Attachment 130982 Details for Bug 175014 – file.diff

[patch] file.diff

file.diff (text/plain), 3.32 KB, created by tkato432 on 2013-01-05 18:10:01 UTC

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Creator: tkato432

Created: 2013-01-05 18:10:01 UTC

Size: 3.32 KB

patch

obsolete

>diff -urN /usr/ports/biology/phyml/Makefile biology/phyml/Makefile
>--- /usr/ports/biology/phyml/Makefile	2012-12-05 05:57:24.000000000 +0900
>+++ biology/phyml/Makefile	2012-12-06 05:08:03.000000000 +0900
>@@ -1,31 +1,33 @@
>-# New ports collection makefile for:   phyml 3.0 20090706
>-# Date created:        July 17, 2009
>-# Whom:                ballen
>-#
>+# Created by: ballen
> # $FreeBSD: head/biology/phyml/Makefile 308268 2012-12-04 20:28:16Z zi $
>-#
> 
> PORTNAME=	phyml
>-PORTVERSION=	20090706
>+PORTVERSION=	20121109
> CATEGORIES=	biology
> MASTER_SITES=	GOOGLE_CODE
>-DISTNAME=	phyml_20090706
>+DISTNAME=	${PORTNAME}-20120412
>+DIST_SUBDIR=	${PORTNAME}
>+
>+PATCH_SITES=	${MASTER_SITES}
>+PATCHFILES=	${PORTVERSION}.patch
>+PATCH_DIST_STRIP=	-p4
> 
> MAINTAINER=	ports@FreeBSD.org
>-COMMENT=	A simple, fast, and accurate algorithm to estimate large phylogenies
>+COMMENT=	Simple, fast, and accurate algorithm to estimate large phylogenies
> 
>-WRKSRC=		${WRKDIR}/${PORTNAME}/src
>-GNU_CONFIGURE=	yes
>-PLIST_FILES=	bin/phyml
>-USE_AUTOTOOLS=	automake aclocal
>-AUTOMAKE_ARGS=	--add-missing
>+LICENSE=	GPLv2
> 
>-.include <bsd.port.pre.mk>
>+PATCH_WRKSRC=	${WRKSRC}/src
> 
>-pre-configure:
>-	${RM} ${WRKSRC}/missing
>+USE_AUTOTOOLS=	aclocal autoheader automake autoconf
>+AUTOMAKE_ARGS=	--add-missing
>+MAKE_JOBS_SAFE=	yes
>+
>+PLIST_FILES=	bin/phyml
> 
>-pre-install:
>-	${CHMOD} a+x ${WRKSRC}/install-sh
>+post-patch:
>+	@${REINPLACE_CMD} -e \
>+		'/^AC_INIT/s|,esyscmd.*,|,[${PORTVERSION}],| ; \
>+		 s|-O2 -msse|$${CFLAGS}|' ${WRKSRC}/configure.ac
> 
>-.include <bsd.port.post.mk>
>+.include <bsd.port.mk>
>diff -urN /usr/ports/biology/phyml/distinfo biology/phyml/distinfo
>--- /usr/ports/biology/phyml/distinfo	2012-11-08 06:54:35.000000000 +0900
>+++ biology/phyml/distinfo	2012-12-05 23:24:37.000000000 +0900
>@@ -1,2 +1,4 @@
>-SHA256 (phyml_20090706.tar.gz) = b39fa8ba2bc3a6566f3463c77db0d8992f71a71af353be539d0916173785d4bd
>-SIZE (phyml_20090706.tar.gz) = 818229
>+SHA256 (phyml/phyml-20120412.tar.gz) = a43e51534a1ae2d1ee4c94ced3a1855813ff4872a6c9c2b83b369ddb71198417
>+SIZE (phyml/phyml-20120412.tar.gz) = 4089133
>+SHA256 (phyml/20121109.patch) = 3aa8bebd0ff78a553795ddda512ef1c7542d1e3c90c1da61c7125c304f6caa2c
>+SIZE (phyml/20121109.patch) = 11016
>diff -urN /usr/ports/biology/phyml/files/patch-src-configure biology/phyml/files/patch-src-configure
>--- /usr/ports/biology/phyml/files/patch-src-configure	2012-11-08 06:54:34.000000000 +0900
>+++ biology/phyml/files/patch-src-configure	1970-01-01 09:00:00.000000000 +0900
>@@ -1,11 +0,0 @@
>---- configure.orig	2009-07-20 16:01:12.000000000 -0400
>-+++ configure	2009-07-20 16:02:03.000000000 -0400
>-@@ -5491,8 +5491,6 @@
>- esac
>- # End of cross-compilation macros
>- 
>--CFLAGS+=" -O3 -fomit-frame-pointer -funroll-loops -Wall"
>--
>- ac_config_files="$ac_config_files Makefile"
>- 
>- cat >confcache <<\_ACEOF
>diff -urN /usr/ports/biology/phyml/files/patch-src-configure.ac biology/phyml/files/patch-src-configure.ac
>--- /usr/ports/biology/phyml/files/patch-src-configure.ac	2012-11-08 06:54:34.000000000 +0900
>+++ biology/phyml/files/patch-src-configure.ac	1970-01-01 09:00:00.000000000 +0900
>@@ -1,11 +0,0 @@
>---- configure.ac.orig	2009-07-17 14:57:39.000000000 -0600
>-+++ configure.ac	2009-07-17 14:57:55.000000000 -0600
>-@@ -58,8 +58,6 @@
>- esac
>- # End of cross-compilation macros
>- 
>--CFLAGS+=" -O3 -fomit-frame-pointer -funroll-loops -Wall"
>--
>- AC_CONFIG_FILES([Makefile])
>- AC_OUTPUT
>-

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Attachments on bug 175014: 130982