FreeBSD Bugzilla – Attachment 155058 Details for
Bug 199066
[maintainer update] biology/hmmer: Clean up and adopt
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Unified diff
hmmer-diff.txt (text/plain), 1.87 KB, created by
Jason W. Bacon
on 2015-03-31 13:58:05 UTC
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Unified diff
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Creator:
Jason W. Bacon
Created:
2015-03-31 13:58:05 UTC
Size:
1.87 KB
patch
obsolete
>diff -ruN --exclude=CVS --exclude=.svn /usr/ports/biology/hmmer/Makefile /usr/wip/biology/hmmer/Makefile >--- /usr/ports/biology/hmmer/Makefile 2014-07-15 09:54:54.000000000 -0500 >+++ /usr/wip/biology/hmmer/Makefile 2015-03-31 08:50:02.000000000 -0500 >@@ -7,33 +7,38 @@ > MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \ > http://selab.janelia.org/software/hmmer3/3.0/ > >-MAINTAINER= ports@FreeBSD.org >+MAINTAINER= jwbacon@tds.net > COMMENT= Profile hidden Markov models for biological sequence analysis > >+LICENSE= GPLv3 >+ > GNU_CONFIGURE= yes > USES= perl5 >-CONFIGURE_ARGS+=--enable-threads --enable-lfs >+CONFIGURE_ARGS+=--enable-threads > > DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf > EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \ > HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \ > Pkinase.hmm fn3.out globins4.out minifam minifam.h3m > >-OPTIONS_DEFINE= PVM DOCS EXAMPLES >-PVM_DESC= PVM support >+OPTIONS_DEFINE= DOCS EXAMPLES >+ >+.include <bsd.port.options.mk> > >-PVM_CONFIGURE_ENV= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD" >-PVM_CONFIGURE_WITH= pvm >-PVM_BUILD_DEPENDS= pvm:${PORTSDIR}/net/pvm >+# HMMER is useless without SSE and any PC in use today should support it >+# Should probably also do enable-vmx on Power processors to enable >+# Altivec/VMX, but I don't have a machine to test this. >+.if ${ARCH} == "amd64" || ${ARCH} == "ia64" || ${ARCH} == "i386" >+CONFIGURE_ARGS+=--enable-sse >+.endif > > post-install: >+ @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/* > (cd ${WRKSRC}/documentation/man; for i in *.man; do \ > ${INSTALL_MAN} $$i ${STAGEDIR}${PREFIX}/man/man1/`echo $$i|${SED} 's/.man/.1/'`; \ > done) >- > @${MKDIR} ${STAGEDIR}${DOCSDIR} > ${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR} >- > @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} > ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR} >
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bug 199066
: 155058