FreeBSD Bugzilla – Attachment 124103 Details for
Bug 167571
[new port] biology/seqan
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file.shar
file.shar (text/plain), 97.77 KB, created by
Hannes Hauswedell
on 2012-05-04 12:30:03 UTC
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hide
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Description:
file.shar
Filename:
MIME Type:
Creator:
Hannes Hauswedell
Created:
2012-05-04 12:30:03 UTC
Size:
97.77 KB
patch
obsolete
># This is a shell archive. Save it in a file, remove anything before ># this line, and then unpack it by entering "sh file". Note, it may ># create directories; files and directories will be owned by you and ># have default permissions. ># ># This archive contains: ># ># seqan ># seqan/Makefile ># seqan/pkg-descr ># seqan/distinfo ># seqan/pkg-plist ># seqan/files ># seqan/files/patch-cmake-apps-CMakeLists.txt ># seqan/files/patch-cmake-CMakeLists.txt ># seqan/pkg-message ># >echo c - seqan >mkdir -p seqan > /dev/null 2>&1 >echo x - seqan/Makefile >sed 's/^X//' >seqan/Makefile << '0bc92d9525ac789e54e36784e6b88bdb' >X# New ports collection makefile for: seqan >X# Date created: 3 May 2012 >X# Whom: h2 >X# >X# $FreeBSD$ >X# >X >XPORTNAME= seqan >XPORTVERSION= 1.3.1 >XCATEGORIES= biology >XMASTER_SITES= http://ftp.seqan.de/releases/ >X >XMAINTAINER= h2+fsbdports@fsfe.org >XCOMMENT= C++ Sequence Analysis Library >X >XLICENSE= BSD GPLv3 >XLICENSE_COMB= multi >XLICENSE_FILE=${WRKSRC}/seqan/LICENSE >XLICENSE_FILE=${WRKSRC}/apps/LICENSE >X >XUSE_ZIP= YES >X >XUSE_CMAKE= YES >XCMAKE_BUILD_TYPE=Release >XCMAKE_SOURCE_PATH=${WRKSRC}/cmake >XCMAKE_OUTSOURCE=YES >XUSE_PYTHON_BUILD=YES >XMAKE_JOB_SAFE= YES >X >X.include <bsd.port.pre.mk> >X >X# unsafe workaround because FreeBSD lacks logl and expl >X# see "BUGS" in `man 3 math` >Xpost-patch: >X @${REINPLACE_CMD} -e 's|expl|exp|g' ${WRKSRC}/apps/snp_store/snp_store.h >X @${REINPLACE_CMD} -e 's|logl|log|g' ${WRKSRC}/apps/snp_store/snp_store.h >X >Xpost-install: >X @${CAT} pkg-message | sed -e 's|/usr/local|'${PREFIX}'|g' >X >X.include <bsd.port.post.mk> >0bc92d9525ac789e54e36784e6b88bdb >echo x - seqan/pkg-descr >sed 's/^X//' >seqan/pkg-descr << 'b4e8fccfe625e12d2ba3d275b5b60480' >XSeqAn is an open source C++ library of efficient algorithms >Xand data structures for the analysis of sequences with the >Xfocus on biological data. The library is licensed under the >X3-clause BSD license except the applications which are GPL. >X >XWWW: http://www.seqan.de >b4e8fccfe625e12d2ba3d275b5b60480 >echo x - seqan/distinfo >sed 's/^X//' >seqan/distinfo << '693098415529dedda8b99fad24fa673e' >XSHA256 (seqan-1.3.1.zip) = 87eebe73ace9ada2f4664a768ae212d4acc5fb3ce87702709c3d15bf2d153aeb >XSIZE (seqan-1.3.1.zip) = 8787521 >693098415529dedda8b99fad24fa673e >echo x - seqan/pkg-plist >sed 's/^X//' >seqan/pkg-plist << 'c2d0b767f4af5a77aa847e7b4e826c70' >Xbin/dfi >Xbin/insegt >Xbin/mason >Xbin/micro_razers >Xbin/pair_align >Xbin/param_chooser >Xbin/rabema >Xbin/razers >Xbin/razers2 >Xbin/rep_sep >Xbin/sak >Xbin/seqan_tcoffee >Xbin/seqcons >Xbin/snp_store >Xbin/splazers >Xbin/stellar >Xbin/tree_recon >Xinclude/seqan.h >Xinclude/seqan/align.h >Xinclude/seqan/align/align_algorithms.h >Xinclude/seqan/align/align_base.h >Xinclude/seqan/align/align_cols_base.h >Xinclude/seqan/align/align_dynprog.h >Xinclude/seqan/align/align_generated_forwards.h >Xinclude/seqan/align/align_hirschberg.h >Xinclude/seqan/align/align_iterator_base.h >Xinclude/seqan/align/align_local_dynprog.h >Xinclude/seqan/align/align_local_dynprog_banded.h >Xinclude/seqan/align/align_myers.h >Xinclude/seqan/align/align_trace.h >Xinclude/seqan/align/gaps_array.h >Xinclude/seqan/align/gaps_base.h >Xinclude/seqan/align/gaps_iterator_base.h >Xinclude/seqan/align/gaps_sumlist.h >Xinclude/seqan/align/hirschberg_set.h >Xinclude/seqan/align/matrix_base.h >Xinclude/seqan/basic.h >Xinclude/seqan/basic/basic_aggregates.h >Xinclude/seqan/basic/basic_allocator_chunkpool.h >Xinclude/seqan/basic/basic_allocator_interface.h >Xinclude/seqan/basic/basic_allocator_multipool.h >Xinclude/seqan/basic/basic_allocator_simple.h >Xinclude/seqan/basic/basic_allocator_singlepool.h >Xinclude/seqan/basic/basic_allocator_to_std.h >Xinclude/seqan/basic/basic_alphabet_interface.h >Xinclude/seqan/basic/basic_alphabet_interface2.h >Xinclude/seqan/basic/basic_alphabet_simple.h >Xinclude/seqan/basic/basic_alphabet_simple_tabs.h >Xinclude/seqan/basic/basic_alphabet_trait_basic.h >Xinclude/seqan/basic/basic_compare.h >Xinclude/seqan/basic/basic_converter.h >Xinclude/seqan/basic/basic_counted_ptr.h >Xinclude/seqan/basic/basic_debug.h >Xinclude/seqan/basic/basic_definition.h >Xinclude/seqan/basic/basic_forwards.h >Xinclude/seqan/basic/basic_generated_forwards.h >Xinclude/seqan/basic/basic_holder.h >Xinclude/seqan/basic/basic_holder_dynamic.h >Xinclude/seqan/basic/basic_host.h >Xinclude/seqan/basic/basic_iterator.h >Xinclude/seqan/basic/basic_iterator_adapt_std.h >Xinclude/seqan/basic/basic_iterator_adaptor.h >Xinclude/seqan/basic/basic_iterator_base.h >Xinclude/seqan/basic/basic_iterator_position.h >Xinclude/seqan/basic/basic_iterator_simple.h >Xinclude/seqan/basic/basic_logvalue.h >Xinclude/seqan/basic/basic_metaprogramming.h >Xinclude/seqan/basic/basic_operator.h >Xinclude/seqan/basic/basic_parallelism.h >Xinclude/seqan/basic/basic_pointer.h >Xinclude/seqan/basic/basic_profchar.h >Xinclude/seqan/basic/basic_profile.h >Xinclude/seqan/basic/basic_proxy.h >Xinclude/seqan/basic/basic_sse2.h >Xinclude/seqan/basic/basic_tag.h >Xinclude/seqan/basic/basic_testing.h >Xinclude/seqan/basic/basic_transport.h >Xinclude/seqan/basic/basic_type.h >Xinclude/seqan/basic/basic_volatile_ptr.h >Xinclude/seqan/blast.h >Xinclude/seqan/blast/blast_base.h >Xinclude/seqan/blast/blast_generated_forwards.h >Xinclude/seqan/blast/blast_hit.h >Xinclude/seqan/blast/blast_hit_iterator.h >Xinclude/seqan/blast/blast_hsp.h >Xinclude/seqan/blast/blast_hsp_iterator.h >Xinclude/seqan/blast/blast_iterator.h >Xinclude/seqan/blast/blast_parsing.h >Xinclude/seqan/blast/blast_report.h >Xinclude/seqan/blast/blast_run.h >Xinclude/seqan/blast/blast_stream_hit.h >Xinclude/seqan/blast/blast_stream_hit_iterator.h >Xinclude/seqan/blast/blast_stream_hsp_iterator.h >Xinclude/seqan/blast/blast_stream_report.h >Xinclude/seqan/chaining.h >Xinclude/seqan/chaining/chain_base.h >Xinclude/seqan/chaining/chain_generic.h >Xinclude/seqan/chaining/chain_meta_fragment.h >Xinclude/seqan/chaining/chain_point.h >Xinclude/seqan/chaining/chain_wrapper_point.h >Xinclude/seqan/chaining/chaining_generated_forwards.h >Xinclude/seqan/chaining/fragment.h >Xinclude/seqan/chaining/geom_distribution.h >Xinclude/seqan/chaining/range_max_tree.h >Xinclude/seqan/chaining/range_tree.h >Xinclude/seqan/chaining/rmt_base.h >Xinclude/seqan/chaining/rmt_common_algos.h >Xinclude/seqan/chaining/rmt_compl_algos.h >Xinclude/seqan/chaining/rmt_def_algos.h >Xinclude/seqan/chaining/rmt_skip_base_element.h >Xinclude/seqan/chaining/rmt_skip_element.h >Xinclude/seqan/chaining/rt_base.h >Xinclude/seqan/chaining/rt_common_algos.h >Xinclude/seqan/chaining/rt_impl.h >Xinclude/seqan/chaining/rt_skip_base_element.h >Xinclude/seqan/chaining/rt_skip_element.h >Xinclude/seqan/chaining/rt_sl_base.h >Xinclude/seqan/chaining/rt_sl_compl_algos.h >Xinclude/seqan/chaining/rt_sl_def_algos.h >Xinclude/seqan/chaining/rt_sl_impl.h >Xinclude/seqan/chaining/score_chain.h >Xinclude/seqan/chaining/score_chain_sop.h >Xinclude/seqan/chaining/score_manhattan.h >Xinclude/seqan/chaining/score_zero.h >Xinclude/seqan/chaining/skip_base_element.h >Xinclude/seqan/chaining/skip_element.h >Xinclude/seqan/chaining/skip_list.h >Xinclude/seqan/chaining/skip_list_base.h >Xinclude/seqan/chaining/skip_list_dynamic.h >Xinclude/seqan/chaining/skip_list_impl.h >Xinclude/seqan/chaining/skip_list_iterator.h >Xinclude/seqan/chaining/skip_list_type.h >Xinclude/seqan/chaining/skip_pool_alloc.h >Xinclude/seqan/chaining/tree_chain.h >Xinclude/seqan/chaining/tree_chain_sop.h >Xinclude/seqan/chaining/tree_chain_utils.h >Xinclude/seqan/consensus.h >Xinclude/seqan/consensus/consensus_base.h >Xinclude/seqan/consensus/consensus_generated_forwards.h >Xinclude/seqan/consensus/consensus_library.h >Xinclude/seqan/consensus/consensus_realign.h >Xinclude/seqan/consensus/consensus_score.h >Xinclude/seqan/file.h >Xinclude/seqan/file/chunk_collector.h >Xinclude/seqan/file/cstream.h >Xinclude/seqan/file/file_array.h >Xinclude/seqan/file/file_base.h >Xinclude/seqan/file/file_cstyle.h >Xinclude/seqan/file/file_filereader.h >Xinclude/seqan/file/file_filereaderiterator.h >Xinclude/seqan/file/file_format.h >Xinclude/seqan/file/file_format_cgviz.h >Xinclude/seqan/file/file_format_embl.h >Xinclude/seqan/file/file_format_fasta.h >Xinclude/seqan/file/file_format_fasta_align.h >Xinclude/seqan/file/file_format_genbank.h >Xinclude/seqan/file/file_format_guess.h >Xinclude/seqan/file/file_format_mmap.h >Xinclude/seqan/file/file_format_raw.h >Xinclude/seqan/file/file_forwards.h >Xinclude/seqan/file/file_generated_forwards.h >Xinclude/seqan/file/file_page.h >Xinclude/seqan/file/file_page_raid0.h >Xinclude/seqan/file/meta.h >Xinclude/seqan/file/stream.h >Xinclude/seqan/file/stream_algorithms.h >Xinclude/seqan/file/string_external.h >Xinclude/seqan/file/string_mmap.h >Xinclude/seqan/find.h >Xinclude/seqan/find/find_abndm.h >Xinclude/seqan/find/find_ahocorasick.h >Xinclude/seqan/find/find_base.h >Xinclude/seqan/find/find_begin.h >Xinclude/seqan/find/find_bndm.h >Xinclude/seqan/find/find_bom.h >Xinclude/seqan/find/find_generated_forwards.h >Xinclude/seqan/find/find_hamming_simple.h >Xinclude/seqan/find/find_horspool.h >Xinclude/seqan/find/find_multi.h >Xinclude/seqan/find/find_multiple_bfam.h >Xinclude/seqan/find/find_multiple_shiftand.h >Xinclude/seqan/find/find_myers_ukkonen.h >Xinclude/seqan/find/find_pattern_base.h >Xinclude/seqan/find/find_pex.h >Xinclude/seqan/find/find_score.h >Xinclude/seqan/find/find_set_horspool.h >Xinclude/seqan/find/find_shiftand.h >Xinclude/seqan/find/find_shiftor.h >Xinclude/seqan/find/find_simple.h >Xinclude/seqan/find/find_wild_shiftand.h >Xinclude/seqan/find/find_wumanber.h >Xinclude/seqan/find2.h >Xinclude/seqan/find2/find2_generated_forwards.h >Xinclude/seqan/find2/find_approx_dpsearch.h >Xinclude/seqan/find2/find_approx_find_begin.h >Xinclude/seqan/find2/find_base.h >Xinclude/seqan/find2/find_exact_shiftand.h >Xinclude/seqan/find2/find_exact_simple.h >Xinclude/seqan/find2/find_finder_default.h >Xinclude/seqan/find2/find_hamming_simple.h >Xinclude/seqan/find2/find_multiple_exact_simple.h >Xinclude/seqan/find2/find_pattern_wild_shiftand.h >Xinclude/seqan/find_motif.h >Xinclude/seqan/find_motif/em_algorithm.h >Xinclude/seqan/find_motif/find_motif_base.h >Xinclude/seqan/find_motif/find_motif_epatternbranching.h >Xinclude/seqan/find_motif/find_motif_generated_forwards.h >Xinclude/seqan/find_motif/find_motif_pms1.h >Xinclude/seqan/find_motif/find_motif_pmsp.h >Xinclude/seqan/find_motif/find_motif_projection.h >Xinclude/seqan/find_motif/frequency_distribution.h >Xinclude/seqan/find_motif/profile.h >Xinclude/seqan/find_motif/pseudocount_base.h >Xinclude/seqan/find_motif/pseudocount_mode_c.h >Xinclude/seqan/find_motif/pseudocount_mode_p.h >Xinclude/seqan/find_motif/sequence_model_types.h >Xinclude/seqan/graph_algorithms.h >Xinclude/seqan/graph_algorithms/graph_algorithm.h >Xinclude/seqan/graph_algorithms/graph_algorithm_heap_tree.h >Xinclude/seqan/graph_algorithms/graph_algorithm_hmm.h >Xinclude/seqan/graph_algorithms/graph_algorithm_lis_his.h >Xinclude/seqan/graph_algorithms/graph_algorithms_generated_forwards.h >Xinclude/seqan/graph_align.h >Xinclude/seqan/graph_align/graph_align_banded_gotoh.h >Xinclude/seqan/graph_align/graph_align_banded_needleman_wunsch.h >Xinclude/seqan/graph_align/graph_align_banded_smith_waterman_clump.h >Xinclude/seqan/graph_align/graph_align_base.h >Xinclude/seqan/graph_align/graph_align_config.h >Xinclude/seqan/graph_align/graph_align_generated_forwards.h >Xinclude/seqan/graph_align/graph_align_gotoh.h >Xinclude/seqan/graph_align/graph_align_hirschberg.h >Xinclude/seqan/graph_align/graph_align_interface.h >Xinclude/seqan/graph_align/graph_align_needleman_wunsch.h >Xinclude/seqan/graph_align/graph_align_smith_waterman.h >Xinclude/seqan/graph_align/graph_align_smith_waterman_clump.h >Xinclude/seqan/graph_msa.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_base.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_distance.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_guidetree.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_io.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_kmer.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_library.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_msa.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_progressive.h >Xinclude/seqan/graph_msa/graph_align_tcoffee_refinement.h >Xinclude/seqan/graph_msa/graph_msa_generated_forwards.h >Xinclude/seqan/graph_types.h >Xinclude/seqan/graph_types/graph_base.h >Xinclude/seqan/graph_types/graph_drawing.h >Xinclude/seqan/graph_types/graph_edgestump.h >Xinclude/seqan/graph_types/graph_idmanager.h >Xinclude/seqan/graph_types/graph_impl_automaton.h >Xinclude/seqan/graph_types/graph_impl_directed.h >Xinclude/seqan/graph_types/graph_impl_fragment.h >Xinclude/seqan/graph_types/graph_impl_hmm.h >Xinclude/seqan/graph_types/graph_impl_oracle.h >Xinclude/seqan/graph_types/graph_impl_tree.h >Xinclude/seqan/graph_types/graph_impl_trie.h >Xinclude/seqan/graph_types/graph_impl_undirected.h >Xinclude/seqan/graph_types/graph_impl_wordgraph.h >Xinclude/seqan/graph_types/graph_interface.h >Xinclude/seqan/graph_types/graph_iterator.h >Xinclude/seqan/graph_types/graph_iterator_adjacency.h >Xinclude/seqan/graph_types/graph_iterator_bfs.h >Xinclude/seqan/graph_types/graph_iterator_dfs.h >Xinclude/seqan/graph_types/graph_iterator_edge.h >Xinclude/seqan/graph_types/graph_iterator_outedge.h >Xinclude/seqan/graph_types/graph_iterator_vertex.h >Xinclude/seqan/graph_types/graph_property.h >Xinclude/seqan/graph_types/graph_types_generated_forwards.h >Xinclude/seqan/graph_types/graph_utility_parsing.h >Xinclude/seqan/index.h >Xinclude/seqan/index/find_index.h >Xinclude/seqan/index/find_index_approx.h >Xinclude/seqan/index/find_index_esa.h >Xinclude/seqan/index/find_index_qgram.h >Xinclude/seqan/index/find_quasar.h >Xinclude/seqan/index/find_swift.h >Xinclude/seqan/index/index_base.h >Xinclude/seqan/index/index_bwt.h >Xinclude/seqan/index/index_childtab.h >Xinclude/seqan/index/index_dfi.h >Xinclude/seqan/index/index_esa_algs.h >Xinclude/seqan/index/index_esa_algs_multi.h >Xinclude/seqan/index/index_esa_base.h >Xinclude/seqan/index/index_esa_drawing.h >Xinclude/seqan/index/index_esa_stree.h >Xinclude/seqan/index/index_generated_forwards.h >Xinclude/seqan/index/index_lcp.h >Xinclude/seqan/index/index_lcp_tree.h >Xinclude/seqan/index/index_manual_forwards.h >Xinclude/seqan/index/index_pizzachili.h >Xinclude/seqan/index/index_pizzachili_find.h >Xinclude/seqan/index/index_pizzachili_string.h >Xinclude/seqan/index/index_qgram.h >Xinclude/seqan/index/index_qgram_openaddressing.h >Xinclude/seqan/index/index_sa_btree.h >Xinclude/seqan/index/index_sa_bwtwalk.h >Xinclude/seqan/index/index_sa_lss.h >Xinclude/seqan/index/index_sa_mm.h >Xinclude/seqan/index/index_sa_qsort.h >Xinclude/seqan/index/index_shawarma.h >Xinclude/seqan/index/index_shims.h >Xinclude/seqan/index/index_skew3.h >Xinclude/seqan/index/index_skew7.h >Xinclude/seqan/index/index_skew7_multi.h >Xinclude/seqan/index/index_wotd.h >Xinclude/seqan/index/pipe_merger3.h >Xinclude/seqan/index/pipe_merger7.h >Xinclude/seqan/index/pizzachili_api.h >Xinclude/seqan/index/pump_extender3.h >Xinclude/seqan/index/pump_extender7.h >Xinclude/seqan/index/pump_lcp_core.h >Xinclude/seqan/index/pump_separator7.h >Xinclude/seqan/index/radix.h >Xinclude/seqan/index/repeat_base.h >Xinclude/seqan/index/shape_base.h >Xinclude/seqan/index/shape_gapped.h >Xinclude/seqan/index/shape_onegapped.h >Xinclude/seqan/index/shape_predefined.h >Xinclude/seqan/index/shape_threshold.h >Xinclude/seqan/map.h >Xinclude/seqan/map/map_adapter_stl.h >Xinclude/seqan/map/map_base.h >Xinclude/seqan/map/map_chooser.h >Xinclude/seqan/map/map_generated_forwards.h >Xinclude/seqan/map/map_skiplist.h >Xinclude/seqan/map/map_vector.h >Xinclude/seqan/map/sumlist.h >Xinclude/seqan/map/sumlist_mini.h >Xinclude/seqan/map/sumlist_skip.h >Xinclude/seqan/misc/edit_environment.h >Xinclude/seqan/misc/misc_base.h >Xinclude/seqan/misc/misc_cmdparser.h >Xinclude/seqan/misc/misc_dequeue.h >Xinclude/seqan/misc/misc_generated_forwards.h >Xinclude/seqan/misc/misc_interval_tree.h >Xinclude/seqan/misc/misc_long_word.h >Xinclude/seqan/misc/misc_map.h >Xinclude/seqan/misc/misc_parsing.h >Xinclude/seqan/misc/misc_random.h >Xinclude/seqan/misc/misc_set.h >Xinclude/seqan/misc/misc_svg.h >Xinclude/seqan/misc/priority_type_base.h >Xinclude/seqan/misc/priority_type_heap.h >Xinclude/seqan/modifier.h >Xinclude/seqan/modifier/modifier_alphabet.h >Xinclude/seqan/modifier/modifier_alphabet_expansion.h >Xinclude/seqan/modifier/modifier_functors.h >Xinclude/seqan/modifier/modifier_generated_forwards.h >Xinclude/seqan/modifier/modifier_iterator.h >Xinclude/seqan/modifier/modifier_reverse.h >Xinclude/seqan/modifier/modifier_shortcuts.h >Xinclude/seqan/modifier/modifier_string.h >Xinclude/seqan/modifier/modifier_view.h >Xinclude/seqan/parallel.h >Xinclude/seqan/parallel/parallel_atomic_misc.h >Xinclude/seqan/parallel/parallel_atomic_primitives.h >Xinclude/seqan/parallel/parallel_generated_forwards.h >Xinclude/seqan/parallel/parallel_macros.h >Xinclude/seqan/pipe.h >Xinclude/seqan/pipe/pipe_base.h >Xinclude/seqan/pipe/pipe_caster.h >Xinclude/seqan/pipe/pipe_counter.h >Xinclude/seqan/pipe/pipe_echoer.h >Xinclude/seqan/pipe/pipe_edit_environment.h >Xinclude/seqan/pipe/pipe_filter.h >Xinclude/seqan/pipe/pipe_generated_forwards.h >Xinclude/seqan/pipe/pipe_iterator.h >Xinclude/seqan/pipe/pipe_joiner.h >Xinclude/seqan/pipe/pipe_namer.h >Xinclude/seqan/pipe/pipe_sampler.h 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>Xshare/seqan/gapped_params/results_N19_H.dat >Xshare/seqan/gapped_params/results_N19_L.dat >Xshare/seqan/gapped_params/results_N20_H.dat >Xshare/seqan/gapped_params/results_N20_L.dat >Xshare/seqan/gapped_params/results_N21_H.dat >Xshare/seqan/gapped_params/results_N21_L.dat >Xshare/seqan/gapped_params/results_N22_H.dat >Xshare/seqan/gapped_params/results_N22_L.dat >Xshare/seqan/gapped_params/results_N23_H.dat >Xshare/seqan/gapped_params/results_N23_L.dat >Xshare/seqan/gapped_params/results_N24_H.dat >Xshare/seqan/gapped_params/results_N24_L.dat >Xshare/seqan/gapped_params/results_N25_H.dat >Xshare/seqan/gapped_params/results_N25_L.dat >Xshare/seqan/gapped_params/results_N26_H.dat >Xshare/seqan/gapped_params/results_N26_L.dat >Xshare/seqan/gapped_params/results_N27_H.dat >Xshare/seqan/gapped_params/results_N27_L.dat >Xshare/seqan/gapped_params/results_N28_H.dat >Xshare/seqan/gapped_params/results_N28_L.dat >Xshare/seqan/gapped_params/results_N29_H.dat >Xshare/seqan/gapped_params/results_N29_L.dat >Xshare/seqan/gapped_params/results_N30_H.dat >Xshare/seqan/gapped_params/results_N30_L.dat >Xshare/seqan/gapped_params/results_N31_H.dat >Xshare/seqan/gapped_params/results_N31_L.dat >Xshare/seqan/gapped_params/results_N32_H.dat >Xshare/seqan/gapped_params/results_N32_L.dat >Xshare/seqan/gapped_params/results_N33_H.dat >Xshare/seqan/gapped_params/results_N33_L.dat >Xshare/seqan/gapped_params/results_N34_H.dat >Xshare/seqan/gapped_params/results_N34_L.dat >Xshare/seqan/gapped_params/results_N35_H.dat >Xshare/seqan/gapped_params/results_N35_L.dat >Xshare/seqan/gapped_params/results_N36_H.dat >Xshare/seqan/gapped_params/results_N36_L.dat >Xshare/seqan/gapped_params/results_N37_H.dat >Xshare/seqan/gapped_params/results_N37_L.dat >Xshare/seqan/gapped_params/results_N38_H.dat >Xshare/seqan/gapped_params/results_N38_L.dat >Xshare/seqan/gapped_params/results_N39_H.dat >Xshare/seqan/gapped_params/results_N39_L.dat >Xshare/seqan/gapped_params/results_N40_H.dat >Xshare/seqan/gapped_params/results_N40_L.dat >Xshare/seqan/gapped_params/results_N41_H.dat >Xshare/seqan/gapped_params/results_N41_L.dat >Xshare/seqan/gapped_params/results_N42_H.dat >Xshare/seqan/gapped_params/results_N42_L.dat >Xshare/seqan/gapped_params/results_N43_H.dat >Xshare/seqan/gapped_params/results_N43_L.dat >Xshare/seqan/gapped_params/results_N44_H.dat >Xshare/seqan/gapped_params/results_N44_L.dat >Xshare/seqan/gapped_params/results_N45_H.dat >Xshare/seqan/gapped_params/results_N45_L.dat >Xshare/seqan/gapped_params/results_N46_H.dat >Xshare/seqan/gapped_params/results_N46_L.dat >Xshare/seqan/gapped_params/results_N47_H.dat >Xshare/seqan/gapped_params/results_N47_L.dat >Xshare/seqan/gapped_params/results_N48_H.dat >Xshare/seqan/gapped_params/results_N48_L.dat >Xshare/seqan/gapped_params/results_N49_H.dat >Xshare/seqan/gapped_params/results_N49_L.dat >Xshare/seqan/gapped_params/results_N50_H.dat >Xshare/seqan/gapped_params/results_N50_L.dat >Xshare/seqan/gapped_params/results_N51_H.dat >Xshare/seqan/gapped_params/results_N51_L.dat >Xshare/seqan/gapped_params/results_N52_H.dat >Xshare/seqan/gapped_params/results_N52_L.dat >Xshare/seqan/gapped_params/results_N53_H.dat >Xshare/seqan/gapped_params/results_N53_L.dat >Xshare/seqan/gapped_params/results_N54_H.dat >Xshare/seqan/gapped_params/results_N54_L.dat >Xshare/seqan/gapped_params/results_N55_H.dat >Xshare/seqan/gapped_params/results_N55_L.dat >Xshare/seqan/gapped_params/results_N56_H.dat >Xshare/seqan/gapped_params/results_N56_L.dat >Xshare/seqan/gapped_params/results_N57_H.dat >Xshare/seqan/gapped_params/results_N57_L.dat >Xshare/seqan/gapped_params/results_N58_H.dat >Xshare/seqan/gapped_params/results_N58_L.dat >Xshare/seqan/gapped_params/results_N59_H.dat >Xshare/seqan/gapped_params/results_N59_L.dat >Xshare/seqan/gapped_params/results_N60_H.dat >Xshare/seqan/gapped_params/results_N60_L.dat >Xshare/seqan/gapped_params/results_N61_H.dat >Xshare/seqan/gapped_params/results_N61_L.dat >Xshare/seqan/gapped_params/results_N62_H.dat >Xshare/seqan/gapped_params/results_N62_L.dat >Xshare/seqan/gapped_params/results_N63_H.dat >Xshare/seqan/gapped_params/results_N63_L.dat >Xshare/seqan/gapped_params/results_N64_H.dat >Xshare/seqan/gapped_params/results_N64_L.dat >Xshare/seqan/gapped_params/results_N65_H.dat >Xshare/seqan/gapped_params/results_N65_L.dat >Xshare/seqan/gapped_params/results_N66_H.dat >Xshare/seqan/gapped_params/results_N67_H.dat >Xshare/seqan/gapped_params/results_N68_H.dat >Xshare/seqan/gapped_params/results_N69_H.dat >Xshare/seqan/gapped_params/results_N70_H.dat >Xshare/seqan/gapped_params/results_N71_H.dat >Xshare/seqan/gapped_params/results_N72_H.dat >Xshare/seqan/gapped_params/results_N73_H.dat >Xshare/seqan/gapped_params/results_N74_H.dat >Xshare/seqan/gapped_params/results_N75_H.dat >X@dirrm share/seqan/gapped_params >X@dirrm share/seqan/docs >X@dirrm share/seqan >X@dirrm include/seqan/system >X@dirrm include/seqan/store >X@dirrm include/seqan/statistics >X@dirrm include/seqan/sequence_journaled >X@dirrm include/seqan/sequence >X@dirrm include/seqan/seeds2 >X@dirrm include/seqan/seeds >X@dirrm include/seqan/score >X@dirrm include/seqan/refinement >X@dirrm include/seqan/random >X@dirrm include/seqan/platform >X@dirrm include/seqan/pipe >X@dirrm include/seqan/parallel >X@dirrm include/seqan/modifier >X@dirrm include/seqan/misc >X@dirrm include/seqan/map >X@dirrm include/seqan/index >X@dirrm include/seqan/graph_types >X@dirrm include/seqan/graph_msa >X@dirrm include/seqan/graph_align >X@dirrm include/seqan/graph_algorithms >X@dirrm include/seqan/find_motif >X@dirrm include/seqan/find2 >X@dirrm include/seqan/find >X@dirrm include/seqan/file >X@dirrm include/seqan/consensus >X@dirrm include/seqan/chaining >X@dirrm include/seqan/blast >X@dirrm include/seqan/basic >X@dirrm include/seqan/align >X@dirrm include/seqan >c2d0b767f4af5a77aa847e7b4e826c70 >echo c - seqan/files >mkdir -p seqan/files > /dev/null 2>&1 >echo x - seqan/files/patch-cmake-apps-CMakeLists.txt >sed 's/^X//' >seqan/files/patch-cmake-apps-CMakeLists.txt << 'e8f5f2ec626c5ad0f06a47678d4bb557' >X--- cmake/apps/CMakeLists.txt.orig 2012-05-04 11:12:35.000000000 +0800 >X+++ cmake/apps/CMakeLists.txt 2012-05-04 11:23:26.000000000 +0800 >X@@ -108,4 +108,4 @@ >X >X # Install RazerS gapped parameters. >X install(DIRECTORY ${SEQAN_LIBRARY}/apps/razers2/gapped_params >X- DESTINATION bin) >X+ DESTINATION share/seqan) >e8f5f2ec626c5ad0f06a47678d4bb557 >echo x - seqan/files/patch-cmake-CMakeLists.txt >sed 's/^X//' >seqan/files/patch-cmake-CMakeLists.txt << '86b1e5cdb1549c7bd1d49b69e78ae2a6' >X--- cmake/CMakeLists.txt.orig 2012-05-04 12:56:23.000000000 +0800 >X+++ cmake/CMakeLists.txt 2012-05-04 13:00:03.000000000 +0800 >X@@ -146,6 +146,10 @@ >X COMPONENT headers) >X #message("install(FILES ${HEADER} RENAME seqan${NEW_PATH} DESTINATION include COMPONENT headers)") >X endforeach() >X+#seqan.h >X+install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/../seqan.h >X+ DESTINATION include >X+ COMPONENT headers) >X >X ################################################################################ >X # Set Compiler Flags >86b1e5cdb1549c7bd1d49b69e78ae2a6 >echo x - seqan/pkg-message >sed 's/^X//' >seqan/pkg-message << 'f29e7b3a22803482eada786d6c2d408d' >Xgapped_params for Razers2 have been installed to >X /usr/local/share/seqan/gapped_params >X >XIf you require these, make sure to set the correct >Xpath with --param-dir as Razers2 will not pick them >Xup automatically. >f29e7b3a22803482eada786d6c2d408d >exit
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