString(DCM_PatientID, return_str, OFTrue).good()) >X amitk_data_set_set_subject_id(ds, return_str); >X >X- if (dcm_dataset->findAndGetFloat64(DCM_PatientsWeight, return_float64).good()) { >X+ if (dcm_dataset->findAndGetFloat64(DCM_PatientWeight, return_float64).good()) { >X amitk_data_set_set_subject_weight(ds, return_float64); >X amitk_data_set_set_displayed_weight_unit(ds, AMITK_WEIGHT_UNIT_KILOGRAM); >X } >X@@ -429,7 +430,7 @@ >X } >X } >X >X- if (dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue).good()) { >X+ if (dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue).good()) { >X if (AMITK_OBJECT_NAME(ds) == NULL) >X amitk_object_set_name(AMITK_OBJECT(ds), return_str); >X amitk_data_set_set_subject_name(ds, return_str); >X@@ -495,7 +496,7 @@ >X } >X } >X >X- if (dcm_dataset->findAndGetString(DCM_PatientsBirthDate, return_str, OFTrue).good()) >X+ if (dcm_dataset->findAndGetString(DCM_PatientBirthDate, return_str, OFTrue).good()) >X amitk_data_set_set_subject_dob(ds, return_str); >X >X /* because of how the dicom coordinates are setup, after reading in the patient slices, >X@@ -1257,7 +1258,7 @@ >X if (return_str != NULL) >X info->patient_id = g_strdup(return_str); >X >X- dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue); >X+ dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue); >X if (return_str != NULL) >X info->patient_name = g_strdup(return_str); >X >X@@ -1537,7 +1538,7 @@ >X >X /* go through the whole directory */ >X while ((patient_record = dcm_root_record->nextSub(patient_record)) != NULL) { >X- patient_record->findAndGetString(DCM_PatientsName, record_name[0]); >X+ patient_record->findAndGetString(DCM_PatientName, record_name[0]); >X patient_record->findAndGetString(DCM_PatientID, patient_id, OFTrue); >X >X >X@@ -1802,8 +1803,9 @@ >X } >X >X #ifdef AMIDE_DEBUG >X- dcm_dir.enableVerboseMode(TRUE); >X- dcm_dir.setLogStream(&ofConsole); >X+// These are not defined in the latest dcmtk and could not find substitutes. >X+// dcm_dir.enableVerboseMode(TRUE); >X+// dcm_dir.setLogStream(&ofConsole); >X #endif >X >X /* create the DICOMDIR, unless already made in which case we'll append to it */ >X@@ -1905,15 +1907,15 @@ >X >X /* other stuff */ >X if (AMITK_DATA_SET_SUBJECT_NAME(ds) != NULL) >X- insert_str(dcm_ds,DCM_PatientsName, AMITK_DATA_SET_SUBJECT_NAME(ds)); >X+ insert_str(dcm_ds,DCM_PatientName, AMITK_DATA_SET_SUBJECT_NAME(ds)); >X if (AMITK_DATA_SET_SUBJECT_ID(ds) != NULL) >X insert_str(dcm_ds,DCM_PatientID, AMITK_DATA_SET_SUBJECT_ID(ds)); >X if (AMITK_DATA_SET_SUBJECT_DOB(ds) != NULL) >X- insert_str(dcm_ds,DCM_PatientsBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); >X+ insert_str(dcm_ds,DCM_PatientBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); >X if (AMITK_OBJECT_NAME(ds) != NULL) >X insert_str(dcm_ds,DCM_StudyDescription, AMITK_OBJECT_NAME(ds)); >X insert_double(dcm_ds,DCM_RadionuclideTotalDose, AMITK_DATA_SET_INJECTED_DOSE(ds)); >X- insert_double(dcm_ds,DCM_PatientsWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); >X+ insert_double(dcm_ds,DCM_PatientWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); >X >X switch(AMITK_DATA_SET_SUBJECT_ORIENTATION(ds)) { >X case AMITK_SUBJECT_ORIENTATION_SUPINE_HEADFIRST: >X@@ -1949,7 +1951,7 @@ >X case AMITK_MODALITY_PET: >X insert_str(dcm_ds,DCM_Modality, "PT"); >X dcm_metainfo->putAndInsertString(DCM_MediaStorageSOPClassUID, >X- UID_PETImageStorage); >X+ UID_EnhancedPETImageStorage); >X break; >X case AMITK_MODALITY_SPECT: >X insert_str(dcm_ds,DCM_Modality, "ST"); >cc1f306257c8a737c71ba908e7afb0a1 >echo x - amide/files/patch-src-mpeg_encode.c >sed 's/^X//' >amide/files/patch-src-mpeg_encode.c << '3725c3aad1f588c3da24995d709ac726' >X--- src/mpeg_encode.c.orig 2009-11-16 07:55:52.000000000 +0100 >X+++ src/mpeg_encode.c 2011-02-08 16:18:47.640994869 +0100 >X@@ -141,7 +141,7 @@ >X /* -------------------------------------------------------- */ >X #ifdef AMIDE_FFMPEG_SUPPORT >X >X-#include <ffmpeg/libavcodec/avcodec.h> >X+#include <libavcodec/avcodec.h> >X >X >X typedef struct { >3725c3aad1f588c3da24995d709ac726 >echo x - amide/files/patch-configure >sed 's/^X//' >amide/files/patch-configure << 'edf246f5949e6a0eb1ff96eb9630b11a' >X--- configure.orig 2009-12-09 07:35:12.000000000 +0100 >X+++ configure 2011-02-10 18:25:18.165872253 +0100 >X@@ -17889,13 +17889,13 @@ >X DATADIRNAME=share >X else >X CATOBJEXT=.mo >X- DATADIRNAME=lib >X+ DATADIRNAME=share >X fi >X >X ;; >X *) >X CATOBJEXT=.mo >X- DATADIRNAME=lib >X+ DATADIRNAME=share >X ;; >X esac >X fi >X@@ -18684,12 +18684,12 @@ >X if test "x$ac_cv_func_bind_textdomain_codeset" = x""yes; then >X DATADIRNAME=share >X else >X- DATADIRNAME=lib >X+ DATADIRNAME=share >X fi >X >X ;; >X *) >X- DATADIRNAME=lib >X+ DATADIRNAME=share >X ;; >X esac >X fi >X@@ -19625,7 +19625,7 @@ >X $as_echo_n "(cached) " >&6 >X else >X ac_check_lib_save_LIBS=$LIBS >X-LIBS="-ldcmdata -lofstd -lz -L/usr/local/dicom/lib -L/sw/lib $THREAD_LIBS $LIBS" >X+LIBS="-ldcmdata -lofstd -loflog -lz -L/usr/local/lib $THREAD_LIBS $LIBS" >X cat >conftest.$ac_ext <<_ACEOF >X /* confdefs.h. */ >X _ACEOF >X@@ -20391,8 +20391,8 @@ >X >X if (test $enable_libdcmdata = yes) && (test $FOUND_DCMDATA = yes); then >X echo "Compiling with DCMTK support for DICOM files" >X- AMIDE_LIBDCMDATA_LIBS="-L/usr/local/dicom/lib -ldcmdata -lofstd -lz $THREAD_LIBS" >X- AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/dicom/include/dcmtk/dcmdata -I/usr/local/dicom/include/dcmtk/ofstd -I/usr/local/dicom/include -I/usr/include/dcmtk/dcmdata -I/usr/local/include/dcmtk/ofstd -I/sw/include/dcmtk/dcmdata -I/sw/include/dcmtk/ofstd -I/sw/include/dcmtk" >X+ AMIDE_LIBDCMDATA_LIBS="-L/usr/local/lib -ldcmdata -lofstd -loflog -lz $THREAD_LIBS" >X+ AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/include" >X >X >X >edf246f5949e6a0eb1ff96eb9630b11a >echo x - amide/files/patch-src-ui_common.c >sed 's/^X//' >amide/files/patch-src-ui_common.c << '4e358bc0aa0d9570a2851f9e28f67eda' >X--- src/ui_common.c.orig 2009-11-16 06:00:11.000000000 +0100 >X+++ src/ui_common.c 2011-02-08 16:21:18.283127798 +0100 >X@@ -46,7 +46,7 @@ >X #include <medcon.h> >X #endif >X #ifdef AMIDE_FFMPEG_SUPPORT >X-#include <ffmpeg/libavcodec/avcodec.h> >X+#include <libavcodec/avcodec.h> >X #endif >X #ifdef AMIDE_LIBFAME_SUPPORT >X #include <fame_version.h> >4e358bc0aa0d9570a2851f9e28f67eda >echo x - amide/distinfo >sed 's/^X//' >amide/distinfo << 'ad578294527550f12af59332c0ec2462' >XSHA256 (amide-0.9.2.tgz) = bbe230b7aef3c65ef2014d561a09d97b96e50ec4f1a09c16b4de751974ff01be >XSIZE (amide-0.9.2.tgz) = 1476952 >ad578294527550f12af59332c0ec2462 >echo x - amide/Makefile >sed 's/^X//' >amide/Makefile << 'd8e16f3c873a37b8d1f71e59a739bb03' >X# New ports collection makefile for: amide >X# Date created: 8 Febrary 2011 >X# Whom: Guido Falsi <mad@madpilot.net> >X# >X# $FreeBSD$ >X# >X >XPORTNAME= amide >XPORTVERSION= 0.9.2 >XCATEGORIES= graphics >XMASTER_SITES= SF >XEXTRACT_SUFX= .tgz >X >XMAINTAINER= mad@madpilot.net >XCOMMENT= Medical Imaging Data Examiner >X >XLICENSE= GPLv2 >XLICENSE_FILE= ${WRKSRC}/COPYING >X >XUSE_GMAKE= yes >XUSE_GNOME= gtk20 libgnomecanvas libgnomeui libxml2 >XGNU_CONFIGURE= yes >XUSE_GETTEXT= yes >XMAKE_JOBS_UNSAFE= yes >XINSTALLS_OMF= yes >XMAN1= amide.1 >X >XRUN_DEPENDS+= medcon:${PORTSDIR}/graphics/xmedcon >X >XOPTIONS= XMEDCON "Use xmedcon" on \ >X DCMTK "Use dcmtk" on \ >X FFMPEG "Use ffmpeg" on \ >X GSL "Use gsl" on >X >X.include <bsd.port.pre.mk> >X >X.if exists(${LOCALBASE}/lib/libmdc.so) || defined(WITH_XMEDCON) >XLIB_DEPENDS+= mdc.2:${PORTSDIR}/graphics/xmedcon >X.endif >X >X.if exists(${LOCALBASE}/lib/libdcmimage.so) || defined(WITH_DCMTK) >XLIB_DEPENDS+= dcmimage.3:${PORTSDIR}/devel/dcmtk >X.endif >X >X.if exists(${LOCALBASE}/lib/libavcodec.so) || defined(WITH_FFMPEG) >XLIB_DEPENDS+= avcodec.1:${PORTSDIR}/multimedia/ffmpeg >X.endif >X >X.if exists(${LOCALBASE}/lib/libgsl.so) || defined(WITH_GSL) >XLIB_DEPENDS+= gsl.15:${PORTSDIR}/math/gsl >X.endif >X >X.if defined(WITHOUT_NLS) >XCONFIGURE_ARGS+= --disable-nls >XPLIST_SUB+= NLS='@comment ' >X.else >XPLIST_SUB+= NLS='' >X.endif >X >X.include <bsd.port.post.mk> >d8e16f3c873a37b8d1f71e59a739bb03 >echo x - amide/pkg-descr >sed 's/^X//' >amide/pkg-descr << 'bfc5be818aec573dcc3d1ecf2eb218f0' >XAMIDE is a competely free tool for viewing, analyzing, and registering >Xvolumetric medical imaging data sets. It's been written on top of >XGTK+, and runs on any system that supports this toolkit >X >XWWW: http://amide.sourceforge.net/ >X >X-- >XGuido Falsi <mad@madpilot.net> >bfc5be818aec573dcc3d1ecf2eb218f0 >exit
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bug 155198
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