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(-)./Makefile (-20 / +20 lines)
Lines 2-18 Link Here
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# $FreeBSD: head/biology/emboss/Makefile 352986 2014-05-05 09:45:36Z bapt $
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# $FreeBSD: head/biology/emboss/Makefile 352986 2014-05-05 09:45:36Z bapt $
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PORTNAME=	emboss
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PORTNAME=	emboss
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PORTVERSION=	6.2.0
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PORTVERSION=	6.6.0
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RELEASE=	${PORTNAME:tu}-${PORTVERSION}
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PORTREVISION=	3
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CATEGORIES=	biology
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CATEGORIES=	biology
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MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/
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MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/
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DISTNAME=	${RELEASE}
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DISTNAME=	${PORTNAME:tu}-${PORTVERSION}
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DIST_SUBDIR=	${PORTNAME}
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DIST_SUBDIR=	${PORTNAME}
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MAINTAINER=	wen@FreeBSD.org
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MAINTAINER=	wen@FreeBSD.org
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COMMENT=	A collection of open source tools for genetic sequence analysis
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COMMENT=	A collection of open source tools for genetic sequence analysis
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LICENSE=	GPLv2
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BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
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BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
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		primer3:${PORTSDIR}/biology/primer3
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		primer3:${PORTSDIR}/biology/primer3
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LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
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LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
Lines 22-58 Link Here
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PREFIX?=	${LOCALBASE}/emboss
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PREFIX?=	${LOCALBASE}/emboss
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NO_MTREE=	yes
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NO_MTREE=	yes
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USES=		gmake
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USES=		gmake libtool iconv
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USE_SUBMAKE=	yes
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USE_SUBMAKE=	yes
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GNU_CONFIGURE=	yes
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GNU_CONFIGURE=	yes
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USE_AUTOTOOLS=	libtool
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USE_LDCONFIG=	yes
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USE_LDCONFIG=	yes
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SUB_FILES=	pkg-message
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SUB_FILES=	pkg-message
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SUB_LIST=	PREFIX=${PREFIX} DATADIR=${DATADIR}
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SUB_LIST=	PREFIX=${PREFIX} DATADIR=${DATADIR}
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LDFLAGS+=	-L${LOCALBASE}/lib
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CONFIGURE_ARGS+=${ICONV_CONFIGURE_ARG}
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DOCSDIR=	${PREFIX}/share/${PORTNAME:tu}/doc
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DOCSDIR=	${PREFIX}/share/${PORTNAME:tu}/doc
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DATADIR=	${PREFIX}/share/${PORTNAME:tu}
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DATADIR=	${PREFIX}/share/${PORTNAME:tu}
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CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
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OPTIONS_DEFINE=	DOCS X11
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OPTIONS_DEFAULT=	X11
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.if !defined(WITHOUT_X11)
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DOCS_CONFIGURE_ON=	--with-docroot=${DOCSDIR}
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USE_XORG=	x11
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X11_USE=	XORG=x11
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USES+=		motif
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X11_USES=	motif
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LIB_DEPENDS+=	libgd.so:${PORTSDIR}/graphics/gd \
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X11_LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
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		libpng15.so:${PORTSDIR}/graphics/png
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		libpng15.so:${PORTSDIR}/graphics/png
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.else
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X11_CONFIGURE_OFF=	--without-x
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CONFIGURE_ARGS+= --without-x
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.endif
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DOC_DIRS=	doc/manuals doc/tutorials doc/programs/text doc/programs/html
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CONFIG_FILE=	${WRKSRC}/emboss/emboss.default.template
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CONFIG_FILE=	${WRKSRC}/emboss/emboss.default.template
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NO_STAGE=	yes
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post-patch:
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	@${REINPLACE_CMD} -e 's/-liconv/${ICONV_LIB}/' ${WRKSRC}/configure
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pre-install:
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pre-install:
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	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${DATADIR}#' ${CONFIG_FILE}
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	@ ${REINPLACE_CMD} -e 's#%%DATADIR%%#${PREFIX}/share/${PORTNAME:tu}#' ${CONFIG_FILE}
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post-install:
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post-install:
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	${CHOWN} ${SHAREOWN}:${SHAREGRP} ${DATADIR}/emboss.default.template
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	${INSTALL_DATA} ${CONFIG_FILE} ${STAGEDIR}${DATADIR}
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	@ ${CAT} ${PKGMESSAGE}
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	${CHOWN} ${SHAREOWN}:${SHAREGRP} ${STAGEDIR}${DATADIR}/emboss.default.template
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.include <bsd.port.mk>
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.include <bsd.port.mk>
(-)./distinfo (-2 / +2 lines)
Lines 1-2 Link Here
1
SHA256 (emboss/EMBOSS-6.2.0.tar.gz) = 4726371c0bcf3e232a5ee6b334e74b8c284dcbdcb176a475e77699515f8d122b
1
SHA256 (emboss/EMBOSS-6.6.0.tar.gz) = 7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e
2
SIZE (emboss/EMBOSS-6.2.0.tar.gz) = 23430911
2
SIZE (emboss/EMBOSS-6.6.0.tar.gz) = 117962028
(-)./files/patch-Makefile.in (+30 lines)
Line 0 Link Here
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--- Makefile.in.orig	2014-05-29 03:27:28.070199330 +0600
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+++ Makefile.in	2014-05-29 03:28:00.167196553 +0600
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@@ -756,7 +756,7 @@
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 install-exec-am:
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 	@$(NORMAL_INSTALL)
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-	$(MAKE) $(AM_MAKEFLAGS) install-exec-hook
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+	$(MAKE) $(AM_MAKEFLAGS)
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 install-html: install-html-recursive
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 install-html-am:
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@@ -810,7 +810,7 @@
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 	distclean-libtool distclean-tags distcleancheck distdir \
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 	distuninstallcheck dvi dvi-am html html-am info info-am \
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 	install install-am install-data install-data-am install-dvi \
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-	install-dvi-am install-exec install-exec-am install-exec-hook \
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+	install-dvi-am install-exec install-exec-am \
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 	install-html install-html-am install-info install-info-am \
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 	install-man install-pdf install-pdf-am install-ps \
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 	install-ps-am install-strip installcheck installcheck-am \
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@@ -832,9 +832,6 @@
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 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; )
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 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
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-install-exec-hook:
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-	$(bindir)/embossupdate
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-
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 # Tell versions [3.59,3.63) of GNU make to not export all variables.
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 # Otherwise a system limit (for SysV at least) may be exceeded.
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 .NOEXPORT:
(-)./files/patch-emboss-Makefile.in (+10 lines)
Line 0 Link Here
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--- emboss/Makefile.in.orig	2014-05-29 14:42:20.540406535 +0600
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+++ emboss/Makefile.in	2014-05-29 14:42:42.364404204 +0600
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@@ -3216,7 +3216,6 @@
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 	$(am__append_3) ../ajax/pcre/libepcre.la \
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 	../plplot/libeplplot.la $(XLIB)
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 dist_pkgdata_DATA = \
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-emboss.default.template \
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 emboss.standard \
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 server.biomart \
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 server.dasregistry \
(-)./pkg-plist (-812 / +1121 lines)
Lines 1-6 Link Here
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bin/aaindexextract
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bin/aaindexextract
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bin/abiview
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bin/abiview
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bin/acdc
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bin/acdc
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bin/acdgalaxy
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bin/acdlog
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bin/acdpretty
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bin/acdpretty
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bin/acdtable
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bin/acdtable
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bin/acdtrace
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bin/acdtrace
Lines 8-18 Link Here
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bin/aligncopy
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bin/aligncopy
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bin/aligncopypair
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bin/aligncopypair
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bin/antigenic
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bin/antigenic
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bin/assemblyget
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bin/backtranambig
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bin/backtranambig
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bin/backtranseq
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bin/backtranseq
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bin/banana
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bin/banana
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bin/biosed
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bin/biosed
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bin/btwisted
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bin/btwisted
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bin/cachedas
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bin/cachedbfetch
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bin/cacheebeyesearch
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bin/cacheensembl
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bin/cai
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bin/cai
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bin/chaos
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bin/chaos
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bin/charge
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bin/charge
Lines 35-62 Link Here
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bin/dbifasta
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bin/dbifasta
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bin/dbiflat
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bin/dbiflat
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bin/dbigcg
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bin/dbigcg
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bin/dbtell
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bin/dbxcompress
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bin/dbxedam
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bin/dbxfasta
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bin/dbxfasta
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bin/dbxflat
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bin/dbxflat
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bin/dbxgcg
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bin/dbxgcg
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bin/dbxobo
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bin/dbxreport
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bin/dbxresource
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bin/dbxstat
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bin/dbxtax
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bin/dbxuncompress
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bin/degapseq
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bin/degapseq
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bin/density
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bin/density
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bin/descseq
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bin/descseq
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bin/diffseq
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bin/diffseq
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bin/digest
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bin/distmat
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bin/distmat
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bin/dotmatcher
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bin/dotmatcher
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bin/dotpath
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bin/dotpath
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bin/dottup
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bin/dottup
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bin/dreg
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bin/dreg
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bin/drfinddata
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bin/drfindformat
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bin/drfindid
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bin/drfindresource
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bin/drget
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bin/drtext
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bin/edamdef
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bin/edamhasinput
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bin/edamhasoutput
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bin/edamisformat
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bin/edamisid
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bin/edamname
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bin/edialign
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bin/edialign
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bin/einverted
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bin/einverted
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bin/embossdata
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bin/embossdata
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bin/embossupdate
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bin/embossversion
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bin/embossversion
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bin/emma
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bin/emma
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bin/emowse
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bin/emowse
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bin/entret
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bin/entret
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bin/epestfind
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bin/epestfind
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bin/eprimer3
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bin/eprimer3
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bin/eprimer32
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bin/equicktandem
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bin/equicktandem
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bin/est2genome
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bin/est2genome
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bin/etandem
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bin/etandem
Lines 64-70 Link Here
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bin/extractfeat
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bin/extractfeat
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bin/extractseq
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bin/extractseq
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bin/featcopy
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bin/featcopy
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bin/featmerge
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bin/featreport
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bin/featreport
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bin/feattext
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bin/findkm
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bin/findkm
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bin/freak
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bin/freak
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bin/fuzznuc
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bin/fuzznuc
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bin/garnier
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bin/garnier
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bin/geecee
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bin/geecee
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bin/getorf
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bin/getorf
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bin/godef
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bin/goname
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bin/helixturnhelix
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bin/helixturnhelix
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bin/hmoment
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bin/hmoment
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bin/iep
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bin/iep
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bin/infoalign
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bin/infoalign
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bin/infoassembly
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bin/infobase
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bin/infobase
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bin/inforesidue
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bin/inforesidue
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bin/infoseq
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bin/infoseq
Lines 113-123 Link Here
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bin/nthseqset
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bin/nthseqset
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bin/octanol
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bin/octanol
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bin/oddcomp
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bin/oddcomp
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bin/ontocount
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bin/ontoget
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bin/ontogetcommon
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bin/ontogetdown
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bin/ontogetobsolete
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bin/ontogetroot
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bin/ontogetsibs
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bin/ontogetup
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bin/ontoisobsolete
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bin/ontotext
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bin/palindrome
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bin/palindrome
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bin/pasteseq
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bin/pasteseq
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bin/patmatdb
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bin/patmatdb
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bin/patmatmotifs
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bin/patmatmotifs
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bin/pepcoil
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bin/pepcoil
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bin/pepdigest
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bin/pepinfo
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bin/pepinfo
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bin/pepnet
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bin/pepnet
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bin/pepstats
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bin/pepstats
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bin/rebaseextract
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bin/rebaseextract
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bin/recoder
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bin/recoder
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bin/redata
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bin/redata
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bin/refseqget
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bin/remap
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bin/remap
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bin/restover
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bin/restover
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bin/restrict
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bin/restrict
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bin/revseq
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bin/revseq
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bin/runJemboss.csh
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bin/runJemboss.sh
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bin/seealso
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bin/seealso
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bin/seqcount
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bin/seqmatchall
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bin/seqmatchall
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bin/seqret
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bin/seqret
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bin/seqretsetall
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bin/seqretsetall
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bin/seqretsplit
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bin/seqretsplit
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bin/seqxref
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bin/seqxrefget
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bin/servertell
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bin/showalign
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bin/showalign
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bin/showdb
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bin/showdb
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bin/showfeat
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bin/showfeat
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bin/showorf
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bin/showorf
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bin/showpep
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bin/showpep
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bin/showserver
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bin/showseq
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bin/showseq
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bin/shuffleseq
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bin/shuffleseq
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bin/sigcleave
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bin/sigcleave
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bin/stssearch
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bin/stssearch
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bin/supermatcher
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bin/supermatcher
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bin/syco
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bin/syco
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bin/taxget
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bin/taxgetdown
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bin/taxgetrank
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bin/taxgetspecies
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bin/taxgetup
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bin/tcode
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bin/tcode
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bin/textget
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bin/textsearch
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bin/textsearch
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bin/tfextract
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bin/tfextract
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bin/tfm
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bin/tfm
Lines 184-189 Link Here
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bin/trimspace
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bin/trimspace
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bin/twofeat
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bin/twofeat
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bin/union
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bin/union
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bin/urlget
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bin/variationget
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bin/vectorstrip
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bin/vectorstrip
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bin/water
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bin/water
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bin/whichdb
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bin/whichdb
Lines 191-208 Link Here
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bin/wordcount
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bin/wordcount
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bin/wordfinder
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bin/wordfinder
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bin/wordmatch
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bin/wordmatch
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bin/wossdata
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bin/wossinput
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bin/wossname
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bin/wossname
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bin/wossoperation
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bin/wossoutput
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bin/wossparam
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bin/wosstopic
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bin/xmlget
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bin/xmltext
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bin/yank
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bin/yank
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include/ajacd.h
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include/ajacd.h
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include/ajalign.h
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include/ajalign.h
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include/ajarch.h
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include/ajarch.h
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include/ajarr.h
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include/ajarr.h
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include/ajassem.h
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include/ajassemdata.h
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include/ajassemdb.h
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include/ajassemread.h
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include/ajassemwrite.h
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include/ajassert.h
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include/ajassert.h
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include/ajax.h
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include/ajax.h
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include/ajbamindex.h
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include/ajbase.h
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include/ajbase.h
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include/ajcall.h
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include/ajcall.h
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include/ajcigar.h
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include/ajcod.h
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include/ajcod.h
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include/ajdan.h
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include/ajdan.h
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include/ajdas.h
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include/ajdefine.h
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include/ajdefine.h
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include/ajdmx.h
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include/ajdmx.h
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include/ajdom.h
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include/ajdom.h
Lines 210-257 Link Here
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include/ajexcept.h
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include/ajexcept.h
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include/ajfeat.h
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include/ajfeat.h
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include/ajfeatdata.h
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include/ajfeatdata.h
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include/ajfeatdb.h
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include/ajfeatread.h
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include/ajfeatwrite.h
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include/ajfile.h
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include/ajfile.h
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include/ajfiledata.h
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include/ajfiledata.h
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include/ajfileio.h
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include/ajfileio.h
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include/ajfmt.h
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include/ajfmt.h
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include/ajftp.h
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include/ajgraph.h
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include/ajgraph.h
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include/ajgraphstruct.h
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include/ajgraphstruct.h
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include/ajhist.h
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include/ajhist.h
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include/ajhttp.h
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include/ajindex.h
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include/ajindex.h
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include/ajjava.h
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include/ajjava.h
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include/ajlib.h
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include/ajlist.h
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include/ajlist.h
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include/ajmart.h
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include/ajmath.h
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include/ajmath.h
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include/ajmatrices.h
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include/ajmatrices.h
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include/ajmem.h
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include/ajmem.h
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include/ajmess.h
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include/ajmess.h
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include/ajnam.h
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include/ajnam.h
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include/ajnexus.h
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include/ajnexus.h
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include/ajobo.h
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include/ajobodata.h
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include/ajobodb.h
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include/ajoboread.h
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include/ajobowrite.h
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include/ajpat.h
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include/ajpat.h
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include/ajpdb.h
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include/ajpdb.h
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include/ajpdbio.h
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include/ajpdbio.h
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include/ajphylo.h
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include/ajphylo.h
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include/ajquery.h
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include/ajquerydata.h
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include/ajrange.h
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include/ajrange.h
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include/ajrefseq.h
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include/ajrefseqdata.h
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include/ajrefseqdb.h
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include/ajrefseqread.h
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include/ajrefseqwrite.h
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include/ajreg.h
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include/ajreg.h
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include/ajreport.h
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include/ajreport.h
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include/ajresource.h
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include/ajresourcedata.h
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include/ajresourcedb.h
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include/ajresourceread.h
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include/ajresourcewrite.h
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include/ajseq.h
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include/ajseq.h
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include/ajseqabi.h
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include/ajseqabi.h
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include/ajseqbam.h
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include/ajseqdata.h
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include/ajseqdata.h
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include/ajseqdb.h
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include/ajseqdb.h
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include/ajseqread.h
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include/ajseqread.h
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include/ajseqtype.h
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include/ajseqtype.h
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include/ajseqwrite.h
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include/ajseqwrite.h
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include/ajsoap.h
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include/ajsort.h
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include/ajsort.h
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include/ajsql.h
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include/ajsql.h
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include/ajstr.h
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include/ajstr.h
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include/ajsys.h
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include/ajsys.h
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include/ajtable.h
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include/ajtable.h
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include/ajtagval.h
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include/ajtax.h
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include/ajtaxdata.h
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include/ajtaxdb.h
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include/ajtaxread.h
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include/ajtaxwrite.h
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include/ajtext.h
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include/ajtextdata.h
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include/ajtextdb.h
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include/ajtextread.h
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include/ajtextwrite.h
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include/ajtime.h
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include/ajtime.h
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include/ajtranslate.h
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include/ajtranslate.h
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include/ajtree.h
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include/ajtree.h
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include/ajurl.h
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include/ajurldata.h
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include/ajurldb.h
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include/ajurlread.h
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include/ajurlwrite.h
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include/ajutil.h
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include/ajutil.h
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include/ajvar.h
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include/ajvarbcf.h
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include/ajvardata.h
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include/ajvardb.h
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include/ajvarread.h
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include/ajvarwrite.h
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include/ajvector.h
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include/ajvector.h
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include/crc32.h
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include/ajxml.h
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include/deflate.h
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include/ajxmldata.h
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include/ajxmldb.h
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include/ajxmlread.h
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include/ajxmlwrite.h
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include/eexpat/ascii.h
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include/eexpat/asciitab.h
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include/eexpat/expat.h
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include/eexpat/expat_config.h
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include/eexpat/expat_external.h
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include/eexpat/expatemboss.h
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include/eexpat/iasciitab.h
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include/eexpat/internal.h
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include/eexpat/latin1tab.h
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include/eexpat/nametab.h
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include/eexpat/utf8tab.h
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include/eexpat/xmlrole.h
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include/eexpat/xmltok.h
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include/eexpat/xmltok_impl.h
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include/embaln.h
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include/embaln.h
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include/embcom.h
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include/embcom.h
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include/embcons.h
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include/embcons.h
Lines 278-283 Link Here
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include/embshow.h
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include/embshow.h
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include/embsig.h
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include/embsig.h
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include/embword.h
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include/embword.h
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include/ensalign.h
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include/ensanalysis.h
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include/ensanalysis.h
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include/ensassemblyexception.h
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include/ensassemblyexception.h
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include/ensassembly.h
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include/ensmiscellaneous.h
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1157
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1180
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1758
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1765
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1771
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1775
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1778
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1779
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1790
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1455
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1791
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1792
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1703
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1704
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1705
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1706
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1796
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1802
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1803
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1804
%%PORTDOCS%%%%DOCSDIR%%/programs/html/makenucseq.html
1805
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1806
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1807
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1808
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1809
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1810
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1811
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1813
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1820
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1821
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1822
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1823
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1824
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1825
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1826
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1827
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1828
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1829
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1830
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1831
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1832
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1833
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1834
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1835
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1836
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1837
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1838
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1839
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1840
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1841
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1842
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1843
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1844
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1845
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1846
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1847
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1848
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1849
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1850
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1851
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1852
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1853
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1854
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1855
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1856
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1857
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1858
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1859
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1860
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1861
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1862
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1863
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1864
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1865
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1866
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1867
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1868
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1869
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1870
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1871
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1872
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1873
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1874
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1875
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1876
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1877
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1878
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1879
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1880
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1881
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyplot.html
1882
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyseq.html
1883
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1884
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1885
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1886
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1887
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1888
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1889
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1890
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1891
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1892
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1893
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1894
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1895
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1896
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1897
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1898
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1899
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1900
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1901
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1902
%%PORTDOCS%%%%DOCSDIR%%/programs/html/restrict.html
1903
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1904
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1905
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1906
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1907
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1908
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1909
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1910
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1911
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1912
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1913
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1914
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1915
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1916
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1917
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1918
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1919
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1920
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1921
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1922
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1923
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1924
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1925
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1926
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1927
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1928
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1929
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1930
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1931
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1932
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1933
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1934
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1935
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1936
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1937
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1938
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1939
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tmap.html
1940
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tranalign.html
1941
%%PORTDOCS%%%%DOCSDIR%%/programs/html/transeq.html
1942
%%PORTDOCS%%%%DOCSDIR%%/programs/html/trimest.html
1943
%%PORTDOCS%%%%DOCSDIR%%/programs/html/trimseq.html
1944
%%PORTDOCS%%%%DOCSDIR%%/programs/html/trimspace.html
1945
%%PORTDOCS%%%%DOCSDIR%%/programs/html/twofeat.html
1946
%%PORTDOCS%%%%DOCSDIR%%/programs/html/union.html
1947
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_database_creation_group.html
1948
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_database_indexing_group.html
1949
%%PORTDOCS%%%%DOCSDIR%%/programs/html/vectorstrip.html
1950
%%PORTDOCS%%%%DOCSDIR%%/programs/html/water.html
1951
%%PORTDOCS%%%%DOCSDIR%%/programs/html/whichdb.html
1952
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wobble.1.wobble.gif
1953
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wobble.html
1954
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wordcount.html
1955
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1956
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1957
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossname.html
1958
%%PORTDOCS%%%%DOCSDIR%%/programs/html/yank.html
1959
%%PORTDOCS%%%%DOCSDIR%%/programs/text/aaindexextract.txt
1960
%%PORTDOCS%%%%DOCSDIR%%/programs/text/abiview.txt
1961
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdc.txt
1962
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdlog.txt
1963
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1964
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1965
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1966
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1967
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1968
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1969
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1970
%%PORTDOCS%%%%DOCSDIR%%/programs/text/backtranambig.txt
1971
%%PORTDOCS%%%%DOCSDIR%%/programs/text/backtranseq.txt
1972
%%PORTDOCS%%%%DOCSDIR%%/programs/text/banana.txt
1973
%%PORTDOCS%%%%DOCSDIR%%/programs/text/biosed.txt
1974
%%PORTDOCS%%%%DOCSDIR%%/programs/text/btwisted.txt
1975
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cai.txt
1976
%%PORTDOCS%%%%DOCSDIR%%/programs/text/chaos.txt
1977
%%PORTDOCS%%%%DOCSDIR%%/programs/text/charge.txt
1978
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1979
%%PORTDOCS%%%%DOCSDIR%%/programs/text/chips.txt
1980
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cirdna.txt
1981
%%PORTDOCS%%%%DOCSDIR%%/programs/text/codcmp.txt
1982
%%PORTDOCS%%%%DOCSDIR%%/programs/text/codcopy.txt
1983
%%PORTDOCS%%%%DOCSDIR%%/programs/text/coderet.txt
1984
%%PORTDOCS%%%%DOCSDIR%%/programs/text/complex.txt
1985
%%PORTDOCS%%%%DOCSDIR%%/programs/text/compseq.txt
1986
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cons.txt
1987
%%PORTDOCS%%%%DOCSDIR%%/programs/text/consambig.txt
1988
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cpgplot.txt
1989
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1990
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cusp.txt
1991
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cutgextract.txt
1992
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cutseq.txt
1993
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dan.txt
1994
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbiblast.txt
1995
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbifasta.txt
1996
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbiflat.txt
1997
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbigcg.txt
1998
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxfasta.txt
1999
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxflat.txt
2000
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxgcg.txt
2001
%%PORTDOCS%%%%DOCSDIR%%/programs/text/degapseq.txt
2002
%%PORTDOCS%%%%DOCSDIR%%/programs/text/density.txt
2003
%%PORTDOCS%%%%DOCSDIR%%/programs/text/descseq.txt
2004
%%PORTDOCS%%%%DOCSDIR%%/programs/text/diffseq.txt
2005
%%PORTDOCS%%%%DOCSDIR%%/programs/text/distmat.txt
2006
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dotmatcher.txt
2007
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dotpath.txt
2008
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dottup.txt
2009
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dreg.txt
2010
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edialign.txt
2011
%%PORTDOCS%%%%DOCSDIR%%/programs/text/einverted.txt
2012
%%PORTDOCS%%%%DOCSDIR%%/programs/text/embossdata.txt
2013
%%PORTDOCS%%%%DOCSDIR%%/programs/text/embossversion.txt
2014
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emma.txt
2015
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emowse.txt
2016
%%PORTDOCS%%%%DOCSDIR%%/programs/text/entret.txt
2017
%%PORTDOCS%%%%DOCSDIR%%/programs/text/epestfind.txt
2018
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eprimer3.txt
2019
%%PORTDOCS%%%%DOCSDIR%%/programs/text/equicktandem.txt
2020
%%PORTDOCS%%%%DOCSDIR%%/programs/text/est2genome.txt
2021
%%PORTDOCS%%%%DOCSDIR%%/programs/text/etandem.txt
2022
%%PORTDOCS%%%%DOCSDIR%%/programs/text/extractalign.txt
2023
%%PORTDOCS%%%%DOCSDIR%%/programs/text/extractfeat.txt
2024
%%PORTDOCS%%%%DOCSDIR%%/programs/text/extractseq.txt
2025
%%PORTDOCS%%%%DOCSDIR%%/programs/text/featcopy.txt
2026
%%PORTDOCS%%%%DOCSDIR%%/programs/text/featreport.txt
2027
%%PORTDOCS%%%%DOCSDIR%%/programs/text/findkm.txt
2028
%%PORTDOCS%%%%DOCSDIR%%/programs/text/freak.txt
2029
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzznuc.txt
2030
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzzpro.txt
2031
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzztran.txt
2032
%%PORTDOCS%%%%DOCSDIR%%/programs/text/garnier.txt
2033
%%PORTDOCS%%%%DOCSDIR%%/programs/text/geecee.txt
2034
%%PORTDOCS%%%%DOCSDIR%%/programs/text/getorf.txt
2035
%%PORTDOCS%%%%DOCSDIR%%/programs/text/helixturnhelix.txt
2036
%%PORTDOCS%%%%DOCSDIR%%/programs/text/hmoment.txt
2037
%%PORTDOCS%%%%DOCSDIR%%/programs/text/iep.txt
2038
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infoalign.txt
2039
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infobase.txt
2040
%%PORTDOCS%%%%DOCSDIR%%/programs/text/inforesidue.txt
2041
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infoseq.txt
2042
%%PORTDOCS%%%%DOCSDIR%%/programs/text/isochore.txt
2043
%%PORTDOCS%%%%DOCSDIR%%/programs/text/jaspextract.txt
2044
%%PORTDOCS%%%%DOCSDIR%%/programs/text/jaspscan.txt
2045
%%PORTDOCS%%%%DOCSDIR%%/programs/text/jembossctl.txt
2046
%%PORTDOCS%%%%DOCSDIR%%/programs/text/lindna.txt
2047
%%PORTDOCS%%%%DOCSDIR%%/programs/text/listor.txt
2048
%%PORTDOCS%%%%DOCSDIR%%/programs/text/makenucseq.txt
2049
%%PORTDOCS%%%%DOCSDIR%%/programs/text/makeprotseq.txt
2050
%%PORTDOCS%%%%DOCSDIR%%/programs/text/marscan.txt
2051
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskambignuc.txt
2052
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskambigprot.txt
2053
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskfeat.txt
2054
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskseq.txt
2055
%%PORTDOCS%%%%DOCSDIR%%/programs/text/matcher.txt
2056
%%PORTDOCS%%%%DOCSDIR%%/programs/text/megamerger.txt
2057
%%PORTDOCS%%%%DOCSDIR%%/programs/text/merger.txt
2058
%%PORTDOCS%%%%DOCSDIR%%/programs/text/msbar.txt
2059
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwcontam.txt
2060
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwfilter.txt
2061
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needle.txt
2062
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needleall.txt
2063
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgreport.txt
2064
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgseek.txt
2065
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newseq.txt
2066
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nohtml.txt
2067
%%PORTDOCS%%%%DOCSDIR%%/programs/text/noreturn.txt
2068
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nospace.txt
2069
%%PORTDOCS%%%%DOCSDIR%%/programs/text/notab.txt
2070
%%PORTDOCS%%%%DOCSDIR%%/programs/text/notseq.txt
2071
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nthseq.txt
2072
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nthseqset.txt
2073
%%PORTDOCS%%%%DOCSDIR%%/programs/text/octanol.txt
2074
%%PORTDOCS%%%%DOCSDIR%%/programs/text/oddcomp.txt
2075
%%PORTDOCS%%%%DOCSDIR%%/programs/text/palindrome.txt
2076
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pasteseq.txt
2077
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatdb.txt
2078
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatmotifs.txt
2079
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepcoil.txt
2080
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepinfo.txt
2081
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepnet.txt
2082
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepstats.txt
2083
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwheel.txt
2084
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindow.txt
2085
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindowall.txt
2086
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotcon.txt
2087
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotorf.txt
2088
%%PORTDOCS%%%%DOCSDIR%%/programs/text/polydot.txt
2089
%%PORTDOCS%%%%DOCSDIR%%/programs/text/preg.txt
2090
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyplot.txt
2091
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyseq.txt
2092
%%PORTDOCS%%%%DOCSDIR%%/programs/text/primersearch.txt
2093
%%PORTDOCS%%%%DOCSDIR%%/programs/text/printsextract.txt
2094
%%PORTDOCS%%%%DOCSDIR%%/programs/text/profit.txt
2095
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophecy.txt
2096
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophet.txt
2097
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prosextract.txt
2098
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pscan.txt
2099
%%PORTDOCS%%%%DOCSDIR%%/programs/text/psiphi.txt
2100
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rebaseextract.txt
2101
%%PORTDOCS%%%%DOCSDIR%%/programs/text/recoder.txt
2102
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2103
%%PORTDOCS%%%%DOCSDIR%%/programs/text/remap.txt
2104
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restover.txt
2105
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restrict.txt
2106
%%PORTDOCS%%%%DOCSDIR%%/programs/text/revseq.txt
2107
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seealso.txt
2108
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqmatchall.txt
2109
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqret.txt
2110
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqretsetall.txt
2111
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqretsplit.txt
2112
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2113
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showdb.txt
2114
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2115
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2116
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showorf.txt
2117
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showseq.txt
2118
%%PORTDOCS%%%%DOCSDIR%%/programs/text/shuffleseq.txt
2119
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sigcleave.txt
2120
%%PORTDOCS%%%%DOCSDIR%%/programs/text/silent.txt
2121
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sirna.txt
2122
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sixpack.txt
2123
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sizeseq.txt
2124
%%PORTDOCS%%%%DOCSDIR%%/programs/text/skipredundant.txt
2125
%%PORTDOCS%%%%DOCSDIR%%/programs/text/skipseq.txt
2126
%%PORTDOCS%%%%DOCSDIR%%/programs/text/splitsource.txt
2127
%%PORTDOCS%%%%DOCSDIR%%/programs/text/splitter.txt
2128
%%PORTDOCS%%%%DOCSDIR%%/programs/text/stretcher.txt
2129
%%PORTDOCS%%%%DOCSDIR%%/programs/text/stssearch.txt
2130
%%PORTDOCS%%%%DOCSDIR%%/programs/text/supermatcher.txt
2131
%%PORTDOCS%%%%DOCSDIR%%/programs/text/syco.txt
2132
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tcode.txt
2133
%%PORTDOCS%%%%DOCSDIR%%/programs/text/textsearch.txt
2134
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfextract.txt
2135
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfm.txt
2136
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfscan.txt
2137
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tmap.txt
2138
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tranalign.txt
2139
%%PORTDOCS%%%%DOCSDIR%%/programs/text/transeq.txt
2140
%%PORTDOCS%%%%DOCSDIR%%/programs/text/trimest.txt
2141
%%PORTDOCS%%%%DOCSDIR%%/programs/text/trimseq.txt
2142
%%PORTDOCS%%%%DOCSDIR%%/programs/text/trimspace.txt
2143
%%PORTDOCS%%%%DOCSDIR%%/programs/text/twofeat.txt
2144
%%PORTDOCS%%%%DOCSDIR%%/programs/text/union.txt
2145
%%PORTDOCS%%%%DOCSDIR%%/programs/text/vectorstrip.txt
2146
%%PORTDOCS%%%%DOCSDIR%%/programs/text/water.txt
2147
%%PORTDOCS%%%%DOCSDIR%%/programs/text/whichdb.txt
2148
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wobble.txt
2149
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wordcount.txt
2150
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wordfinder.txt
2151
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wordmatch.txt
2152
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossname.txt
2153
%%PORTDOCS%%%%DOCSDIR%%/programs/text/yank.txt
2154
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-gcg.ppt
2155
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-interfaces.ppt
2156
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-talk.ppt
2157
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss_tut.tar.gz
2158
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_group.html
2159
%%PORTDOCS%%%%DOCSDIR%%/programs/html/assemblyget.html
2160
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cachedas.html
2161
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cachedbfetch.html
2162
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cacheebeyesearch.html
2163
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cacheensembl.html
2164
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_resources_group.html
2165
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_chemistry_data_group.html
2166
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_feature_data_group.html
2167
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_group.html
2168
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_ontology_data_group.html
2169
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_resource_data_group.html
2170
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_sequence_data_assembly_data_group.html
2171
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_sequence_data_group.html
2172
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_text_data_group.html
2173
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_tool_data_group.html
2174
%%PORTDOCS%%%%DOCSDIR%%/programs/html/data_retrieval_url_data_group.html
2175
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbtell.html
2176
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxcompress.html
2177
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxedam.html
2178
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxobo.html
2179
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxreport.html
2180
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxresource.html
2181
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxstat.html
2182
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxtax.html
2183
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxuncompress.html
2184
%%PORTDOCS%%%%DOCSDIR%%/programs/html/density.1.density.gif
2185
%%PORTDOCS%%%%DOCSDIR%%/programs/html/density.2.density.gif
2186
%%PORTDOCS%%%%DOCSDIR%%/programs/html/density.3.density.gif
2187
%%PORTDOCS%%%%DOCSDIR%%/programs/html/documentation_group.html
2188
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drfinddata.html
2189
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drfindformat.html
2190
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drfindid.html
2191
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drfindresource.html
2192
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drget.html
2193
%%PORTDOCS%%%%DOCSDIR%%/programs/html/drtext.html
2194
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamdef.html
2195
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamhasinput.html
2196
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamhasoutput.html
2197
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamisformat.html
2198
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamisid.html
2199
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edamname.html
2200
%%PORTDOCS%%%%DOCSDIR%%/programs/html/embossupdate.html
2201
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprimer32.html
2202
%%PORTDOCS%%%%DOCSDIR%%/programs/html/featmerge.html
2203
%%PORTDOCS%%%%DOCSDIR%%/programs/html/feattext.html
2204
%%PORTDOCS%%%%DOCSDIR%%/programs/html/godef.html
2205
%%PORTDOCS%%%%DOCSDIR%%/programs/html/goname.html
2206
%%PORTDOCS%%%%DOCSDIR%%/programs/html/infoassembly.html
2207
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_functional_sites_group.html
2208
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_properties_group.html
2209
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontocount.html
2210
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontoget.html
2211
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetcommon.html
2212
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetdown.html
2213
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetobsolete.html
2214
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetroot.html
2215
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetsibs.html
2216
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontogetup.html
2217
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontoisobsolete.html
2218
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontology_edam_group.html
2219
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontology_go_group.html
2220
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontology_group.html
2221
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontology_taxonomy_group.html
2222
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ontotext.html
2223
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepdigest.html
2224
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_domains_group.html
2225
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_functional_sites_group.html
2226
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_modifications_group.html
2227
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_properties_group.html
2228
%%PORTDOCS%%%%DOCSDIR%%/programs/html/refseqget.html
2229
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqcount.html
2230
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqxref.html
2231
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqxrefget.html
2232
%%PORTDOCS%%%%DOCSDIR%%/programs/html/servertell.html
2233
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showserver.html
2234
%%PORTDOCS%%%%DOCSDIR%%/programs/html/taxget.html
2235
%%PORTDOCS%%%%DOCSDIR%%/programs/html/taxgetdown.html
2236
%%PORTDOCS%%%%DOCSDIR%%/programs/html/taxgetrank.html
2237
%%PORTDOCS%%%%DOCSDIR%%/programs/html/taxgetspecies.html
2238
%%PORTDOCS%%%%DOCSDIR%%/programs/html/taxgetup.html
2239
%%PORTDOCS%%%%DOCSDIR%%/programs/html/textget.html
2240
%%PORTDOCS%%%%DOCSDIR%%/programs/html/urlget.html
2241
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_group.html
2242
%%PORTDOCS%%%%DOCSDIR%%/programs/html/variationget.html
2243
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossdata.html
2244
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossinput.html
2245
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossoperation.html
2246
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossoutput.html
2247
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossparam.html
2248
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wosstopic.html
2249
%%PORTDOCS%%%%DOCSDIR%%/programs/html/xmlget.html
2250
%%PORTDOCS%%%%DOCSDIR%%/programs/html/xmltext.html
2251
%%PORTDOCS%%%%DOCSDIR%%/programs/text/assemblyget.txt
2252
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cachedas.txt
2253
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cachedbfetch.txt
2254
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cacheebeyesearch.txt
2255
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cacheensembl.txt
2256
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbtell.txt
2257
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxcompress.txt
2258
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxedam.txt
2259
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxobo.txt
2260
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxreport.txt
2261
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxresource.txt
2262
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxstat.txt
2263
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxtax.txt
2264
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxuncompress.txt
2265
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drfinddata.txt
2266
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drfindformat.txt
2267
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drfindid.txt
2268
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drfindresource.txt
2269
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drget.txt
2270
%%PORTDOCS%%%%DOCSDIR%%/programs/text/drtext.txt
2271
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamdef.txt
2272
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamhasinput.txt
2273
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamhasoutput.txt
2274
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamisformat.txt
2275
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamisid.txt
2276
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edamname.txt
2277
%%PORTDOCS%%%%DOCSDIR%%/programs/text/embossupdate.txt
2278
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eprimer32.txt
2279
%%PORTDOCS%%%%DOCSDIR%%/programs/text/featmerge.txt
2280
%%PORTDOCS%%%%DOCSDIR%%/programs/text/feattext.txt
2281
%%PORTDOCS%%%%DOCSDIR%%/programs/text/godef.txt
2282
%%PORTDOCS%%%%DOCSDIR%%/programs/text/goname.txt
2283
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infoassembly.txt
2284
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontocount.txt
2285
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontoget.txt
2286
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetcommon.txt
2287
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetdown.txt
2288
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetobsolete.txt
2289
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetroot.txt
2290
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetsibs.txt
2291
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontogetup.txt
2292
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontoisobsolete.txt
2293
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ontotext.txt
2294
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepdigest.txt
2295
%%PORTDOCS%%%%DOCSDIR%%/programs/text/refseqget.txt
2296
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqcount.txt
2297
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqxref.txt
2298
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqxrefget.txt
2299
%%PORTDOCS%%%%DOCSDIR%%/programs/text/servertell.txt
2300
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showserver.txt
2301
%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxget.txt
2302
%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetdown.txt
2303
%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetrank.txt
2304
%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetspecies.txt
2305
%%PORTDOCS%%%%DOCSDIR%%/programs/text/taxgetup.txt
2306
%%PORTDOCS%%%%DOCSDIR%%/programs/text/textget.txt
2307
%%PORTDOCS%%%%DOCSDIR%%/programs/text/urlget.txt
2308
%%PORTDOCS%%%%DOCSDIR%%/programs/text/variationget.txt
2309
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossdata.txt
2310
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossinput.txt
2311
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossoperation.txt
2312
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossoutput.txt
2313
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossparam.txt
2314
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wosstopic.txt
2315
%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmlget.txt
2316
%%PORTDOCS%%%%DOCSDIR%%/programs/text/xmltext.txt
1988
@dirrm bin
2317
@dirrm bin
2318
@dirrm include/ezlib
1989
@dirrm include/eplplot
2319
@dirrm include/eplplot
2320
@dirrm include/epcre
2321
@dirrm include/eexpat
1990
@dirrm include
2322
@dirrm include
1991
@dirrm lib
2323
@dirrm lib
1992
@dirrm %%DATADIR%%/acd
2324
@dirrm %%DATADIR%%/acd
Lines 1996-2045 Link Here
1996
@dirrm %%DATADIR%%/data/JASPAR_CORE
2328
@dirrm %%DATADIR%%/data/JASPAR_CORE
1997
@dirrm %%DATADIR%%/data/JASPAR_FAM
2329
@dirrm %%DATADIR%%/data/JASPAR_FAM
1998
@dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS
2330
@dirrm %%DATADIR%%/data/JASPAR_PHYLOFACTS
2331
@dirrm %%DATADIR%%/data/JASPAR_PBM
2332
@dirrm %%DATADIR%%/data/JASPAR_PBM_HLH
2333
@dirrm %%DATADIR%%/data/JASPAR_PBM_HOMEO
1999
@dirrm %%DATADIR%%/data/JASPAR_POLII
2334
@dirrm %%DATADIR%%/data/JASPAR_POLII
2000
@dirrm %%DATADIR%%/data/JASPAR_SPLICE
2335
@dirrm %%DATADIR%%/data/JASPAR_SPLICE
2336
@dirrm %%DATADIR%%/data/OBO
2001
@dirrm %%DATADIR%%/data/PRINTS
2337
@dirrm %%DATADIR%%/data/PRINTS
2002
@dirrm %%DATADIR%%/data/PROSITE
2338
@dirrm %%DATADIR%%/data/PROSITE
2003
@dirrm %%DATADIR%%/data/REBASE
2339
@dirrm %%DATADIR%%/data/REBASE
2340
@dirrm %%DATADIR%%/data/TAXONOMY
2004
@dirrm %%DATADIR%%/data
2341
@dirrm %%DATADIR%%/data
2005
@dirrm %%DOCSDIR%%/manuals
2342
@dirrm %%DATADIR%%/index
2006
@dirrm %%DOCSDIR%%/programs/html
2007
@dirrm %%DOCSDIR%%/programs/text
2008
@dirrm %%DOCSDIR%%/programs
2009
@dirrm %%DOCSDIR%%/tutorials
2010
@dirrm %%DOCSDIR%%
2011
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
2012
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
2013
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
2014
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup
2015
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui
2016
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd
2017
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser
2018
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/programs
2019
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/soap
2020
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss
2021
@dirrm %%DATADIR%%/jemboss/api/org/emboss
2022
@dirrm %%DATADIR%%/jemboss/api/org
2023
@dirrm %%DATADIR%%/jemboss/api
2024
@dirrm %%DATADIR%%/jemboss/images
2343
@dirrm %%DATADIR%%/jemboss/images
2025
@dirrm %%DATADIR%%/jemboss/lib/axis
2344
@dirrm %%DATADIR%%/jemboss/lib/axis
2026
@dirrm %%DATADIR%%/jemboss/lib
2345
@dirrm %%DATADIR%%/jemboss/lib
2027
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw
2028
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor
2029
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics
2030
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree
2031
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form
2032
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser
2033
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup
2034
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui
2035
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd
2036
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser
2037
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/programs
2038
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/server
2039
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/soap
2040
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss
2041
@dirrm %%DATADIR%%/jemboss/org/emboss
2042
@dirrm %%DATADIR%%/jemboss/org
2043
@dirrm %%DATADIR%%/jemboss/resources
2346
@dirrm %%DATADIR%%/jemboss/resources
2044
@dirrm %%DATADIR%%/jemboss/utils
2347
@dirrm %%DATADIR%%/jemboss/utils
2045
@dirrm %%DATADIR%%/jemboss
2348
@dirrm %%DATADIR%%/jemboss
Lines 2051-2055 Link Here
2051
@dirrm %%DATADIR%%/test/swnew
2354
@dirrm %%DATADIR%%/test/swnew
2052
@dirrm %%DATADIR%%/test/testdb
2355
@dirrm %%DATADIR%%/test/testdb
2053
@dirrm %%DATADIR%%/test
2356
@dirrm %%DATADIR%%/test
2054
@dirrm %%DATADIR%%
2357
@dirrmtry %%DATADIR%%
2358
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
2359
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/html
2360
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
2361
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
2362
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
2363
%%PORTDOCS%%@dirrm %%DOCSDIR%%
2055
@dirrmtry share
2364
@dirrmtry share

Return to bug 190508