Attachment 147525 Details for Bug 193531 – New patch taking account of your remarks

[patch] New patch taking account of your remarks

elmerfem-2.diff (text/plain), 28.34 KB, created by Thierry Thomas on 2014-09-21 14:20:34 UTC

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Filename:

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Creator: Thierry Thomas

Created: 2014-09-21 14:20:34 UTC

Size: 28.34 KB

patch

obsolete

>diff -urN cad/elmerfem.orig/Makefile cad/elmerfem/Makefile
>--- cad/elmerfem.orig/Makefile	2014-09-20 15:53:50.000000000 +0200
>+++ cad/elmerfem/Makefile	2014-09-21 16:00:27.000000000 +0200
>@@ -14,17 +14,16 @@
> LICENSE=	GPLv2
> 
> LIB_DEPENDS=	liblapack.so:${PORTSDIR}/math/lapack	\
>-		libarpack.so:${PORTSDIR}/math/arpack
>+		libparpack.so:${PORTSDIR}/math/arpack-ng\
>+		libmpich.so.8:${PORTSDIR}/net/mpich2
> 
> SVNVERSION=	6855
> 
>-USES=		dos2unix fortran zip gmake tcl
>+USES=		cmake dos2unix fortran zip gmake tcl
> 
> USE_LDCONFIG=	yes
> ALL_TARGET=
> 
>-ELMER_HOME=	${STAGEDIR}${PREFIX}/elmer
>-
> .include <bsd.port.pre.mk>
> 
> .if ${ARCH} == "amd64" || ${ARCH} == "ia64"
>@@ -36,27 +35,16 @@
> LDFLAGS+=	-L${LOCALBASE}/lib
> FCPPFLAGS+=	-ansi
> 
>-GNU_CONFIGURE=	yes
>-CONFIGURE_ENV+=	CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}"
>-CONFIGURE_ENV+=	FCPPFLAGS="${FCPPFLAGS}" FCFLAGS="${FCFLAGS}"
>-CONFIGURE_ENV+=	FFLAGS="${FFLAGS}"
>-CONFIGURE_ENV+=	BLAS_LIBS="-L${LOCALBASE}/lib -lblas"
>-CONFIGURE_ENV+=	LAPACK_LIBS="-L${LOCALBASE}/lib -llapack"
>-CONFIGURE_ENV+=	ARPACK_LIBS="-L${LOCALBASE}/lib -larpack"
>-
>-ELMER_MODULES=	matc umfpack elmergrid meshgen2d eio hutiter fem post
>-
>-NO_BUILD=	"Cheat: the build procedure wants to do everything."
>-
>-do-configure:
>-
>-do-install:
>-.for m in ${ELMER_MODULES}
>-	@cd ${WRKSRC}/$m;	\
>-	${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} --prefix=${ELMER_HOME}  && 	\
>-	${SETENV} ${MAKE_ENV} ${MAKE_CMD} clean &&	\
>-	${SETENV} ${MAKE_ENV} ${MAKE_CMD} &&	\
>-	${MAKE} ${INSTALL_TARGET}
>+post-install:
>+	# To avoid conflict with SuiteSparse
>+.for mod in amd umfpack
>+	${RM} ${STAGEDIR}/${PREFIX}/lib/lib${mod}.a
> .endfor
>+	${STRIP_CMD} ${STAGEDIR}/${PREFIX}/bin/ElmerGrid
>+
>+.if defined(MAINTAINER_MODE)
>+regression-test: install
>+	cd ${WRKSRC} && LD_LIBRARY_PATH=${PREFIX}/share/elmersolver/lib ${MAKE_CMD} test/fast
>+.endif
> 
> .include <bsd.port.post.mk>
>diff -urN cad/elmerfem.orig/files/patch-CMakeLists.txt cad/elmerfem/files/patch-CMakeLists.txt
>--- cad/elmerfem.orig/files/patch-CMakeLists.txt	1970-01-01 01:00:00.000000000 +0100
>+++ cad/elmerfem/files/patch-CMakeLists.txt	2014-09-21 14:56:48.000000000 +0200
>@@ -0,0 +1,11 @@
>+--- CMakeLists.txt.orig	2014-09-21 14:50:21.000000000 +0200
>++++ CMakeLists.txt	2014-09-21 14:56:31.000000000 +0200
>+@@ -56,7 +56,7 @@
>+ ADD_SUBDIRECTORY(eio)
>+ ADD_SUBDIRECTORY(matc)
>+ ADD_SUBDIRECTORY(fem)
>+-ADD_SUBDIRECTORY(mathlibs)
>++#ADD_SUBDIRECTORY(mathlibs)
>+ ADD_SUBDIRECTORY(elmergrid)
>+ 
>+ MESSAGE(STATUS "------------------------------------------------")
>diff -urN cad/elmerfem.orig/pkg-plist cad/elmerfem/pkg-plist
>--- cad/elmerfem.orig/pkg-plist	2014-09-20 15:47:39.000000000 +0200
>+++ cad/elmerfem/pkg-plist	2014-09-21 15:58:49.000000000 +0200
>@@ -1,499 +1,102 @@
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>-elmer/bin/QueryGLXExt
>-elmer/bin/SC2Elmer
>-elmer/bin/ViewFactors
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>-elmer/bin/elmerf90-nosh
>-elmer/bin/elmerld
>-elmer/bin/matc
>-elmer/bin/sico2elmer
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>-elmer/include/umfpack.h
>-elmer/lib/libamd.a
>-elmer/lib/libamdf77.a
>-elmer/lib/libeioc.a
>-elmer/lib/libeiof.a
>-elmer/lib/libelmersolver-7.0.so
>-elmer/lib/libelmersolver.so
>-elmer/lib/libhuti.a
>-elmer/lib/libmatc.a
>-elmer/lib/libumfpack.a
>-elmer/share/elmerpost/fonts/TrueType/AUTHORS
>-elmer/share/elmerpost/fonts/TrueType/COPYING
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>-elmer/share/elmerpost/tcl/sphere.tcl
>-elmer/share/elmerpost/tcl/text.tcl
>-elmer/share/elmerpost/tcl/timestep.tcl
>-elmer/share/elmerpost/tcl/vectors.tcl
>-elmer/share/elmersolver/include/adaptive.mod
>-elmer/share/elmersolver/include/ascbinoutpututils.mod
>-elmer/share/elmersolver/include/bandmatrix.mod
>-elmer/share/elmersolver/include/bandwidthoptimize.mod
>-elmer/share/elmersolver/include/binio.mod
>-elmer/share/elmersolver/include/blocksolve.mod
>-elmer/share/elmersolver/include/clusteringmethods.mod
>-elmer/share/elmersolver/include/coordinatesystems.mod
>-elmer/share/elmersolver/include/crsmatrix.mod
>-elmer/share/elmersolver/include/defutils.mod
>-elmer/share/elmersolver/include/differentials.mod
>-elmer/share/elmersolver/include/diffuseconvective.mod
>-elmer/share/elmersolver/include/diffuseconvectivegeneral.mod
>-elmer/share/elmersolver/include/directsolve.mod
>-elmer/share/elmersolver/include/dxfile.mod
>-elmer/share/elmersolver/include/eigensolve.mod
>-elmer/share/elmersolver/include/elementdescription.mod
>-elmer/share/elmersolver/include/elementutils.mod
>-elmer/share/elmersolver/include/exchangecorrelations.mod
>-elmer/share/elmersolver/include/fetisolve.mod
>-elmer/share/elmersolver/include/freesurface.mod
>-elmer/share/elmersolver/include/gebhardtfactorglobals.mod
>-elmer/share/elmersolver/include/generalutils.mod
>-elmer/share/elmersolver/include/globmat.mod
>-elmer/share/elmersolver/include/globmatc.mod
>-elmer/share/elmersolver/include/hashtable.mod
>-elmer/share/elmersolver/include/integration.mod
>-elmer/share/elmersolver/include/interpolation.mod
>-elmer/share/elmersolver/include/iso_varying_string.mod
>-elmer/share/elmersolver/include/iterativemethods.mod
>-elmer/share/elmersolver/include/itersolve.mod
>-elmer/share/elmersolver/include/kinds.mod
>-elmer/share/elmersolver/include/linearalgebra.mod
>-elmer/share/elmersolver/include/listmatrix.mod
>-elmer/share/elmersolver/include/lists.mod
>-elmer/share/elmersolver/include/ludecomposition.mod
>-elmer/share/elmersolver/include/magnetodynamicsutils.mod
>-elmer/share/elmersolver/include/mainutils.mod
>-elmer/share/elmersolver/include/materialmodels.mod
>-elmer/share/elmersolver/include/maxwell.mod
>-elmer/share/elmersolver/include/maxwellaxis.mod
>-elmer/share/elmersolver/include/maxwellgeneral.mod
>-elmer/share/elmersolver/include/meshutils.mod
>-elmer/share/elmersolver/include/messages.mod
>-elmer/share/elmersolver/include/modeldescription.mod
>-elmer/share/elmersolver/include/multigrid.mod
>-elmer/share/elmersolver/include/navierstokes.mod
>-elmer/share/elmersolver/include/navierstokescylindrical.mod
>-elmer/share/elmersolver/include/navierstokesgeneral.mod
>-elmer/share/elmersolver/include/paralleleigensolve.mod
>-elmer/share/elmersolver/include/parallelutils.mod
>-elmer/share/elmersolver/include/particledynamicsstuff.mod
>-elmer/share/elmersolver/include/particleutils.mod
>-elmer/share/elmersolver/include/pelementbase.mod
>-elmer/share/elmersolver/include/pelementmaps.mod
>-elmer/share/elmersolver/include/porousmaterials.mod
>-elmer/share/elmersolver/include/radiation.mod
>-elmer/share/elmersolver/include/radiationfactorglobals.mod
>-elmer/share/elmersolver/include/smoothers.mod
>-elmer/share/elmersolver/include/solverutils.mod
>-elmer/share/elmersolver/include/sparitercomm.mod
>-elmer/share/elmersolver/include/spariterglobals.mod
>-elmer/share/elmersolver/include/spariterprecond.mod
>-elmer/share/elmersolver/include/sparitersolve.mod
>-elmer/share/elmersolver/include/statelecboundaryutils.mod
>-elmer/share/elmersolver/include/stressgeneral.mod
>-elmer/share/elmersolver/include/stresslocal.mod
>-elmer/share/elmersolver/include/timeintegrate.mod
>-elmer/share/elmersolver/include/types.mod
>-elmer/share/elmersolver/include/viewfactorglobals.mod
>-elmer/share/elmersolver/include/vtklegacyfile.mod
>-elmer/share/elmersolver/lib/Acoustics.so
>-elmer/share/elmersolver/lib/AdvectionDiffusion.so
>-elmer/share/elmersolver/lib/AdvectionReaction.so
>-elmer/share/elmersolver/lib/ArteryOutlet.so
>-elmer/share/elmersolver/lib/ArtificialCompressibility.so
>-elmer/share/elmersolver/lib/CompressibleNS.so
>-elmer/share/elmersolver/lib/DCRComplexSolve.so
>-elmer/share/elmersolver/lib/DFTSolver.so
>-elmer/share/elmersolver/lib/DataToFieldSolver.so
>-elmer/share/elmersolver/lib/DistanceSolve.so
>-elmer/share/elmersolver/lib/DivergenceSolver.so
>-elmer/share/elmersolver/lib/ElasticSolve.so
>-elmer/share/elmersolver/lib/ElectricForce.so
>-elmer/share/elmersolver/lib/Electrokinetics.so
>-elmer/share/elmersolver/lib/EliminateDirichlet.so
>-elmer/share/elmersolver/lib/EliminatePeriodic.so
>-elmer/share/elmersolver/lib/EnergyRelease.so
>-elmer/share/elmersolver/lib/FDiffusion.so
>-elmer/share/elmersolver/lib/FDiffusion3D.so
>-elmer/share/elmersolver/lib/FilterTimeSeries.so
>-elmer/share/elmersolver/lib/FindOptimum.so
>-elmer/share/elmersolver/lib/FlowSolve.so
>-elmer/share/elmersolver/lib/FluidicForce.so
>-elmer/share/elmersolver/lib/FluxSolver.so
>-elmer/share/elmersolver/lib/FreeSurfaceReduced.so
>-elmer/share/elmersolver/lib/FreeSurfaceSolver.so
>-elmer/share/elmersolver/lib/HeatSolve.so
>-elmer/share/elmersolver/lib/HelmholtzBEM.so
>-elmer/share/elmersolver/lib/HelmholtzSolve.so
>-elmer/share/elmersolver/lib/Isosurface.so
>-elmer/share/elmersolver/lib/KESolver.so
>-elmer/share/elmersolver/lib/Komega.so
>-elmer/share/elmersolver/lib/LevelSet.so
>-elmer/share/elmersolver/lib/MagneticSolve.so
>-elmer/share/elmersolver/lib/MagnetoDynamics.so
>-elmer/share/elmersolver/lib/MagnetoDynamics2D.so
>-elmer/share/elmersolver/lib/MeshSolve.so
>-elmer/share/elmersolver/lib/MovingElstatSolver.so
>-elmer/share/elmersolver/lib/NonphysicalMeshSolve.so
>-elmer/share/elmersolver/lib/NormalSolver.so
>-elmer/share/elmersolver/lib/ParticleAdvector.so
>-elmer/share/elmersolver/lib/ParticleDynamics.so
>-elmer/share/elmersolver/lib/PhaseChangeSolve.so
>-elmer/share/elmersolver/lib/PoissonBEM.so
>-elmer/share/elmersolver/lib/PoissonBoltzmannSolve.so
>-elmer/share/elmersolver/lib/RateOfChange.so
>-elmer/share/elmersolver/lib/ReloadData.so
>-elmer/share/elmersolver/lib/ReloadInput.so
>-elmer/share/elmersolver/lib/ResultOutputSolve.so
>-elmer/share/elmersolver/lib/ReynoldsSolver.so
>-elmer/share/elmersolver/lib/RichardsSolver.so
>-elmer/share/elmersolver/lib/RigidBodyReduction.so
>-elmer/share/elmersolver/lib/RigidMeshMapper.so
>-elmer/share/elmersolver/lib/SOLVER.KEYWORDS
>-elmer/share/elmersolver/lib/SSTKomega.so
>-elmer/share/elmersolver/lib/SaveData.so
>-elmer/share/elmersolver/lib/SaveGridData.so
>-elmer/share/elmersolver/lib/ScalarPotentialSolver.so
>-elmer/share/elmersolver/lib/ShallowWaterNS.so
>-elmer/share/elmersolver/lib/ShearrateSolver.so
>-elmer/share/elmersolver/lib/ShellSolve.so
>-elmer/share/elmersolver/lib/Smitc.so
>-elmer/share/elmersolver/lib/Spalart-Allmaras.so
>-elmer/share/elmersolver/lib/StatCurrentSolve.so
>-elmer/share/elmersolver/lib/StatElecBoundary.so
>-elmer/share/elmersolver/lib/StatElecSolve.so
>-elmer/share/elmersolver/lib/StatMagSolve.so
>-elmer/share/elmersolver/lib/SteadyPhaseChange.so
>-elmer/share/elmersolver/lib/Stokes.so
>-elmer/share/elmersolver/lib/StreamSolver.so
>-elmer/share/elmersolver/lib/StressSolve.so
>-elmer/share/elmersolver/lib/StructuredFlowLine.so
>-elmer/share/elmersolver/lib/StructuredMeshMapper.so
>-elmer/share/elmersolver/lib/StructuredProjectToPlane.so
>-elmer/share/elmersolver/lib/ThermoElectricSolver.so
>-elmer/share/elmersolver/lib/TransientPhaseChange.so
>-elmer/share/elmersolver/lib/TransportEquation.so
>-elmer/share/elmersolver/lib/V2FSolver.so
>-elmer/share/elmersolver/lib/VorticitySolver.so
>-elmer/share/elmersolver/lib/elements.def
>-@dirrmtry elmer/bin
>-@dirrmtry elmer/include/elmer
>-@dirrmtry elmer/include
>-@dirrmtry elmer/lib
>-@dirrmtry elmer/share/elmerpost/fonts/TrueType
>-@dirrmtry elmer/share/elmerpost/fonts
>-@dirrmtry elmer/share/elmerpost/help/figs
>-@dirrmtry elmer/share/elmerpost/help/html_library-0.3
>-@dirrmtry elmer/share/elmerpost/help/matc/lh-figs
>-@dirrmtry elmer/share/elmerpost/help/matc
>-@dirrmtry elmer/share/elmerpost/help
>-@dirrmtry elmer/share/elmerpost/lib/cameras
>-@dirrmtry elmer/share/elmerpost/lib/colormaps
>-@dirrmtry elmer/share/elmerpost/lib/images
>-@dirrmtry elmer/share/elmerpost/lib
>-@dirrmtry elmer/share/elmerpost/modules
>-@dirrmtry elmer/share/elmerpost/tcl
>-@dirrmtry elmer/share/elmerpost
>-@dirrmtry elmer/share/elmersolver/include
>-@dirrmtry elmer/share/elmersolver/lib
>-@dirrmtry elmer/share/elmersolver
>-@dirrmtry elmer/share
>-@dirrmtry elmer
>+bin/ElmerGrid
>+bin/ElmerSolver_mpi
>+bin/elmerf90
>+bin/matc
>+lib/libamdf77.a
>+lib/libbinio.so
>+lib/libelmersolver.so
>+lib/libhuti.so
>+lib/libmatc.so
>+share/elmersolver/lib/Acoustics.so
>+share/elmersolver/lib/AdvectionDiffusion.so
>+share/elmersolver/lib/AdvectionReaction.so
>+share/elmersolver/lib/ArteryOutlet.so
>+share/elmersolver/lib/ArtificialCompressibility.so
>+share/elmersolver/lib/CoilSolver.so
>+share/elmersolver/lib/CompressibleNS.so
>+share/elmersolver/lib/CoupledNSUpdate.so
>+share/elmersolver/lib/DCRComplexSolve.so
>+share/elmersolver/lib/DFTSolver.so
>+share/elmersolver/lib/DataToFieldSolver.so
>+share/elmersolver/lib/DistanceSolve.so
>+share/elmersolver/lib/DivProjection.so
>+share/elmersolver/lib/DivergenceSolver.so
>+share/elmersolver/lib/ElasticSolve.so
>+share/elmersolver/lib/ElectricForce.so
>+share/elmersolver/lib/Electrokinetics.so
>+share/elmersolver/lib/ElementSizeSolver.so
>+share/elmersolver/lib/EliminateDirichlet.so
>+share/elmersolver/lib/EliminatePeriodic.so
>+share/elmersolver/lib/EnergyRelease.so
>+share/elmersolver/lib/FDiffusion.so
>+share/elmersolver/lib/FDiffusion3D.so
>+share/elmersolver/lib/FilterTimeSeries.so
>+share/elmersolver/lib/FindOptimum.so
>+share/elmersolver/lib/FlowSolve.so
>+share/elmersolver/lib/FluidicForce.so
>+share/elmersolver/lib/FluxSolver.so
>+share/elmersolver/lib/FreeSurfaceReduced.so
>+share/elmersolver/lib/FreeSurfaceSolver.so
>+share/elmersolver/lib/HeatSolve.so
>+share/elmersolver/lib/HelmholtzBEM.so
>+share/elmersolver/lib/HelmholtzSolve.so
>+share/elmersolver/lib/Isosurface.so
>+share/elmersolver/lib/KESolver.so
>+share/elmersolver/lib/Komega.so
>+share/elmersolver/lib/LevelSet.so
>+share/elmersolver/lib/MagneticSolve.so
>+share/elmersolver/lib/MagnetoDynamics.so
>+share/elmersolver/lib/MagnetoDynamics2D.so
>+share/elmersolver/lib/MeshSolve.so
>+share/elmersolver/lib/ModelPDE.so
>+share/elmersolver/lib/MovingElstatSolver.so
>+share/elmersolver/lib/NonphysicalMeshSolve.so
>+share/elmersolver/lib/NormalSolver.so
>+share/elmersolver/lib/ParStokes.so
>+share/elmersolver/lib/ParticleAdvector.so
>+share/elmersolver/lib/ParticleDynamics.so
>+share/elmersolver/lib/PhaseChangeSolve.so
>+share/elmersolver/lib/PoissonBEM.so
>+share/elmersolver/lib/PoissonBoltzmannSolve.so
>+share/elmersolver/lib/PressurePrecond.so
>+share/elmersolver/lib/PressureUpdate.so
>+share/elmersolver/lib/ProjectToPlane.so
>+share/elmersolver/lib/RateOfChange.so
>+share/elmersolver/lib/ReloadData.so
>+share/elmersolver/lib/ReloadInput.so
>+share/elmersolver/lib/ResultOutputSolve.so
>+share/elmersolver/lib/ReynoldsSolver.so
>+share/elmersolver/lib/RichardsSolver.so
>+share/elmersolver/lib/RigidBodyReduction.so
>+share/elmersolver/lib/RigidMeshMapper.so
>+share/elmersolver/lib/SOLVER.KEYWORDS
>+share/elmersolver/lib/SSTKomega.so
>+share/elmersolver/lib/SaveData.so
>+share/elmersolver/lib/SaveGridData.so
>+share/elmersolver/lib/ScalarPotentialSolver.so
>+share/elmersolver/lib/ShallowWaterNS.so
>+share/elmersolver/lib/ShearrateSolver.so
>+share/elmersolver/lib/ShellSolve.so
>+share/elmersolver/lib/Smitc.so
>+share/elmersolver/lib/Spalart-Allmaras.so
>+share/elmersolver/lib/StatCurrentSolve.so
>+share/elmersolver/lib/StatElecBoundary.so
>+share/elmersolver/lib/StatElecSolve.so
>+share/elmersolver/lib/StatMagSolve.so
>+share/elmersolver/lib/SteadyPhaseChange.so
>+share/elmersolver/lib/Stokes.so
>+share/elmersolver/lib/StreamSolver.so
>+share/elmersolver/lib/StressSolve.so
>+share/elmersolver/lib/StructuredFlowLine.so
>+share/elmersolver/lib/StructuredMeshMapper.so
>+share/elmersolver/lib/StructuredProjectToPlane.so
>+share/elmersolver/lib/ThermoElectricSolver.so
>+share/elmersolver/lib/TransientPhaseChange.so
>+share/elmersolver/lib/TransportEquation.so
>+share/elmersolver/lib/V2FSolver.so
>+share/elmersolver/lib/VelocityPrecond.so
>+share/elmersolver/lib/ViscousCompressibility.so
>+share/elmersolver/lib/VorticitySolver.so
>+share/elmersolver/lib/elements.def
>+@dirrm share/elmersolver/lib
>+@dirrm share/elmersolver

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Attachments on bug 193531: 147181 | 147503 | 147525 | 147703 | 147859 | 147865 | 147866 | 148047 | 148049 | 148050