Attachment 135582 Details for Bug 180518 – file.diff

[patch] file.diff

file.diff (text/plain), 3.83 KB, created by tkato432 on 2013-07-12 19:10:06 UTC

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Creator: tkato432

Created: 2013-07-12 19:10:06 UTC

Size: 3.83 KB

patch

obsolete

>diff -urN /usr/ports/biology/tinker/Makefile biology/tinker/Makefile
>--- /usr/ports/biology/tinker/Makefile	2013-06-21 03:53:38.000000000 +0900
>+++ biology/tinker/Makefile	2013-07-13 00:00:00.000000000 +0900
>@@ -2,7 +2,7 @@
> # $FreeBSD: head/biology/tinker/Makefile 319343 2013-05-29 05:25:49Z miwi $
> 
> PORTNAME=	tinker
>-PORTVERSION=	6.2.05
>+PORTVERSION=	6.2.06
> CATEGORIES=	biology
> MASTER_SITES=	http://dasher.wustl.edu/tinker/downloads/
> 
>@@ -39,6 +39,9 @@
> post-extract:
> 	@${CHMOD} -R u+w ${WRKSRC}
> 
>+pre-build:
>+	@${RM} -f ${BUILD_WRKSRC}/*.c 
>+
> post-install:
> 	@${MKDIR} ${DATADIR}
> 	(cd ${INSTALL_WRKSRC} && ${INSTALL_DATA} tinker.txt ${DATADIR})
>diff -urN /usr/ports/biology/tinker/distinfo biology/tinker/distinfo
>--- /usr/ports/biology/tinker/distinfo	2013-06-21 03:53:38.000000000 +0900
>+++ biology/tinker/distinfo	2013-07-13 00:00:00.000000000 +0900
>@@ -1,2 +1,2 @@
>-SHA256 (tinker-6.2.05.tar.gz) = 73dcb0fff809bd38e8fbede896b778302ff1e89c90129ca30b54d773b2ea8e50
>-SIZE (tinker-6.2.05.tar.gz) = 20246464
>+SHA256 (tinker-6.2.06.tar.gz) = 6d5e79cd2a431787cd77bce2c469b7eec219f8e874425dcf8ebb74dabb0d985c
>+SIZE (tinker-6.2.06.tar.gz) = 20182802
>diff -urN /usr/ports/biology/tinker/files/patch-make__Makefile biology/tinker/files/patch-make__Makefile
>--- /usr/ports/biology/tinker/files/patch-make__Makefile	2013-06-21 03:53:38.000000000 +0900
>+++ biology/tinker/files/patch-make__Makefile	2013-07-13 00:00:00.000000000 +0900
>@@ -53,18 +53,18 @@
>  
>  ##
>  ##  Machine:  Macintosh
>-@@ -595,6 +609,8 @@
>+@@ -597,14 +611,13 @@
>             xyzpdb.x \
>             xyzsybyl.x
>  
>+-%.o: %.f
>+-	${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ 
> +.SUFFIXES: .x
>-+
>- .f.o:
>- 	${F77} ${F77FLAGS} ${OPTFLAGS} $*.f 
>- 
>-@@ -604,8 +620,8 @@
>- server.o:
>- 	${F77} ${F77FLAGS} ${OPTFLAGS} server.f
>+ 
>+-%.o: %.c
>+-	${CC} ${CFLAGS} ${INCLUDEDIR} ${OPTFLAGS} $<
>++.f.o:
>++	${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ 
>  
> -%.x: %.o libtinker.a
> -	${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@
>@@ -73,14 +73,19 @@
>  
>  all:	${EXEFILES}
>  
>-@@ -616,66 +632,66 @@
>- 	cat *.i *.f *.c > tinker.txt
>+@@ -612,70 +625,70 @@
>+ 	rm -f *.o *.a *.x
>+ 
>+ listing:
>+-	cat *.i *.f *.c > tinker.txt
>++	cat *.i *.f > tinker.txt
>  
>  rename:
> -	mv  alchemy.x    $(BINDIR)/alchemy
> -	mv  analyze.x    $(BINDIR)/analyze
> -	mv  anneal.x     $(BINDIR)/anneal
> -	mv  archive.x    $(BINDIR)/archive
>+-	mv  bar.x        $(BINDIR)/bar
> -	mv  correlate.x  $(BINDIR)/correlate
> -	mv  crystal.x    $(BINDIR)/crystal
> -	mv  diffuse.x    $(BINDIR)/diffuse
>@@ -141,6 +146,7 @@
> +	${BSD_INSTALL_PROGRAM}  analyze.x    $(BINDIR)/analyze
> +	${BSD_INSTALL_PROGRAM}  anneal.x     $(BINDIR)/anneal
> +	${BSD_INSTALL_PROGRAM}  archive.x    $(BINDIR)/archive
>++	${BSD_INSTALL_PROGRAM}  bar.x        $(BINDIR)/bar
> +	${BSD_INSTALL_PROGRAM}  correlate.x  $(BINDIR)/correlate
> +	${BSD_INSTALL_PROGRAM}  crystal.x    $(BINDIR)/crystal
> +	${BSD_INSTALL_PROGRAM}  diffuse.x    $(BINDIR)/diffuse
>diff -urN /usr/ports/biology/tinker/pkg-plist biology/tinker/pkg-plist
>--- /usr/ports/biology/tinker/pkg-plist	2013-06-21 03:53:38.000000000 +0900
>+++ biology/tinker/pkg-plist	2013-07-13 00:00:00.000000000 +0900
>@@ -2,6 +2,7 @@
> bin/analyze
> bin/anneal
> bin/archive
>+bin/bar
> bin/correlate
> bin/crystal
> bin/diffuse
>@@ -156,6 +157,7 @@
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz
>+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.dyn
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq
>@@ -279,7 +281,6 @@
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz
>-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.dyn
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz
> %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int

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Attachments on bug 180518: 135582