Attachment 113626 Details for Bug 155198 – amide.sh.txt

amide.sh.txt

amide.sh.txt (text/plain; charset="ISO-8859-1"), 12.83 KB, created by Ganael LAPLANCHE on 2011-03-09 08:08:48 UTC

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Creator: Ganael LAPLANCHE

Created: 2011-03-09 08:08:48 UTC

Size: 12.83 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	amide
>#	amide/pkg-descr
>#	amide/distinfo
>#	amide/Makefile
>#	amide/pkg-plist
>#	amide/files
>#	amide/files/patch-src-mpeg_encode.c
>#	amide/files/patch-src-ui_common.c
>#	amide/files/patch-configure
>#	amide/files/patch-src-dcmtk_interface.cc
>#
>echo c - amide
>mkdir -p amide > /dev/null 2>&1
>echo x - amide/pkg-descr
>sed 's/^X//' >amide/pkg-descr << 'bfc5be818aec573dcc3d1ecf2eb218f0'
>XAMIDE is a competely free tool for viewing, analyzing, and registering
>Xvolumetric medical imaging data sets. It's been written on top of GTK+,
>Xand runs on any system that supports this toolkit.
>X
>XWWW: http://amide.sourceforge.net
>bfc5be818aec573dcc3d1ecf2eb218f0
>echo x - amide/distinfo
>sed 's/^X//' >amide/distinfo << 'ad578294527550f12af59332c0ec2462'
>XSHA256 (amide-0.9.2.tgz) = bbe230b7aef3c65ef2014d561a09d97b96e50ec4f1a09c16b4de751974ff01be
>XSIZE (amide-0.9.2.tgz) = 1476952
>ad578294527550f12af59332c0ec2462
>echo x - amide/Makefile
>sed 's/^X//' >amide/Makefile << 'd8e16f3c873a37b8d1f71e59a739bb03'
>X# New ports collection makefile for:   amide
>X# Date created:        8 Feb 2011
>X# Whom:                Guido Falsi <mad@madpilot.net>
>X#
>X# $FreeBSD$
>X#
>X
>XPORTNAME=	amide
>XPORTVERSION=	0.9.2
>XCATEGORIES=	graphics
>XMASTER_SITES=	SF
>XEXTRACT_SUFX=	.tgz
>X
>XMAINTAINER=	mad@madpilot.net
>XCOMMENT=	Medical Imaging Data Examiner
>X
>XLICENSE=	GPLv2
>X
>XUSE_GMAKE=	yes
>XUSE_GNOME=	gtk20 libgnomecanvas libgnomeui libxml2
>XGNU_CONFIGURE=	yes
>XUSE_GETTEXT=	yes
>XMAKE_JOBS_UNSAFE=	yes
>XINSTALLS_OMF=	yes
>XMAN1=		amide.1
>X
>XOPTIONS=	XMEDCON	"Use xmedcon"	on \
>X		DCMTK	"Use dcmtk"	on \
>X		FFMPEG	"Use ffmpeg"	on \
>X		GSL	"Use gsl"	on
>X
>X.include <bsd.port.pre.mk>
>X
>X.if !defined(WITHOUT_XMEDCON)
>XLIB_DEPENDS+=	mdc.2:${PORTSDIR}/graphics/xmedcon
>XCONFIGUE_ARGS+=	--enable-libmdc
>X.else
>XCONFIGUE_ARGS+=	--disable-libmdc
>X.endif
>X
>X.if !defined(WITHOUT_DCMTK)
>XLIB_DEPENDS+=	dcmdata.3:${PORTSDIR}/devel/dcmtk
>XCONFIGUE_ARGS+=	--enable-libdcmdata
>X.else
>XCONFIGUE_ARGS+=	--disable-libdcmdata
>X.endif
>X
>X.if !defined(WITHOUT_FFMPEG)
>XLIB_DEPENDS+=	avcodec.1:${PORTSDIR}/multimedia/ffmpeg
>XCONFIGUE_ARGS+=	--enable-ffmpeg
>X.else
>XCONFIGUE_ARGS+=	--disable-ffmpeg
>X.endif
>X
>X.if !defined(WITHOUT_GSL)
>XLIB_DEPENDS+=	gsl.15:${PORTSDIR}/math/gsl
>XCONFIGUE_ARGS+=	--enable-libgsl
>X.else
>XCONFIGUE_ARGS+=	--disable-libgsl
>X.endif
>X
>X.if defined(WITHOUT_NLS)
>XCONFIGURE_ARGS+=	--disable-nls
>XPLIST_SUB+=	NLS='@comment '
>X.else
>XPLIST_SUB+=	NLS=''
>X.endif
>X
>X.include <bsd.port.post.mk>
>d8e16f3c873a37b8d1f71e59a739bb03
>echo x - amide/pkg-plist
>sed 's/^X//' >amide/pkg-plist << '78fb43cec2a4789dedc6b9c63d8d0ee4'
>Xbin/amide
>Xshare/applications/amide.desktop
>Xshare/gnome/help/amide/C/amide.xml
>Xshare/gnome/help/amide/C/figures/amide_main_window.png
>Xshare/gnome/help/amide/C/figures/study_tree.png
>Xshare/gnome/help/amide/C/legal.xml
>Xshare/gnome/help/amide/es/amide.xml
>Xshare/gnome/help/amide/es/figures/amide_main_window.png
>Xshare/gnome/help/amide/es/figures/study_tree.png
>Xshare/gnome/help/amide/es/legal.xml
>Xshare/gtk-doc/html/amitk/AmitkWidgets.html
>Xshare/gtk-doc/html/amitk/SpaceObjects.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkCanvas.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkColorTableMenu.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkDataSet.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkFiducialMark.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkLineProfile.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkObject.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkObjectDialog.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkProgressDialog.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkRawData.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkRoi.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkSpace.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkSpaceEdit.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkStudy.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkThresholdsDialog.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkTreeView.html
>Xshare/gtk-doc/html/amitk/amitk-AmitkVolume.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-canvas-object.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-color-table.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-common.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-filter.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-point.html
>Xshare/gtk-doc/html/amitk/amitk-amitk-type.html
>Xshare/gtk-doc/html/amitk/amitk-theory.html
>Xshare/gtk-doc/html/amitk/amitk.devhelp
>Xshare/gtk-doc/html/amitk/amitk.devhelp2
>Xshare/gtk-doc/html/amitk/amitk_base.html
>Xshare/gtk-doc/html/amitk/amitk_intro.html
>Xshare/gtk-doc/html/amitk/amitk_objects.html
>Xshare/gtk-doc/html/amitk/ch01.html
>Xshare/gtk-doc/html/amitk/home.png
>Xshare/gtk-doc/html/amitk/index.html
>Xshare/gtk-doc/html/amitk/index.sgml
>Xshare/gtk-doc/html/amitk/left.png
>Xshare/gtk-doc/html/amitk/right.png
>Xshare/gtk-doc/html/amitk/style.css
>Xshare/gtk-doc/html/amitk/up.png
>X%%NLS%%share/locale/zh_CN/LC_MESSAGES/amide.mo
>Xshare/omf/amide/amide-C.omf
>Xshare/omf/amide/amide-es.omf
>Xshare/pixmaps/amide_logo.png
>Xshare/pixmaps/amide_file_logo.png
>X@dirrm share/gtk-doc/html/amitk
>X@dirrm share/gnome/help/amide/es/figures
>X@dirrm share/gnome/help/amide/es
>X@dirrm share/gnome/help/amide/C/figures
>X@dirrm share/gnome/help/amide/C
>X@dirrm share/gnome/help/amide
>X@dirrm share/omf/amide
>78fb43cec2a4789dedc6b9c63d8d0ee4
>echo c - amide/files
>mkdir -p amide/files > /dev/null 2>&1
>echo x - amide/files/patch-src-mpeg_encode.c
>sed 's/^X//' >amide/files/patch-src-mpeg_encode.c << '3725c3aad1f588c3da24995d709ac726'
>X--- src/mpeg_encode.c.orig	2009-11-16 07:55:52.000000000 +0100
>X+++ src/mpeg_encode.c	2011-02-08 16:18:47.640994869 +0100
>X@@ -141,7 +141,7 @@
>X /* -------------------------------------------------------- */
>X #ifdef AMIDE_FFMPEG_SUPPORT
>X 
>X-#include <ffmpeg/libavcodec/avcodec.h>
>X+#include <libavcodec/avcodec.h>
>X 
>X 
>X typedef struct {
>3725c3aad1f588c3da24995d709ac726
>echo x - amide/files/patch-src-ui_common.c
>sed 's/^X//' >amide/files/patch-src-ui_common.c << '4e358bc0aa0d9570a2851f9e28f67eda'
>X--- src/ui_common.c.orig	2009-11-16 06:00:11.000000000 +0100
>X+++ src/ui_common.c	2011-02-08 16:21:18.283127798 +0100
>X@@ -46,7 +46,7 @@
>X #include <medcon.h>
>X #endif
>X #ifdef AMIDE_FFMPEG_SUPPORT
>X-#include <ffmpeg/libavcodec/avcodec.h>
>X+#include <libavcodec/avcodec.h>
>X #endif
>X #ifdef AMIDE_LIBFAME_SUPPORT
>X #include <fame_version.h>
>4e358bc0aa0d9570a2851f9e28f67eda
>echo x - amide/files/patch-configure
>sed 's/^X//' >amide/files/patch-configure << 'edf246f5949e6a0eb1ff96eb9630b11a'
>X--- configure.orig	2009-12-09 07:35:12.000000000 +0100
>X+++ configure	2011-02-10 18:25:18.165872253 +0100
>X@@ -17889,13 +17889,13 @@
>X                DATADIRNAME=share
>X else
>X   CATOBJEXT=.mo
>X-               DATADIRNAME=lib
>X+               DATADIRNAME=share
>X fi
>X 
>X 	    ;;
>X 	    *)
>X 	    CATOBJEXT=.mo
>X-            DATADIRNAME=lib
>X+            DATADIRNAME=share
>X 	    ;;
>X 	    esac
>X fi
>X@@ -18684,12 +18684,12 @@
>X if test "x$ac_cv_func_bind_textdomain_codeset" = x""yes; then
>X   DATADIRNAME=share
>X else
>X-  DATADIRNAME=lib
>X+  DATADIRNAME=share
>X fi
>X 
>X     ;;
>X     *)
>X-    DATADIRNAME=lib
>X+    DATADIRNAME=share
>X     ;;
>X     esac
>X fi
>X@@ -19625,7 +19625,7 @@
>X   $as_echo_n "(cached) " >&6
>X else
>X   ac_check_lib_save_LIBS=$LIBS
>X-LIBS="-ldcmdata -lofstd  -lz -L/usr/local/dicom/lib -L/sw/lib $THREAD_LIBS $LIBS"
>X+LIBS="-ldcmdata -lofstd -loflog -lz -L/usr/local/lib $THREAD_LIBS $LIBS"
>X cat >conftest.$ac_ext <<_ACEOF
>X /* confdefs.h.  */
>X _ACEOF
>X@@ -20391,8 +20391,8 @@
>X 
>X if (test $enable_libdcmdata = yes) && (test $FOUND_DCMDATA = yes); then
>X 	echo "Compiling with DCMTK support for DICOM files"
>X-	AMIDE_LIBDCMDATA_LIBS="-L/usr/local/dicom/lib -ldcmdata -lofstd -lz $THREAD_LIBS"
>X-	AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/dicom/include/dcmtk/dcmdata -I/usr/local/dicom/include/dcmtk/ofstd -I/usr/local/dicom/include -I/usr/include/dcmtk/dcmdata -I/usr/local/include/dcmtk/ofstd -I/sw/include/dcmtk/dcmdata -I/sw/include/dcmtk/ofstd -I/sw/include/dcmtk"
>X+	AMIDE_LIBDCMDATA_LIBS="-L/usr/local/lib -ldcmdata -lofstd -loflog -lz $THREAD_LIBS"
>X+	AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/include"
>X 
>X 
>X 
>edf246f5949e6a0eb1ff96eb9630b11a
>echo x - amide/files/patch-src-dcmtk_interface.cc
>sed 's/^X//' >amide/files/patch-src-dcmtk_interface.cc << 'cc1f306257c8a737c71ba908e7afb0a1'
>X--- src/dcmtk_interface.cc.orig	2009-12-14 05:53:11.000000000 +0100
>X+++ src/dcmtk_interface.cc	2011-02-11 10:59:18.612565854 +0100
>X@@ -32,7 +32,7 @@
>X #include <unistd.h>
>X #endif
>X #include "dcmtk_interface.h" 
>X-#include "dcddirif.h"     /* for class DicomDirInterface */
>X+#include "dcmtk/dcmdata/dcddirif.h"     /* for class DicomDirInterface */
>X #include <dirent.h>
>X #include <sys/stat.h>
>X #include "amitk_data_set_DOUBLE_0D_SCALING.h"
>X@@ -44,7 +44,8 @@
>X #undef PACKAGE_STRING
>X #undef PACKAGE_TARNAME
>X #undef PACKAGE_VERSION
>X-#include <dctk.h>
>X+#include "amide_config.h"
>X+#include <dcmtk/dcmdata/dctk.h>
>X //#include <dcostrmb.h>
>X const gchar * dcmtk_version = OFFIS_DCMTK_VERSION;
>X 
>X@@ -188,7 +189,7 @@
>X   }
>X   dim.y = return_uint16;
>X 
>X-  if (dcm_dataset->findAndGetUint16(DCM_Planes, return_uint16).bad()) 
>X+  if (dcm_dataset->findAndGetUint16(DCM_RETIRED_Planes, return_uint16).bad()) 
>X     dim.z = 1;
>X   else
>X     dim.z = return_uint16;
>X@@ -352,7 +353,7 @@
>X   if (dcm_dataset->findAndGetString(DCM_PatientID, return_str, OFTrue).good()) 
>X     amitk_data_set_set_subject_id(ds, return_str);
>X 
>X-  if (dcm_dataset->findAndGetFloat64(DCM_PatientsWeight, return_float64).good()) {
>X+  if (dcm_dataset->findAndGetFloat64(DCM_PatientWeight, return_float64).good()) {
>X     amitk_data_set_set_subject_weight(ds, return_float64);
>X     amitk_data_set_set_displayed_weight_unit(ds, AMITK_WEIGHT_UNIT_KILOGRAM);
>X   }
>X@@ -429,7 +430,7 @@
>X     }
>X   }
>X 
>X-  if (dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue).good()) {
>X+  if (dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue).good()) {
>X       if (AMITK_OBJECT_NAME(ds) == NULL)
>X 	amitk_object_set_name(AMITK_OBJECT(ds), return_str);
>X       amitk_data_set_set_subject_name(ds, return_str);
>X@@ -495,7 +496,7 @@
>X     }
>X   }
>X 
>X-  if (dcm_dataset->findAndGetString(DCM_PatientsBirthDate, return_str, OFTrue).good()) 
>X+  if (dcm_dataset->findAndGetString(DCM_PatientBirthDate, return_str, OFTrue).good()) 
>X     amitk_data_set_set_subject_dob(ds, return_str);
>X 
>X   /* because of how the dicom coordinates are setup, after reading in the patient slices, 
>X@@ -1257,7 +1258,7 @@
>X   if (return_str != NULL) 
>X       info->patient_id = g_strdup(return_str);
>X 
>X-  dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue);
>X+  dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue);
>X   if (return_str != NULL) 
>X       info->patient_name = g_strdup(return_str);
>X 
>X@@ -1537,7 +1538,7 @@
>X 
>X   /* go through the whole directory */
>X   while ((patient_record = dcm_root_record->nextSub(patient_record)) != NULL) {
>X-    patient_record->findAndGetString(DCM_PatientsName, record_name[0]);
>X+    patient_record->findAndGetString(DCM_PatientName, record_name[0]);
>X     patient_record->findAndGetString(DCM_PatientID, patient_id, OFTrue);
>X 
>X 
>X@@ -1802,8 +1803,9 @@
>X   }
>X 
>X #ifdef AMIDE_DEBUG  
>X-  dcm_dir.enableVerboseMode(TRUE);
>X-  dcm_dir.setLogStream(&ofConsole);
>X+// These are not defined in the latest dcmtk and could not find substitutes.
>X+//  dcm_dir.enableVerboseMode(TRUE);
>X+//  dcm_dir.setLogStream(&ofConsole);
>X #endif
>X 
>X   /* create the DICOMDIR, unless already made in which case we'll append to it */
>X@@ -1905,15 +1907,15 @@
>X 
>X   /* other stuff */
>X   if (AMITK_DATA_SET_SUBJECT_NAME(ds) != NULL) 
>X-    insert_str(dcm_ds,DCM_PatientsName, AMITK_DATA_SET_SUBJECT_NAME(ds));
>X+    insert_str(dcm_ds,DCM_PatientName, AMITK_DATA_SET_SUBJECT_NAME(ds));
>X   if (AMITK_DATA_SET_SUBJECT_ID(ds) != NULL) 
>X     insert_str(dcm_ds,DCM_PatientID, AMITK_DATA_SET_SUBJECT_ID(ds));
>X   if (AMITK_DATA_SET_SUBJECT_DOB(ds) != NULL) 
>X-    insert_str(dcm_ds,DCM_PatientsBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds));
>X+    insert_str(dcm_ds,DCM_PatientBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds));
>X   if (AMITK_OBJECT_NAME(ds) != NULL)
>X     insert_str(dcm_ds,DCM_StudyDescription, AMITK_OBJECT_NAME(ds));
>X   insert_double(dcm_ds,DCM_RadionuclideTotalDose, AMITK_DATA_SET_INJECTED_DOSE(ds));
>X-  insert_double(dcm_ds,DCM_PatientsWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds));
>X+  insert_double(dcm_ds,DCM_PatientWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds));
>X 
>X   switch(AMITK_DATA_SET_SUBJECT_ORIENTATION(ds)) {
>X   case AMITK_SUBJECT_ORIENTATION_SUPINE_HEADFIRST:
>X@@ -1949,7 +1951,7 @@
>X   case AMITK_MODALITY_PET:
>X     insert_str(dcm_ds,DCM_Modality, "PT");
>X     dcm_metainfo->putAndInsertString(DCM_MediaStorageSOPClassUID,
>X-				     UID_PETImageStorage);
>X+				     UID_EnhancedPETImageStorage);
>X     break;
>X   case AMITK_MODALITY_SPECT:
>X     insert_str(dcm_ds,DCM_Modality, "ST");
>cc1f306257c8a737c71ba908e7afb0a1
>exit

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Attachments on bug 155198: 113625 | 113626