Attachment 124170 Details for Bug 167651 – file.txt

file.txt

file.txt (text/plain), 45.15 KB, created by Jason W. Bacon on 2012-05-06 20:40:00 UTC

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Creator: Jason W. Bacon

Created: 2012-05-06 20:40:00 UTC

Size: 45.15 KB

patch

obsolete

>===> Generating patch
>===> Viewing diff with more
>diff -ruN --exclude=CVS /usr/ports/science/afni/Makefile /home/bacon/Prog/Ports/ports/science/afni/Makefile
>--- /usr/ports/science/afni/Makefile	2011-05-02 07:44:49.000000000 -0500
>+++ /home/bacon/Prog/Ports/ports/science/afni/Makefile	2012-05-06 13:59:22.000000000 -0500
>@@ -15,11 +15,10 @@
> # you can download the latest sources and build manually.
> 
> PORTNAME=	afni
>-PORTVERSION=	2008.01.02.1043
>-PORTREVISION=	6
>+PORTVERSION=	2012.04.17.2129
> CATEGORIES=	science biology graphics
>-MASTER_SITES=	http://www.neuro.mcw.edu/Ports/distfiles/AFNI/${PORTVERSION}/ \
>-		http://afni.nimh.nih.gov/pub/dist/tgz/
>+MASTER_SITES=	http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
>+		http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
> DISTFILES=	afni_src.tgz afni.1 3dClustBust.c \
> 		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.5-July3107.tgz
> DIST_SUBDIR=	AFNI-${PORTVERSION}
>@@ -28,6 +27,8 @@
> MAINTAINER=	jwbacon@tds.net
> COMMENT=	Advanced Functional Neuro Imaging
> 
>+LIB_DEPENDS=	Xm:${PORTSDIR}/x11-toolkits/open-motif \
>+		R:${PORTSDIR}/math/R
> RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
> 		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
> 		whirlgif:${PORTSDIR}/graphics/whirlgif \
>@@ -46,9 +47,9 @@
> USE_GMAKE=	yes
> USE_ICONV=	yes
> USE_MOTIF=	yes
>+MAKE_ENV=	CC="${CC}"
> 
> WRKSRC=		${WRKDIR}/afni_src
>-MAKEFILE=	Makefile.FreeBSD_PORT
> ALL_TARGET=	vastness suma
> 
> ###########################################################################
>@@ -56,6 +57,8 @@
> 
> MAN1=		afni.1
> 
>+SUB_FILES=	pkg-message afni.cshrc afni.profile
>+
> INSTALL_WRKSRC=	${WRKSRC}/BSD
> STAGE=		${WRKSRC}/stage
> 
>@@ -68,16 +71,15 @@
> 		SUMA/SUMA_Load_Surface_Object.c \
> 		SUMA/SUMA_MiscFunc.c \
> 		SUMA/SUMA_ParseCommands.c \
>-		SUMA/SUMA_StripPath.c \
> 		SUMA/GLUT/libglut/glut_event.c \
> 		SUMA/SUMA_Surface_IO.c
> 
> post-extract:
>-	@${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
>+	@${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}/Makefile
> .for f in ${X11R6_FILES}
> 	@${REINPLACE_CMD} -e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
> .endfor
>-	@${REINPLACE_CMD} -e 's|AFNI_2007_05_29_1644|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
>+	@${REINPLACE_CMD} -E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
> 	@${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
> 	@${CP} ${DISTDIR}/${DIST_SUBDIR}/3dClustBust.c ${WRKSRC}
> 	@${REINPLACE_CMD} "s|%%PREFIX%%|${PREFIX}|g" ${WRKDIR}/afni.1
>@@ -95,15 +97,16 @@
> 	${MV}	${INSTALL_WRKSRC}/*.a \
> 		${INSTALL_WRKSRC}/*.so \
> 		${STAGE}/lib
>-	${MV}	${INSTALL_WRKSRC}/*.jpg \
>-		${INSTALL_WRKSRC}/*.txt \
>+	${MV}	${INSTALL_WRKSRC}/funstuff \
> 		${INSTALL_WRKSRC}/AFNI.*rc \
>+		${INSTALL_WRKSRC}/afnigui* \
> 		${STAGE}/share
> 	${MV}	${INSTALL_WRKSRC}/*.h \
> 		${STAGE}/include
> 	${MV}	${INSTALL_WRKSRC}/README* \
> 		${STAGE}/doc
> 	${MV}	${INSTALL_WRKSRC}/abut ${INSTALL_WRKSRC}/afni_abut
>+	${MV}	${INSTALL_WRKSRC}/qhull ${INSTALL_WRKSRC}/afni_qhull
> 	for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
> 		${MV} $${binary} ${STAGE}/bin ; \
> 	done
>@@ -114,18 +117,20 @@
> 	${MKDIR} ${DATADIR} ${PREFIX}/lib/afni ${PREFIX}/include/afni
> 	${INSTALL_DATA} ${STAGE}/lib/* ${PREFIX}/lib/afni
> 	${INSTALL_DATA} ${STAGE}/include/* ${PREFIX}/include/afni
>-	${INSTALL_DATA} ${STAGE}/share/* ${DATADIR}
>+	${CP} -R ${STAGE}/share/* ${DATADIR}
> 	${INSTALL_PROGRAM} ${STAGE}/bin/* ${PREFIX}/bin
> 	${INSTALL_SCRIPT} ${STAGE}/scripts/* ${PREFIX}/bin
> 	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
> 	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.5-July3107/* ${DATADIR}
> 	${INSTALL_MAN} ${WRKDIR}/afni.1 ${MAN1PREFIX}/man/man1
> .if !defined(NOPORTDOCS)
>-	${MKDIR} ${DOCSDIR}
>+	${MKDIR} ${DOCSDIR} ${PREFIX}/etc/mri
> 	${INSTALL_DATA} ${STAGE}/doc/* ${DOCSDIR}
>+	${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
>+		${PREFIX}/etc/mri
> .endif
> 
> post-install:
>-	@${CAT} pkg-message
>+	@${CAT} ${WRKDIR}/pkg-message
> 
> .include <bsd.port.post.mk>
>diff -ruN --exclude=CVS /usr/ports/science/afni/distinfo /home/bacon/Prog/Ports/ports/science/afni/distinfo
>--- /usr/ports/science/afni/distinfo	2011-07-03 08:22:11.000000000 -0500
>+++ /home/bacon/Prog/Ports/ports/science/afni/distinfo	2012-05-06 14:08:17.000000000 -0500
>@@ -1,12 +1,12 @@
>-SHA256 (AFNI-2008.01.02.1043/afni_src.tgz) = 39d190c705ce93e8794500de11c367e0ba0ea6600baac34cdd23cdd2400d18fd
>-SIZE (AFNI-2008.01.02.1043/afni_src.tgz) = 12248881
>-SHA256 (AFNI-2008.01.02.1043/afni.1) = f134d1f869b1dfd618c61e58fd24b9c4dcfea9c25bc5b1c26dbbb141719cd6f8
>-SIZE (AFNI-2008.01.02.1043/afni.1) = 1667
>-SHA256 (AFNI-2008.01.02.1043/3dClustBust.c) = 2ca07ff08acc41d7c8895d06ae9effa2c6058aada45fc5381b63a726600dded2
>-SIZE (AFNI-2008.01.02.1043/3dClustBust.c) = 106517
>-SHA256 (AFNI-2008.01.02.1043/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
>-SIZE (AFNI-2008.01.02.1043/TTatlas+tlrc.BRIK.gz) = 159912
>-SHA256 (AFNI-2008.01.02.1043/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
>-SIZE (AFNI-2008.01.02.1043/TTatlas+tlrc.HEAD) = 1750
>-SHA256 (AFNI-2008.01.02.1043/CA_EZ_v1.5-July3107.tgz) = 4300ec3e94b7dfd43f70b3f321f8aa290bd9f6e6420a414f251dbd790df8af02
>-SIZE (AFNI-2008.01.02.1043/CA_EZ_v1.5-July3107.tgz) = 2654150
>+SHA256 (AFNI-2012.04.17.2129/afni_src.tgz) = 815ff58ef10f2174211e507ac4d527a0025f31e0a54976f5915f8ff3a0a95209
>+SIZE (AFNI-2012.04.17.2129/afni_src.tgz) = 18635542
>+SHA256 (AFNI-2012.04.17.2129/afni.1) = f134d1f869b1dfd618c61e58fd24b9c4dcfea9c25bc5b1c26dbbb141719cd6f8
>+SIZE (AFNI-2012.04.17.2129/afni.1) = 1667
>+SHA256 (AFNI-2012.04.17.2129/3dClustBust.c) = 2ca07ff08acc41d7c8895d06ae9effa2c6058aada45fc5381b63a726600dded2
>+SIZE (AFNI-2012.04.17.2129/3dClustBust.c) = 106517
>+SHA256 (AFNI-2012.04.17.2129/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
>+SIZE (AFNI-2012.04.17.2129/TTatlas+tlrc.BRIK.gz) = 159912
>+SHA256 (AFNI-2012.04.17.2129/TTatlas+tlrc.HEAD) = 57262785bcc87ef5aa0f0cddc82d67c15e799ac9e2e12127e8eeb4d348ccf55e
>+SIZE (AFNI-2012.04.17.2129/TTatlas+tlrc.HEAD) = 1830
>+SHA256 (AFNI-2012.04.17.2129/CA_EZ_v1.5-July3107.tgz) = 4300ec3e94b7dfd43f70b3f321f8aa290bd9f6e6420a414f251dbd790df8af02
>+SIZE (AFNI-2012.04.17.2129/CA_EZ_v1.5-July3107.tgz) = 2654150
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/Makefile.FreeBSD_PORT /home/bacon/Prog/Ports/ports/science/afni/files/Makefile.FreeBSD_PORT
>--- /usr/ports/science/afni/files/Makefile.FreeBSD_PORT	2008-04-19 12:53:16.000000000 -0500
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/Makefile.FreeBSD_PORT	2012-04-18 12:49:11.000000000 -0500
>@@ -25,7 +25,7 @@
> #           and under FreeBSD 5.1.
> #
> #   Note:   The SUMA build process (as of Aug, 2003) requires GNU make,
>-#           which is /usr/local/bin/gmake on BSD systems.  
>+#           which is ${LOCALBASE}/bin/gmake on BSD systems.  
> #           Be sure the MAKE macro below is set to gmake.
> #
> #   Note:   Compilation of netcdf-3.5.0 may fail due to m4's lack of
>@@ -61,16 +61,17 @@
> CCMIN  = ${CC}
> CCD    = ${CC} ${CCDEBS}
> CCSVD  = ${CC} -O0
>+CCOLD  = ${CC}
> 
>-IFLAGS = -I. -I${LOCALBASE}/include -I/usr/local/include
>-LFLAGS = -s -L. -L${LOCALBASE}/lib
>+IFLAGS = -I. -I${X11BASE}/include -I${LOCALBASE}/include
>+LFLAGS = -s -L. -L${X11BASE}/lib -L${LOCALBASE}/lib
> 
> MAKE   = gmake
> 
> PLUGIN_SUFFIX = so
> PLUGIN_LFLAGS = -shared
> PLUGIN_CC     = ${CC}
>-PLFLAGS       = -s -rdynamic -L. -L${LOCALBASE}/lib
>+PLFLAGS       = -s -rdynamic -L. -L${X11BASE}/lib -L${LOCALBASE}/lib
> 
> AR     = /usr/bin/ar
> RANLIB = /usr/bin/ranlib
>@@ -90,12 +91,12 @@
> 
> # for dynamic linking
> 
>-LLIBS  = -lmri -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm $(LZLIB)
>+LLIBS  = -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm $(LZLIB)
> 
> # vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv
> # For suma (NO STATIC LINKING OF GL libs)
>-SUMA_INCLUDE_PATH = -I${LOCALBASE}/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src 
>-SUMA_LINK_PATH = -L/usr/lib -L${LOCALBASE}/lib -L../
>+SUMA_INCLUDE_PATH = -I${X11BASE}/include -I${LOCALBASE}/include -I./ -I../ -I../niml/ -Igts/src 
>+SUMA_LINK_PATH = -L/usr/lib -L${X11BASE}/lib -L${LOCALBASE}/lib -L../
> #use -lGLw if you have libGLw.a or libGLw.so* or 
> #  -lMesaGLw if you have Mesa's version (libMesaGLw*) of libGLw
> SUMA_LINK_LIB = -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm $(LZLIB)
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/afni.cshrc.in /home/bacon/Prog/Ports/ports/science/afni/files/afni.cshrc.in
>--- /usr/ports/science/afni/files/afni.cshrc.in	1969-12-31 18:00:00.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/afni.cshrc.in	2008-01-30 14:26:33.000000000 -0600
>@@ -0,0 +1,2 @@
>+setenv AFNI_PLUGINPATH %%PREFIX%%/lib/afni:%%DATADIR%%
>+setenv AFNI_GLOBAL_SESSION %%DATADIR%%
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/afni.profile.in /home/bacon/Prog/Ports/ports/science/afni/files/afni.profile.in
>--- /usr/ports/science/afni/files/afni.profile.in	1969-12-31 18:00:00.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/afni.profile.in	2008-01-30 14:27:02.000000000 -0600
>@@ -0,0 +1,4 @@
>+AFNI_PLUGINPATH=%%PREFIX%%/lib/afni:%%DATADIR%%
>+export AFNI_PLUGINPATH
>+AFNI_GLOBAL_SESSION=%%DATADIR%%
>+export AFNI_GLOBAL_SESSION
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/patch-Makefile.INCLUDE /home/bacon/Prog/Ports/ports/science/afni/files/patch-Makefile.INCLUDE
>--- /usr/ports/science/afni/files/patch-Makefile.INCLUDE	2008-01-28 10:42:02.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/patch-Makefile.INCLUDE	2012-04-18 13:43:43.000000000 -0500
>@@ -1,21 +1,21 @@
>---- Makefile.INCLUDE.orig	Thu Jun  7 13:40:04 2007
>-+++ Makefile.INCLUDE	Thu Aug 30 14:12:08 2007
>-@@ -41,7 +41,7 @@
>+--- Makefile.INCLUDE.orig	2012-04-17 15:56:21.000000000 -0500
>++++ Makefile.INCLUDE	2012-04-18 13:39:29.000000000 -0500
>+@@ -48,7 +48,7 @@
>  ## AFNI package, but included because they are useful.  Some of
>  ## them are Open Source programs, not from the AFNI group at all.
>  
>--EXTRAS   = cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv $(EXPROGS)
>+-EXTRAS   = cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv mycat $(EXPROGS)
> +EXTRAS   = myget Xphace rmz aiv 3dClustBust $(EXPROGS)
>  
>  # mpegtoppm in above list
>  
>-@@ -234,6 +234,9 @@
>- 
>+@@ -282,6 +282,9 @@
>  3dbuc2fim:3dbuc2fim.o
>  	$(CC) -o 3dbuc2fim 3dbuc2fim.o $(LFLAGS) $(LLIBS)
>-+
>+ 
> +3dClustBust:3dClustBust.c
> +	$(CC) -o 3dClustBust 3dClustBust.c $(INFLAGS) $(LFLAGS) $(LLIBS)
>- 
>++
>  mritopgm:mritopgm.c
>  	$(CC) -o mritopgm mritopgm.c $(INFLAGS) $(LFLAGS) $(LLIBS)
>+ 
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/patch-misc_math.c /home/bacon/Prog/Ports/ports/science/afni/files/patch-misc_math.c
>--- /usr/ports/science/afni/files/patch-misc_math.c	1969-12-31 18:00:00.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/patch-misc_math.c	2012-04-18 13:43:43.000000000 -0500
>@@ -0,0 +1,16 @@
>+--- misc_math.c.orig	2012-04-18 13:42:55.000000000 -0500
>++++ misc_math.c	2012-04-18 13:43:41.000000000 -0500
>+@@ -1,6 +1,13 @@
>+ 
>++/* For older libm */
>++double log2(double n)
>++{
>++    return log(n) / log(2.0);
>++}
>++
>+ /* move from Deconvolve.c into libmri.a         21 Jun 2010 [rickr] */
>+ 
>++
>+ double legendre( double x , int m )   /* Legendre polynomials over [-1,1] */
>+ {
>+    if( m < 0 ) return 1.0 ;    /* bad input */
>diff -ruN --exclude=CVS /usr/ports/science/afni/files/pkg-message.in /home/bacon/Prog/Ports/ports/science/afni/files/pkg-message.in
>--- /usr/ports/science/afni/files/pkg-message.in	1969-12-31 18:00:00.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/files/pkg-message.in	2012-04-18 11:36:29.000000000 -0500
>@@ -0,0 +1,28 @@
>+=============================================================================
>+For quick info, run "man afni".
>+
>+For AFNI configuration and usage, please visit the AFNI WEB site at 
>+
>+http://afni.nimh.nih.gov.
>+
>+---
>+
>+SUMA requires the nVidia graphics driver (x11/nvidia-driver*)
>+or DRI (graphics/dri).
>+
>+---
>+
>+For large 3dDeconvolve analyses, you may need to increase the shared
>+memory limit on your system.
>+
>+---
>+
>+The program "abut" has been renamed "afni_abut" to resolve a collision
>+with the unixstat port.
>+
>+---
>+
>+AFNI_PLUGIN_PATH should be set to %%PREFIX%%/lib/afni:%%DATADIR%%
>+AFNI_GLOBAL_SESSION should be set to %%DATADIR%%.
>+
>+=============================================================================
>diff -ruN --exclude=CVS /usr/ports/science/afni/pkg-descr /home/bacon/Prog/Ports/ports/science/afni/pkg-descr
>--- /usr/ports/science/afni/pkg-descr	2011-10-24 04:10:44.000000000 -0500
>+++ /home/bacon/Prog/Ports/ports/science/afni/pkg-descr	2012-05-06 14:36:52.000000000 -0500
>@@ -2,4 +2,4 @@
> a tool for analyzing 3 dimensional images, especially functional MRI
> images used in brain mapping research.
> 
>-WWW: http://www.neuro.mcw.edu/Ports
>+WWW:	http://afni.nimh.nih.gov/afni/
>diff -ruN --exclude=CVS /usr/ports/science/afni/pkg-message /home/bacon/Prog/Ports/ports/science/afni/pkg-message
>--- /usr/ports/science/afni/pkg-message	2009-06-19 15:06:30.000000000 -0500
>+++ /home/bacon/Prog/Ports/ports/science/afni/pkg-message	1969-12-31 18:00:00.000000000 -0600
>@@ -1,22 +0,0 @@
>-=============================================================================
>-Run "man afni" for information on setting up your afni environment.
>-
>-For questions or comments regarding the FreeBSD port, please contact the
>-port maintainer: 
>-
>-jwbacon@tds.net
>-
>-For AFNI configuration and usage, please visit the AFNI WEB site at 
>-
>-http://afni.nimh.nih.gov.
>-
>-SUMA requires the nvidia graphics driver or DRI.
>-
>-For large 3dDeconvolve analyses, you may need to increase the shared
>-memory limit on your system.  For instructions, visit
>-
>-http://www.neuro.mcw.edu/~bacon/Ports/FreeBSD/shared_mem.html
>-
>-The program "abut" has been renamed "afni_abut" to resolve a collision
>-with the unixstat port.
>-=============================================================================
>diff -ruN --exclude=CVS /usr/ports/science/afni/pkg-plist /home/bacon/Prog/Ports/ports/science/afni/pkg-plist
>--- /usr/ports/science/afni/pkg-plist	2008-01-28 10:42:01.000000000 -0600
>+++ /home/bacon/Prog/Ports/ports/science/afni/pkg-plist	2012-05-06 13:32:46.000000000 -0500
>@@ -1,10 +1,23 @@
>+bin/1dAstrip
>+bin/1dBandpass
>+bin/1dBport
>+bin/1dCorrelate
> bin/1dFlagMotion
>+bin/1dGC.R
> bin/1dMarry
>+bin/1dRplot
>+bin/1dRplot.R
> bin/1dSEM
>+bin/1dSEMr.R
>+bin/1dSVAR.R
>+bin/1dTsort
>+bin/1dUpsample
>+bin/1d_tool.py
> bin/1dcat
> bin/1ddot
> bin/1deval
> bin/1dfft
>+bin/1dgenARMA11
> bin/1dgrayplot
> bin/1dmatcalc
> bin/1dnorm
>@@ -15,6 +28,7 @@
> bin/24swap
> bin/2dImReg
> bin/2swap
>+bin/3dABoverlap
> bin/3dAFNIto3D
> bin/3dAFNItoANALYZE
> bin/3dAFNItoMINC
>@@ -34,15 +48,20 @@
> bin/3dAutobox
> bin/3dAutomask
> bin/3dBRAIN_VOYAGERtoAFNI
>+bin/3dBandpass
>+bin/3dBlurInMask
> bin/3dBlurToFWHM
> bin/3dBrickStat
> bin/3dCM
> bin/3dCRUISEtoAFNI
> bin/3dClipLevel
> bin/3dClustBust
>+bin/3dClustSim
> bin/3dConvolve
>+bin/3dCountSpikes
> bin/3dDFT
> bin/3dDTeig
>+bin/3dDTtoDWI
> bin/3dDWItoDT
> bin/3dDeconvolve
> bin/3dDeconvolve_f
>@@ -50,32 +69,59 @@
> bin/3dDetrend
> bin/3dEmpty
> bin/3dEntropy
>+bin/3dErrtsCormat
> bin/3dExtrema
> bin/3dFDR
>+bin/3dFFT
> bin/3dFWHM
> bin/3dFWHMx
> bin/3dFourier
> bin/3dFriedman
>+bin/3dGC.R
>+bin/3dGenPriors
> bin/3dGetrow
>+bin/3dGroupInCorr
>+bin/3dICA.R
>+bin/3dICC.R
>+bin/3dICC_REML.R
> bin/3dIntracranial
> bin/3dInvFMRI
>+bin/3dKS.R
> bin/3dKruskalWallis
> bin/3dLME.R
> bin/3dLRflip
>+bin/3dLSS
> bin/3dLocalBistat
>+bin/3dLocalPV
>+bin/3dLocalSVD
> bin/3dLocalstat
>+bin/3dMEMA
>+bin/3dMEMA.R
> bin/3dMINCtoAFNI
> bin/3dMannWhitney
>+bin/3dMaskToASCII
> bin/3dMax
> bin/3dMean
> bin/3dMedianFilter
> bin/3dNLfim
>+bin/3dNormalityTest
> bin/3dNotes
>+bin/3dNwarpApply
>+bin/3dNwarpCalc
> bin/3dOverlap
> bin/3dPAR2AFNI.pl
>+bin/3dPeriodogram
>+bin/3dPolyfit
>+bin/3dREMLfit
> bin/3dROIstats
>+bin/3dRank
> bin/3dRegAna
>+bin/3dRetinoPhase
> bin/3dRowFillin
>+bin/3dSeg
>+bin/3dSetupGroupInCorr
>+bin/3dSignatures
>+bin/3dSignatures.R
> bin/3dSkullStrip
> bin/3dSpatNorm
> bin/3dStatClust
>@@ -85,8 +131,12 @@
> bin/3dTSgen
> bin/3dTagalign
> bin/3dTcat
>+bin/3dTcorr1D
>+bin/3dTcorrMap
> bin/3dTcorrelate
>+bin/3dTfitter
> bin/3dThreetoRGB
>+bin/3dTnorm
> bin/3dToutcount
> bin/3dTqual
> bin/3dTshift
>@@ -96,12 +146,14 @@
> bin/3dTwotoComplex
> bin/3dUndump
> bin/3dUniformize
>+bin/3dUpsample
> bin/3dVol2Surf
> bin/3dWarp
> bin/3dWarpDrive
> bin/3dWavelets
> bin/3dWilcoxon
> bin/3dWinsor
>+bin/3dXYZcat
> bin/3dZcat
> bin/3dZcutup
> bin/3dZeropad
>@@ -121,10 +173,14 @@
> bin/3dfim+
> bin/3dfractionize
> bin/3dhistog
>+bin/3dinfill
> bin/3dinfo
>+bin/3dkmeans
>+bin/3dmaskSVD
> bin/3dmaskave
> bin/3dmaskdump
> bin/3dmatcalc
>+bin/3dmatmult
> bin/3dmaxima
> bin/3dmerge
> bin/3dnewid
>@@ -139,51 +195,97 @@
> bin/3drotate
> bin/3dsvm
> bin/3dttest
>+bin/3dttest++
> bin/3dvolreg
> bin/4swap
>+bin/@1dDiffMag
> bin/@2dwarper
>+bin/@2dwarper.Allin
> bin/@4Daverage
>+bin/@ANATICOR
>+bin/@AddEdge
>+bin/@AfniEnv
> bin/@AfniOrient2RAImap
> bin/@AfniOrientSign
> bin/@Align_Centers
>+bin/@Atlasize
> bin/@Center_Distance
> bin/@CheckForAfniDset
> bin/@CommandGlobb
>+bin/@DO.examples
> bin/@DTI_studio_reposition
>+bin/@DeblankFileNames
>+bin/@DiceMetric
> bin/@DoPerRoi.py
> bin/@DriveAfni
> bin/@DriveSuma
>+bin/@ElectroGrid
>+bin/@FS_roi_label
>+bin/@FSlabel2dset
> bin/@FindAfniDsetPath
> bin/@FromRAI
>+bin/@FullPath
>+bin/@GetAfniBin
>+bin/@GetAfniDims
> bin/@GetAfniID
> bin/@GetAfniOrient
> bin/@GetAfniPrefix
>+bin/@GetAfniRes
> bin/@GetAfniView
>+bin/@Install_InstaCorr_Demo
> bin/@IsoMasks
>+bin/@MakeLabelTable
> bin/@NoExt
>+bin/@NoPound
>+bin/@NoisySkullStrip
> bin/@Purify_1D
>+bin/@Quiet_Talkers
>+bin/@ROI_Corr_Mat
>+bin/@R_funclist
> bin/@RenamePanga
>+bin/@Reorder
>+bin/@RetinoProc
> bin/@SUMA_AlignToExperiment
> bin/@SUMA_FSvolToBRIK
> bin/@SUMA_Make_Spec_Caret
> bin/@SUMA_Make_Spec_FS
> bin/@SUMA_Make_Spec_SF
>+bin/@ScaleVolume
>+bin/@ScriptCheck
>+bin/@Shift_Volume
>+bin/@ShowDynamicRange
>+bin/@Spharm.examples
> bin/@SurfSmooth.HEAT_07.examples
>+bin/@TimeDiff
> bin/@ToRAI
> bin/@UpdateAfni
> bin/@VolCenter
> bin/@align_partial_oblique
> bin/@auto_align
> bin/@auto_tlrc
>+bin/@build_afni_Xlib
>+bin/@clean_help_dir
> bin/@clip_volume
>+bin/@demo_prompt
> bin/@escape-
>+bin/@fast_roi
> bin/@fix_FSsphere
> bin/@float_fix
>+bin/@global_parse
>+bin/@help.AFNI
> bin/@isOblique
>+bin/@make_plug_diff
> bin/@make_stim_file
> bin/@np
> bin/@parse_afni_name
> bin/@parse_name
>+bin/@radial_correlate
>+bin/@statauxcode
>+bin/@update.afni.binaries
>+bin/AFNI_Batch_R
>+bin/AFNI_atlas_spaces.niml
>+bin/AFNIio.R
>+bin/AFNIplot.R
> bin/AlphaSim
> bin/AnalyzeTrace
> bin/CompareSurfaces
>@@ -194,13 +296,16 @@
> bin/DTIStudioFibertoSegments
> bin/Dimon
> bin/DriveSuma
>+bin/ExamineXmat
>+bin/ExamineXmat.R
> bin/FD2
> bin/FSread_annot
> bin/Ifile
>-bin/Imon
> bin/IsoSurface
>+bin/Level2.R
> bin/MakeColorMap
> bin/MapIcosahedron
>+bin/ParseName
> bin/ROI2dataset
> bin/ROIgrow
> bin/RSFgen
>@@ -209,13 +314,20 @@
> bin/SUMA_pixmap2eps
> bin/SampBias
> bin/ScaleToMap
>+bin/Signatures.R
>+bin/SpharmDeco
>+bin/SpharmReco
> bin/Surf2VolCoord
> bin/SurfClust
>+bin/SurfDist
> bin/SurfDsetInfo
>+bin/SurfExtrema
>+bin/SurfFWHM
> bin/SurfInfo
> bin/SurfMeasures
> bin/SurfPatch
> bin/SurfQual
>+bin/SurfRetinoMap
> bin/SurfSmooth
> bin/SurfToSurf
> bin/SurfaceMetrics
>@@ -225,11 +337,16 @@
> bin/afni
> bin/afni_abut
> bin/afni_base.py
>+bin/afni_history
> bin/afni_proc.py
>+bin/afni_qhull
> bin/afni_run_R
> bin/afni_util.py
> bin/afni_vcheck
>+bin/afni_xmat.py
> bin/aiv
>+bin/align_epi_anat.py
>+bin/apsearch
> bin/ask_me.py
> bin/byteorder
> bin/cat_matvec
>@@ -237,9 +354,14 @@
> bin/cdf
> bin/count
> bin/db_mod.py
>+bin/demo.fixed.niml.do
>+bin/demo.mobile.niml.do
> bin/dicom_hdr
>+bin/dicom_hinfo
> bin/dicom_to_raw
>+bin/eg_main_chrono.py
> bin/ent16
>+bin/fdrval
> bin/fftest
> bin/file_tool
> bin/fim2
>@@ -247,6 +369,14 @@
> bin/from3d
> bin/ftosh
> bin/ge_header
>+bin/gen_epi_review.py
>+bin/gen_group_command.py
>+bin/gen_ss_review_scripts.py
>+bin/gui_uber_align_test.py
>+bin/gui_uber_skel.py
>+bin/gui_uber_subj.py
>+bin/gui_uber_ttest.py
>+bin/gui_xmat.py
> bin/im2niml
> bin/imand
> bin/imaver
>@@ -261,53 +391,102 @@
> bin/imstat
> bin/imupsam
> bin/inspec
>-bin/io.R
>+bin/lib_RR_plot.py
>+bin/lib_afni1D.py
>+bin/lib_matplot.py
>+bin/lib_qt_gui.py
>+bin/lib_realtime.py
>+bin/lib_subjects.py
>+bin/lib_surf_clustsim.py
>+bin/lib_textdata.py
>+bin/lib_timing.py
>+bin/lib_uber_align.py
>+bin/lib_uber_skel.py
>+bin/lib_uber_subject.py
>+bin/lib_uber_ttest.py
>+bin/lib_wx.py
>+bin/lpc_align.py
>+bin/make_pq_script.py
>+bin/make_random_timing.py
> bin/make_stim_times.py
> bin/mayo_analyze
>+bin/module_test_lib.py
> bin/mritopgm
> bin/myget
>+bin/neuro_deconvolve.py
> bin/nicat
>+bin/niccc
> bin/nifti1_test
> bin/nifti_tool
>+bin/niml_feedme
> bin/nsize
> bin/option_list.py
>-bin/p2t
> bin/plugout_drive
> bin/plugout_ijk
> bin/plugout_tt
> bin/plugout_tta
>-bin/qhull
>+bin/prompt_user
>+bin/python_module_test.py
>+bin/qdelaunay
>+bin/quick.alpha.vals.py
> bin/quickspec
>+bin/rbox
>+bin/realtime_receiver.py
> bin/rmz
> bin/rotcom
> bin/rtfeedme
> bin/serial_helper
> bin/sfim
> bin/siemens_vision
>+bin/slow_surf_clustsim.py
>+bin/smooth.R
> bin/sqwave
> bin/strblast
> bin/suma
> bin/suma_change_spec
> bin/tfim
>+bin/timing_tool.py
> bin/to3d
>+bin/uber_align_test.py
>+bin/uber_proc.py
>+bin/uber_skel.py
>+bin/uber_subject.py
>+bin/uber_ttest.py
>+bin/ui_xmat.py
> bin/waver
> bin/whereami
>+bin/xmat_tool.py
>+etc/mri/afni.cshrc
>+etc/mri/afni.profile
> include/afni/3ddata.h
>+include/afni/AFNI_label.h
>+include/afni/Amalloc.h
> include/afni/afni_environ.h
>+include/afni/afni_suma.h
> include/afni/afni_warp.h
> include/afni/coxplot.h
> include/afni/cs.h
> include/afni/cs_sort_template.h
>+include/afni/debugtrace.h
> include/afni/editvol.h
> include/afni/eispack.h
> include/afni/f2c.h
> include/afni/killer.h
>+include/afni/list_struct.h
> include/afni/machdep.h
> include/afni/mcw_glob.h
> include/afni/mcw_malloc.h
>+include/afni/mri_dicom_stuff.h
>+include/afni/mri_warpfield.h
> include/afni/mrilib.h
> include/afni/multivector.h
>+include/afni/nifti1.h
>+include/afni/nifti1_io.h
>+include/afni/nifticdf.h
> include/afni/niml.h
>+include/afni/r_idisp.h
>+include/afni/r_misc.h
>+include/afni/r_new_resam_dset.h
> include/afni/tagset.h
> include/afni/thd_compress.h
> include/afni/thd_iochan.h
>@@ -315,6 +494,9 @@
> include/afni/vecmat.h
> include/afni/vol2surf.h
> include/afni/volpack.h
>+include/afni/znzlib.h
>+lib/afni/R_io.so
>+lib/afni/libGLws.a
> lib/afni/libSUMA.a
> lib/afni/libcoxplot.a
> lib/afni/libmri.a
>@@ -328,6 +510,10 @@
> lib/afni/model_demri_3.so
> lib/afni/model_diffexp.so
> lib/afni/model_diffusion.so
>+lib/afni/model_exp.so
>+lib/afni/model_expMEMRI.so
>+lib/afni/model_expMEMRI3.so
>+lib/afni/model_expr2.so
> lib/afni/model_gammavar.so
> lib/afni/model_linear.so
> lib/afni/model_linplusort.so
>@@ -347,6 +533,8 @@
> lib/afni/plug_3dsvm.so
> lib/afni/plug_4Ddump.so
> lib/afni/plug_L1fit.so
>+lib/afni/plug_afnihistory.so
>+lib/afni/plug_aslA3D3.so
> lib/afni/plug_betafit.so
> lib/afni/plug_clust.so
> lib/afni/plug_compress.so
>@@ -407,217 +595,418 @@
> %%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
> %%DATADIR%%/TTatlas+tlrc.BRIK.gz
> %%DATADIR%%/TTatlas+tlrc.HEAD
>-%%DATADIR%%/face_AuroraRamos.jpg
>-%%DATADIR%%/face_JimEliassen.jpg
>-%%DATADIR%%/face_JohannaBaas.jpg
>-%%DATADIR%%/face_SalloumJB.jpg
>-%%DATADIR%%/face_ZangYF.jpg
>-%%DATADIR%%/face_aclark.jpg
>-%%DATADIR%%/face_adij_mannheim.jpg
>-%%DATADIR%%/face_afniman.jpg
>-%%DATADIR%%/face_agoldman.jpg
>-%%DATADIR%%/face_ahammett.jpg
>-%%DATADIR%%/face_alexandrakofinis.jpg
>-%%DATADIR%%/face_alexmartin.jpg
>-%%DATADIR%%/face_anewmanetal.jpg
>-%%DATADIR%%/face_anugent.jpg
>-%%DATADIR%%/face_asanders.jpg
>-%%DATADIR%%/face_ashackman.jpg
>-%%DATADIR%%/face_athomas.jpg
>-%%DATADIR%%/face_avovk.jpg
>-%%DATADIR%%/face_aysesaygin.jpg
>-%%DATADIR%%/face_bandettini.jpg
>-%%DATADIR%%/face_barbaracd.jpg
>-%%DATADIR%%/face_bargall.jpg
>-%%DATADIR%%/face_bea.jpg
>-%%DATADIR%%/face_becky.jpg
>-%%DATADIR%%/face_bmcnamee.jpg
>-%%DATADIR%%/face_bodurka.jpg
>-%%DATADIR%%/face_bprogers.jpg
>-%%DATADIR%%/face_brianna.jpg
>-%%DATADIR%%/face_bridget.jpg
>-%%DATADIR%%/face_brodmann.jpg
>-%%DATADIR%%/face_browndyke.jpg
>-%%DATADIR%%/face_carol.jpg
>-%%DATADIR%%/face_cbikle.jpg
>-%%DATADIR%%/face_ccss.jpg
>-%%DATADIR%%/face_claudio.jpg
>-%%DATADIR%%/face_cmoritz.jpg
>-%%DATADIR%%/face_cmyers.jpg
>-%%DATADIR%%/face_connorbandettini.jpg
>-%%DATADIR%%/face_craigstark.jpg
>-%%DATADIR%%/face_cscholl.jpg
>-%%DATADIR%%/face_csenior.jpg
>-%%DATADIR%%/face_cwettig.jpg
>-%%DATADIR%%/face_daveperlman.jpg
>-%%DATADIR%%/face_dglen.jpg
>-%%DATADIR%%/face_drewbeauchamp.jpg
>-%%DATADIR%%/face_einstein.jpg
>-%%DATADIR%%/face_eli.jpg
>-%%DATADIR%%/face_erinskinner.jpg
>-%%DATADIR%%/face_ernv.jpg
>-%%DATADIR%%/face_eteoh.jpg
>-%%DATADIR%%/face_faustalui.jpg
>-%%DATADIR%%/face_ftam.jpg
>-%%DATADIR%%/face_gambero.jpg
>-%%DATADIR%%/face_gangchen.jpg
>-%%DATADIR%%/face_gganis.jpg
>-%%DATADIR%%/face_ggiulietti.jpg
>-%%DATADIR%%/face_glarkin.jpg
>-%%DATADIR%%/face_grant.jpg
>-%%DATADIR%%/face_guidon.jpg
>-%%DATADIR%%/face_hamepark.jpg
>-%%DATADIR%%/face_hang_joon_jo.jpg
>-%%DATADIR%%/face_hanlon.jpg
>-%%DATADIR%%/face_heekeren.jpg
>-%%DATADIR%%/face_hoffmangobbini.jpg
>-%%DATADIR%%/face_ibitter.jpg
>-%%DATADIR%%/face_ilevy.jpg
>-%%DATADIR%%/face_imukai.jpg
>-%%DATADIR%%/face_jaehun.jpg
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>-%%DATADIR%%/face_jchoi.jpg
>-%%DATADIR%%/face_jigokudani.jpg
>-%%DATADIR%%/face_jkurata.jpg
>-%%DATADIR%%/face_jskipper.jpg
>-%%DATADIR%%/face_jweisberg.jpg
>-%%DATADIR%%/face_kastnerlab.jpg
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>-%%DATADIR%%/face_kkwong.jpg
>-%%DATADIR%%/face_kropella.jpg
>-%%DATADIR%%/face_kschreiber.jpg
>-%%DATADIR%%/face_ksimonyan.jpg
>-%%DATADIR%%/face_kuba.jpg
>-%%DATADIR%%/face_kylesimmons.jpg
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>-%%DATADIR%%/face_laura.jpg
>-%%DATADIR%%/face_lfrank.jpg
>-%%DATADIR%%/face_lincoln1.jpg
>-%%DATADIR%%/face_lincoln2.jpg
>-%%DATADIR%%/face_lindachao.jpg
>-%%DATADIR%%/face_lindathede.jpg
>-%%DATADIR%%/face_lisaeyler.jpg
>-%%DATADIR%%/face_lizyoder.jpg
>-%%DATADIR%%/face_ljcox.jpg
>-%%DATADIR%%/face_llatour.jpg
>-%%DATADIR%%/face_lmccall.jpg
>-%%DATADIR%%/face_locikidsucsd.jpg
>-%%DATADIR%%/face_lukas.jpg
>-%%DATADIR%%/face_mamann.jpg
>-%%DATADIR%%/face_maxwell.jpg
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>-%%DATADIR%%/face_mgarolera.jpg
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>-%%DATADIR%%/face_richd.jpg
>-%%DATADIR%%/face_rjsquirrel.jpg
>-%%DATADIR%%/face_rprost.jpg
>-%%DATADIR%%/face_rreynolds.jpg
>-%%DATADIR%%/face_rsaad.jpg
>-%%DATADIR%%/face_rwcox.jpg
>-%%DATADIR%%/face_rwcox2.jpg
>-%%DATADIR%%/face_rwcox3.jpg
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>-%%DATADIR%%/face_ssmall.jpg
>-%%DATADIR%%/face_steverao.jpg
>-%%DATADIR%%/face_sumabucks.jpg
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>-%%DATADIR%%/face_vdcosta.jpg
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>-%%DATADIR%%/face_vincent4.jpg
>-%%DATADIR%%/face_vnapadow.jpg
>-%%DATADIR%%/face_wapostman1.jpg
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>-%%DATADIR%%/face_wmluh.jpg
>-%%DATADIR%%/face_wpostman.jpg
>-%%DATADIR%%/face_xinianzuo.jpg
>-%%DATADIR%%/face_zsaad.jpg
>-%%DATADIR%%/face_zsaad2.jpg
>-%%DATADIR%%/face_zzzdini.jpg
>-%%DATADIR%%/face_zzzsunbrain.jpg
>-%%DATADIR%%/poem_bj1.txt
>-%%DATADIR%%/poem_eapoe1.txt
>-%%DATADIR%%/poem_em.txt
>-%%DATADIR%%/poem_ghm3.txt
>-%%DATADIR%%/poem_gmh1.txt
>-%%DATADIR%%/poem_gmh2.txt
>-%%DATADIR%%/poem_gmh3.txt
>-%%DATADIR%%/poem_jm1.txt
>-%%DATADIR%%/poem_pbs1.txt
>-%%DATADIR%%/poem_pbs2.txt
>-%%DATADIR%%/poem_rf1.txt
>-%%DATADIR%%/poem_rk1.txt
>-%%DATADIR%%/poem_rls1.txt
>-%%DATADIR%%/poem_ww1.txt
>-%%DATADIR%%/poem_ww2.txt
>-%%DATADIR%%/splash_afnisuma.jpg
>-%%DATADIR%%/splash_angkorwat.jpg
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>-%%DATADIR%%/splash_bobkarl.jpg
>-%%DATADIR%%/splash_bonampak.jpg
>-%%DATADIR%%/splash_chichen.jpg
>-%%DATADIR%%/splash_earth.jpg
>-%%DATADIR%%/splash_elephant.jpg
>-%%DATADIR%%/splash_emars.jpg
>-%%DATADIR%%/splash_joesun.jpg
>-%%DATADIR%%/splash_kebb.jpg
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>-%%DATADIR%%/splash_malbork.jpg
>-%%DATADIR%%/splash_marsalbor.jpg
>-%%DATADIR%%/splash_mcw03.jpg
>-%%DATADIR%%/splash_mtyale.jpg
>-%%DATADIR%%/splash_palenque.jpg
>-%%DATADIR%%/splash_pisa.jpg
>-%%DATADIR%%/splash_seoul.jpg
>-%%DATADIR%%/splash_sscc03.jpg
>-%%DATADIR%%/splash_sscc2006.jpg
>-%%DATADIR%%/splash_themaze.jpg
>-%%DATADIR%%/splash_titicaca.jpg
>-%%DATADIR%%/splash_todaiji.jpg
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>-%%DATADIR%%/splash_wall.jpg
>-%%DATADIR%%/splash_wutaishan.jpg
>-%%DATADIR%%/splash_xian.jpg
>+%%DATADIR%%/afnigui.html
>+%%DATADIR%%/afnigui_cursor1030.jpg
>+%%DATADIR%%/afnigui_cursor1100.jpg
>+%%DATADIR%%/afnigui_logo.jpg
>+%%DATADIR%%/funstuff/face_7Tesla.jpg
>+%%DATADIR%%/funstuff/face_AuroraRamos.jpg
>+%%DATADIR%%/funstuff/face_CassieK.jpg
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>+%%DATADIR%%/funstuff/face_ElyseNLucas.jpg
>+%%DATADIR%%/funstuff/face_EnDem.jpg
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>+%%DATADIR%%/funstuff/face_TracyJill.jpg
>+%%DATADIR%%/funstuff/face_UnalSakoglu.jpg
>+%%DATADIR%%/funstuff/face_ZangYF.jpg
>+%%DATADIR%%/funstuff/face_aclark.jpg
>+%%DATADIR%%/funstuff/face_adij_mannheim.jpg
>+%%DATADIR%%/funstuff/face_afniman.jpg
>+%%DATADIR%%/funstuff/face_afnitengwar.jpg
>+%%DATADIR%%/funstuff/face_afnitree.jpg
>+%%DATADIR%%/funstuff/face_agoldman.jpg
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>+%%DATADIR%%/funstuff/face_alexandrakofinis.jpg
>+%%DATADIR%%/funstuff/face_alexmartin.jpg
>+%%DATADIR%%/funstuff/face_alexmartin2.jpg
>+%%DATADIR%%/funstuff/face_aliceh.jpg
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>+%%DATADIR%%/funstuff/face_asanders.jpg
>+%%DATADIR%%/funstuff/face_ashackman.jpg
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>+%%DATADIR%%/funstuff/face_hang_joon_jo.jpg
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>+%%DATADIR%%/funstuff/face_hanlon.jpg
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>+%%DATADIR%%/funstuff/face_houstonbull.jpg
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>+%%DATADIR%%/funstuff/face_ilevy.jpg
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>+%%DATADIR%%/funstuff/face_iordanis.jpg
>+%%DATADIR%%/funstuff/face_isaac.jpg
>+%%DATADIR%%/funstuff/face_jaehun.jpg
>+%%DATADIR%%/funstuff/face_jaehun2.jpg
>+%%DATADIR%%/funstuff/face_jbacon.jpg
>+%%DATADIR%%/funstuff/face_jbinder.jpg
>+%%DATADIR%%/funstuff/face_jbjork.jpg
>+%%DATADIR%%/funstuff/face_jchoi.jpg
>+%%DATADIR%%/funstuff/face_jenevans.jpg
>+%%DATADIR%%/funstuff/face_jigokudani.jpg
>+%%DATADIR%%/funstuff/face_jimhaxby.jpg
>+%%DATADIR%%/funstuff/face_jkurata.jpg
>+%%DATADIR%%/funstuff/face_jlisinski.jpg
>+%%DATADIR%%/funstuff/face_joecal.jpg
>+%%DATADIR%%/funstuff/face_jongminlee.jpg
>+%%DATADIR%%/funstuff/face_josie.jpg
>+%%DATADIR%%/funstuff/face_jskipper.jpg
>+%%DATADIR%%/funstuff/face_juliet.jpg
>+%%DATADIR%%/funstuff/face_jweisberg.jpg
>+%%DATADIR%%/funstuff/face_kastnerlab.jpg
>+%%DATADIR%%/funstuff/face_kate.jpg
>+%%DATADIR%%/funstuff/face_kebb.jpg
>+%%DATADIR%%/funstuff/face_kevinpeter.jpg
>+%%DATADIR%%/funstuff/face_kkwong.jpg
>+%%DATADIR%%/funstuff/face_kmurphy.jpg
>+%%DATADIR%%/funstuff/face_kropella.jpg
>+%%DATADIR%%/funstuff/face_kschreiber.jpg
>+%%DATADIR%%/funstuff/face_ksimonyan.jpg
>+%%DATADIR%%/funstuff/face_kuba.jpg
>+%%DATADIR%%/funstuff/face_kylesimmons.jpg
>+%%DATADIR%%/funstuff/face_kylesimmons2.jpg
>+%%DATADIR%%/funstuff/face_larrylatour.jpg
>+%%DATADIR%%/funstuff/face_lask.jpg
>+%%DATADIR%%/funstuff/face_laura.jpg
>+%%DATADIR%%/funstuff/face_lfrank.jpg
>+%%DATADIR%%/funstuff/face_lincoln1.jpg
>+%%DATADIR%%/funstuff/face_lincoln2.jpg
>+%%DATADIR%%/funstuff/face_lindachao.jpg
>+%%DATADIR%%/funstuff/face_lindathede.jpg
>+%%DATADIR%%/funstuff/face_lisaeyler.jpg
>+%%DATADIR%%/funstuff/face_lizyoder.jpg
>+%%DATADIR%%/funstuff/face_ljcox.jpg
>+%%DATADIR%%/funstuff/face_llatour.jpg
>+%%DATADIR%%/funstuff/face_lmccall.jpg
>+%%DATADIR%%/funstuff/face_locikidsucsd.jpg
>+%%DATADIR%%/funstuff/face_lucasglover.jpg
>+%%DATADIR%%/funstuff/face_lukas.jpg
>+%%DATADIR%%/funstuff/face_maitalneta.jpg
>+%%DATADIR%%/funstuff/face_mamann.jpg
>+%%DATADIR%%/funstuff/face_mamlung.jpg
>+%%DATADIR%%/funstuff/face_marthabradley.jpg
>+%%DATADIR%%/funstuff/face_maxwell.jpg
>+%%DATADIR%%/funstuff/face_mbeauchamp.jpg
>+%%DATADIR%%/funstuff/face_mbelmonte.jpg
>+%%DATADIR%%/funstuff/face_mcole.jpg
>+%%DATADIR%%/funstuff/face_megcrew.jpg
>+%%DATADIR%%/funstuff/face_melissah.jpg
>+%%DATADIR%%/funstuff/face_merejane.jpg
>+%%DATADIR%%/funstuff/face_mgarolera.jpg
>+%%DATADIR%%/funstuff/face_mkenney.jpg
>+%%DATADIR%%/funstuff/face_mmaieron.jpg
>+%%DATADIR%%/funstuff/face_mmk.jpg
>+%%DATADIR%%/funstuff/face_mmk2.jpg
>+%%DATADIR%%/funstuff/face_mmk3.jpg
>+%%DATADIR%%/funstuff/face_mmk4.jpg
>+%%DATADIR%%/funstuff/face_mmur.jpg
>+%%DATADIR%%/funstuff/face_mpinsk.jpg
>+%%DATADIR%%/funstuff/face_mpschroeder.jpg
>+%%DATADIR%%/funstuff/face_mruppe.jpg
>+%%DATADIR%%/funstuff/face_mscohen.jpg
>+%%DATADIR%%/funstuff/face_notspm.jpg
>+%%DATADIR%%/funstuff/face_omph.jpg
>+%%DATADIR%%/funstuff/face_patbedard.jpg
>+%%DATADIR%%/funstuff/face_patziad.jpg
>+%%DATADIR%%/funstuff/face_pba5.jpg
>+%%DATADIR%%/funstuff/face_pbdet.jpg
>+%%DATADIR%%/funstuff/face_pchristidis.jpg
>+%%DATADIR%%/funstuff/face_peterb.jpg
>+%%DATADIR%%/funstuff/face_peterkaskan.jpg
>+%%DATADIR%%/funstuff/face_phineasgage.jpg
>+%%DATADIR%%/funstuff/face_phoebechan.jpg
>+%%DATADIR%%/funstuff/face_prowser.jpg
>+%%DATADIR%%/funstuff/face_psfb.jpg
>+%%DATADIR%%/funstuff/face_psfbx.jpg
>+%%DATADIR%%/funstuff/face_qiulin.jpg
>+%%DATADIR%%/funstuff/face_qutian.jpg
>+%%DATADIR%%/funstuff/face_rabeauchamp.jpg
>+%%DATADIR%%/funstuff/face_rafaelsutherland.jpg
>+%%DATADIR%%/funstuff/face_rameses.jpg
>+%%DATADIR%%/funstuff/face_rbirn.jpg
>+%%DATADIR%%/funstuff/face_rdesai.jpg
>+%%DATADIR%%/funstuff/face_rhammett.jpg
>+%%DATADIR%%/funstuff/face_rhenderson.jpg
>+%%DATADIR%%/funstuff/face_rhoge.jpg
>+%%DATADIR%%/funstuff/face_richd.jpg
>+%%DATADIR%%/funstuff/face_rjsquirrel.jpg
>+%%DATADIR%%/funstuff/face_rmbirn.jpg
>+%%DATADIR%%/funstuff/face_robterwill.jpg
>+%%DATADIR%%/funstuff/face_rprost.jpg
>+%%DATADIR%%/funstuff/face_rrey2.jpg
>+%%DATADIR%%/funstuff/face_rreynolds.jpg
>+%%DATADIR%%/funstuff/face_rsaad.jpg
>+%%DATADIR%%/funstuff/face_rwcox.jpg
>+%%DATADIR%%/funstuff/face_rwcox2.jpg
>+%%DATADIR%%/funstuff/face_rwcox3.jpg
>+%%DATADIR%%/funstuff/face_rwcox4.jpg
>+%%DATADIR%%/funstuff/face_rwcox5.jpg
>+%%DATADIR%%/funstuff/face_rwcox6.jpg
>+%%DATADIR%%/funstuff/face_rwcox7.jpg
>+%%DATADIR%%/funstuff/face_rwcox8.jpg
>+%%DATADIR%%/funstuff/face_rwcox9.jpg
>+%%DATADIR%%/funstuff/face_rwcoxA.jpg
>+%%DATADIR%%/funstuff/face_rwcoxB.jpg
>+%%DATADIR%%/funstuff/face_rwcoxC.jpg
>+%%DATADIR%%/funstuff/face_rwcoxD.jpg
>+%%DATADIR%%/funstuff/face_rwcoxE.jpg
>+%%DATADIR%%/funstuff/face_rwcoxF.jpg
>+%%DATADIR%%/funstuff/face_rwcoxG.jpg
>+%%DATADIR%%/funstuff/face_saccanch.jpg
>+%%DATADIR%%/funstuff/face_sean2.jpg
>+%%DATADIR%%/funstuff/face_shayna3.jpg
>+%%DATADIR%%/funstuff/face_shyaustrian.jpg
>+%%DATADIR%%/funstuff/face_sjapee.jpg
>+%%DATADIR%%/funstuff/face_skammy.jpg
>+%%DATADIR%%/funstuff/face_skapdoskar.jpg
>+%%DATADIR%%/funstuff/face_sknoonan.jpg
>+%%DATADIR%%/funstuff/face_smarrett.jpg
>+%%DATADIR%%/funstuff/face_smlaconte.jpg
>+%%DATADIR%%/funstuff/face_snakeblood.jpg
>+%%DATADIR%%/funstuff/face_snakesoju.jpg
>+%%DATADIR%%/funstuff/face_ssaad.jpg
>+%%DATADIR%%/funstuff/face_ssmall.jpg
>+%%DATADIR%%/funstuff/face_steverao.jpg
>+%%DATADIR%%/funstuff/face_sumabucks.jpg
>+%%DATADIR%%/funstuff/face_tainan.jpg
>+%%DATADIR%%/funstuff/face_tang.jpg
>+%%DATADIR%%/funstuff/face_tieshan.jpg
>+%%DATADIR%%/funstuff/face_tolkien.jpg
>+%%DATADIR%%/funstuff/face_tomholroyd.jpg
>+%%DATADIR%%/funstuff/face_tross.jpg
>+%%DATADIR%%/funstuff/face_vader.jpg
>+%%DATADIR%%/funstuff/face_vdcosta.jpg
>+%%DATADIR%%/funstuff/face_veronica.jpg
>+%%DATADIR%%/funstuff/face_vhradil.jpg
>+%%DATADIR%%/funstuff/face_vincent1.jpg
>+%%DATADIR%%/funstuff/face_vincent2.jpg
>+%%DATADIR%%/funstuff/face_vincent3.jpg
>+%%DATADIR%%/funstuff/face_vincent4.jpg
>+%%DATADIR%%/funstuff/face_vnapadow.jpg
>+%%DATADIR%%/funstuff/face_wapostman1.jpg
>+%%DATADIR%%/funstuff/face_wapostman2.jpg
>+%%DATADIR%%/funstuff/face_wendyhasenkamp.jpg
>+%%DATADIR%%/funstuff/face_wmluh.jpg
>+%%DATADIR%%/funstuff/face_wpostman.jpg
>+%%DATADIR%%/funstuff/face_xinianzuo.jpg
>+%%DATADIR%%/funstuff/face_xzhang.jpg
>+%%DATADIR%%/funstuff/face_yingyingwang.jpg
>+%%DATADIR%%/funstuff/face_zman.jpg
>+%%DATADIR%%/funstuff/face_zsaad.jpg
>+%%DATADIR%%/funstuff/face_zsaad2.jpg
>+%%DATADIR%%/funstuff/face_zsaad3.jpg
>+%%DATADIR%%/funstuff/face_zsaad4.jpg
>+%%DATADIR%%/funstuff/face_zsaad5.jpg
>+%%DATADIR%%/funstuff/face_zsaad6.jpg
>+%%DATADIR%%/funstuff/face_zzzdini.jpg
>+%%DATADIR%%/funstuff/face_zzzsunbrain.jpg
>+%%DATADIR%%/funstuff/poem_bj1.txt
>+%%DATADIR%%/funstuff/poem_eapoe1.txt
>+%%DATADIR%%/funstuff/poem_em.txt
>+%%DATADIR%%/funstuff/poem_ghm3.txt
>+%%DATADIR%%/funstuff/poem_gmh1.txt
>+%%DATADIR%%/funstuff/poem_gmh2.txt
>+%%DATADIR%%/funstuff/poem_gmh3.txt
>+%%DATADIR%%/funstuff/poem_jm1.txt
>+%%DATADIR%%/funstuff/poem_pbs1.txt
>+%%DATADIR%%/funstuff/poem_pbs2.txt
>+%%DATADIR%%/funstuff/poem_rf1.txt
>+%%DATADIR%%/funstuff/poem_rk1.txt
>+%%DATADIR%%/funstuff/poem_rls1.txt
>+%%DATADIR%%/funstuff/poem_ww1.txt
>+%%DATADIR%%/funstuff/poem_ww2.txt
>+%%DATADIR%%/funstuff/splash_12Apostles.jpg
>+%%DATADIR%%/funstuff/splash_3monkeys.jpg
>+%%DATADIR%%/funstuff/splash_NMcloud.jpg
>+%%DATADIR%%/funstuff/splash_afniegypt.jpg
>+%%DATADIR%%/funstuff/splash_afnirocks.jpg
>+%%DATADIR%%/funstuff/splash_afnistuff.jpg
>+%%DATADIR%%/funstuff/splash_afnisuma.jpg
>+%%DATADIR%%/funstuff/splash_afnitree.jpg
>+%%DATADIR%%/funstuff/splash_angkorwat.jpg
>+%%DATADIR%%/funstuff/splash_arno.jpg
>+%%DATADIR%%/funstuff/splash_aruba.jpg
>+%%DATADIR%%/funstuff/splash_asosan.jpg
>+%%DATADIR%%/funstuff/splash_backyard1.jpg
>+%%DATADIR%%/funstuff/splash_barcelona.jpg
>+%%DATADIR%%/funstuff/splash_bawiti.jpg
>+%%DATADIR%%/funstuff/splash_betshean.jpg
>+%%DATADIR%%/funstuff/splash_birds.jpg
>+%%DATADIR%%/funstuff/splash_blackdesert.jpg
>+%%DATADIR%%/funstuff/splash_blackdesert2.jpg
>+%%DATADIR%%/funstuff/splash_bluemosque.jpg
>+%%DATADIR%%/funstuff/splash_bobkarl.jpg
>+%%DATADIR%%/funstuff/splash_bonampak.jpg
>+%%DATADIR%%/funstuff/splash_brains25c.jpg
>+%%DATADIR%%/funstuff/splash_brycecanyon.jpg
>+%%DATADIR%%/funstuff/splash_buckskin.jpg
>+%%DATADIR%%/funstuff/splash_camel.jpg
>+%%DATADIR%%/funstuff/splash_capitol.jpg
>+%%DATADIR%%/funstuff/splash_cavalieri.jpg
>+%%DATADIR%%/funstuff/splash_chichen.jpg
>+%%DATADIR%%/funstuff/splash_chipmunk.jpg
>+%%DATADIR%%/funstuff/splash_chongqing.jpg
>+%%DATADIR%%/funstuff/splash_clearcreek.jpg
>+%%DATADIR%%/funstuff/splash_colossi.jpg
>+%%DATADIR%%/funstuff/splash_dartmouth.jpg
>+%%DATADIR%%/funstuff/splash_deadsea.jpg
>+%%DATADIR%%/funstuff/splash_deertrap.jpg
>+%%DATADIR%%/funstuff/splash_discovery.jpg
>+%%DATADIR%%/funstuff/splash_domerock.jpg
>+%%DATADIR%%/funstuff/splash_earth.jpg
>+%%DATADIR%%/funstuff/splash_earthtopo.jpg
>+%%DATADIR%%/funstuff/splash_elephant.jpg
>+%%DATADIR%%/funstuff/splash_emars.jpg
>+%%DATADIR%%/funstuff/splash_giza.jpg
>+%%DATADIR%%/funstuff/splash_hagiasophia.jpg
>+%%DATADIR%%/funstuff/splash_hanyang.jpg
>+%%DATADIR%%/funstuff/splash_harleyjeff.jpg
>+%%DATADIR%%/funstuff/splash_horus.jpg
>+%%DATADIR%%/funstuff/splash_houston.jpg
>+%%DATADIR%%/funstuff/splash_imcheon.jpg
>+%%DATADIR%%/funstuff/splash_joesun.jpg
>+%%DATADIR%%/funstuff/splash_karski.jpg
>+%%DATADIR%%/funstuff/splash_kebb.jpg
>+%%DATADIR%%/funstuff/splash_lightsaber.jpg
>+%%DATADIR%%/funstuff/splash_littlepetra.jpg
>+%%DATADIR%%/funstuff/splash_lunchtime.jpg
>+%%DATADIR%%/funstuff/splash_machu.jpg
>+%%DATADIR%%/funstuff/splash_malbork.jpg
>+%%DATADIR%%/funstuff/splash_marsalbor.jpg
>+%%DATADIR%%/funstuff/splash_mayanmexico.jpg
>+%%DATADIR%%/funstuff/splash_mcw03.jpg
>+%%DATADIR%%/funstuff/splash_melbourne.jpg
>+%%DATADIR%%/funstuff/splash_monastery.jpg
>+%%DATADIR%%/funstuff/splash_monumentvalley.jpg
>+%%DATADIR%%/funstuff/splash_mtyale.jpg
>+%%DATADIR%%/funstuff/splash_ncku.jpg
>+%%DATADIR%%/funstuff/splash_palenque.jpg
>+%%DATADIR%%/funstuff/splash_pba5.jpg
>+%%DATADIR%%/funstuff/splash_petra.jpg
>+%%DATADIR%%/funstuff/splash_petratreasury.jpg
>+%%DATADIR%%/funstuff/splash_pisa.jpg
>+%%DATADIR%%/funstuff/splash_pisa2010.jpg
>+%%DATADIR%%/funstuff/splash_pot.jpg
>+%%DATADIR%%/funstuff/splash_potomac.jpg
>+%%DATADIR%%/funstuff/splash_prayerflags.jpg
>+%%DATADIR%%/funstuff/splash_qufu.jpg
>+%%DATADIR%%/funstuff/splash_redtree.jpg
>+%%DATADIR%%/funstuff/splash_rhinos.jpg
>+%%DATADIR%%/funstuff/splash_sandiego.jpg
>+%%DATADIR%%/funstuff/splash_seoul.jpg
>+%%DATADIR%%/funstuff/splash_seoul2011.jpg
>+%%DATADIR%%/funstuff/splash_shadowbob.jpg
>+%%DATADIR%%/funstuff/splash_sixpoles.jpg
>+%%DATADIR%%/funstuff/splash_soren.jpg
>+%%DATADIR%%/funstuff/splash_squidding.jpg
>+%%DATADIR%%/funstuff/splash_sscc03.jpg
>+%%DATADIR%%/funstuff/splash_sscc2006.jpg
>+%%DATADIR%%/funstuff/splash_sscc2009.jpg
>+%%DATADIR%%/funstuff/splash_sunset.jpg
>+%%DATADIR%%/funstuff/splash_tangtomb.jpg
>+%%DATADIR%%/funstuff/splash_themaze.jpg
>+%%DATADIR%%/funstuff/splash_thewave.jpg
>+%%DATADIR%%/funstuff/splash_thewave2.jpg
>+%%DATADIR%%/funstuff/splash_thewave3.jpg
>+%%DATADIR%%/funstuff/splash_titicaca.jpg
>+%%DATADIR%%/funstuff/splash_todaiji.jpg
>+%%DATADIR%%/funstuff/splash_troll.jpg
>+%%DATADIR%%/funstuff/splash_tulsa2011.jpg
>+%%DATADIR%%/funstuff/splash_twinkies.jpg
>+%%DATADIR%%/funstuff/splash_usajapan.jpg
>+%%DATADIR%%/funstuff/splash_vincent.jpg
>+%%DATADIR%%/funstuff/splash_wadirum.jpg
>+%%DATADIR%%/funstuff/splash_wall.jpg
>+%%DATADIR%%/funstuff/splash_watercube.jpg
>+%%DATADIR%%/funstuff/splash_wedding2011.jpg
>+%%DATADIR%%/funstuff/splash_westva1.jpg
>+%%DATADIR%%/funstuff/splash_westva2.jpg
>+%%DATADIR%%/funstuff/splash_whitedesert.jpg
>+%%DATADIR%%/funstuff/splash_wutaishan.jpg
>+%%DATADIR%%/funstuff/splash_wutaishanX.jpg
>+%%DATADIR%%/funstuff/splash_xian.jpg
>+%%DATADIR%%/funstuff/splash_yrkim.jpg
>+%%PORTDOCS%%%%DOCSDIR%%/README.3dsvm.realtime
> %%PORTDOCS%%%%DOCSDIR%%/README.Ifile
>+%%PORTDOCS%%%%DOCSDIR%%/README.afnigui
> %%PORTDOCS%%%%DOCSDIR%%/README.atlas_building
> %%PORTDOCS%%%%DOCSDIR%%/README.attributes
> %%PORTDOCS%%%%DOCSDIR%%/README.bzip2
>@@ -639,6 +1028,8 @@
> %%PORTDOCS%%%%DOCSDIR%%/README.web
> %%PORTDOCS%%%%DOCSDIR%%/README.ziad
> %%PORTDOCS%%@dirrm %%DOCSDIR%%
>+@dirrm %%DATADIR%%/funstuff
> @dirrm %%DATADIR%%
> @dirrm lib/afni
> @dirrm include/afni
>+@dirrmtry etc/mri
>===> Done

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Attachments on bug 167651: 124170