diff -urN /usr/ports/biology/lagan/Makefile biology/lagan/Makefile --- /usr/ports/biology/lagan/Makefile 2013-11-06 22:05:39.000000000 +0900 +++ biology/lagan/Makefile 2013-11-25 00:00:00.000000000 +0900 @@ -39,7 +39,6 @@ READMES= README.FIRST README.chaos README.lagan README.mlagan \ README.tools README.shuffle -NO_STAGE= yes post-patch: @${FIND} ${WRKSRC} -name "Makefile" | ${XARGS} ${REINPLACE_CMD} -e \ '/^CC/s|^|#| ; \ @@ -47,26 +46,27 @@ s|$$(CC) -o|$$(CC) $$(CFLAGS) -o| ; \ s|$$(CPP) -o|$$(CXX) $$(CXXFLAGS) -o| ; \ s|$$(CLINKER) $$(OPTFLAGS)|$$(CXX) $$(LDFLAGS)|' + @${FIND} ${WRKSRC}/src -name "*.c" | ${XARGS} ${REINPLACE_CMD} -e \ + 's|^inline |static inline |' do-install: - @${MKDIR} ${LAGAN_DIR} + @${MKDIR} ${STAGEDIR}${LAGAN_DIR} .for exe in ${EXECUTABLES} - ${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${LAGAN_DIR} + ${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${STAGEDIR}${LAGAN_DIR} .endfor .for script in ${SCRIPTS} - ${INSTALL_SCRIPT} ${WRKSRC}/${script} ${LAGAN_DIR} + ${INSTALL_SCRIPT} ${WRKSRC}/${script} ${STAGEDIR}${LAGAN_DIR} .endfor - @${MKDIR} ${LAGAN_DIR}/utils + @${MKDIR} ${STAGEDIR}${LAGAN_DIR}/utils .for exeutil in ${EXEUTILS} - ${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${LAGAN_DIR}/utils + ${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${STAGEDIR}${LAGAN_DIR}/utils .endfor .for scriptutil in ${SCRIPTUTILS} - ${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${LAGAN_DIR}/utils + ${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${STAGEDIR}${LAGAN_DIR}/utils .endfor - @${MKDIR} ${LAGAN_DIR}/Readmes + @${MKDIR} ${STAGEDIR}${LAGAN_DIR}/Readmes .for readme in ${READMES} - ${INSTALL_DATA} ${WRKSRC}/Readmes/${readme} ${LAGAN_DIR}/Readmes + ${INSTALL_DATA} ${WRKSRC}/Readmes/${readme} ${STAGEDIR}${LAGAN_DIR}/Readmes .endfor - @${CAT} ${PKGMESSAGE} .include diff -urN /usr/ports/biology/lagan/files/patch-src__glocal__rightinfluence.cpp biology/lagan/files/patch-src__glocal__rightinfluence.cpp --- /usr/ports/biology/lagan/files/patch-src__glocal__rightinfluence.cpp 1970-01-01 09:00:00.000000000 +0900 +++ biology/lagan/files/patch-src__glocal__rightinfluence.cpp 2013-11-25 00:00:00.000000000 +0900 @@ -0,0 +1,33 @@ +--- src/glocal/rightinfluence.cpp.orig ++++ src/glocal/rightinfluence.cpp +@@ -1,6 +1,6 @@ + #include + +-Fragment origin, end; ++Fragment origin, my_end; + + // Sets the first default owner of the whole region + void initRI(RI *RightInfluence, long long int scoreIndex) { +@@ -18,17 +18,17 @@ + + // hack to aid winner selection + origin.score = -1; +- end.score = -2; +- origin.totalScore = end.totalScore = 0; ++ my_end.score = -2; ++ origin.totalScore = my_end.totalScore = 0; + + // will win against anyone +- end.seq1End = 0; end.seq2End = 0; +- end.seq1Start = 0; end.seq2Start = 0; ++ my_end.seq1End = 0; my_end.seq2End = 0; ++ my_end.seq1Start = 0; my_end.seq2Start = 0; + + origin.back = NULL; + + RightInfluence->act[-INF] = &origin; +- RightInfluence->act[+INF] = &end; ++ RightInfluence->act[+INF] = &my_end; + } + +