Attachment 161157 Details for Bug 203183 – Shar archive

Shar archive

cd-hit-shar.txt (text/plain), 2.74 KB, created by Jason W. Bacon on 2015-09-17 23:50:59 UTC

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Creator: Jason W. Bacon

Created: 2015-09-17 23:50:59 UTC

Size: 2.74 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	cd-hit
>#	cd-hit/Makefile
>#	cd-hit/distinfo
>#	cd-hit/pkg-descr
>#	cd-hit/pkg-plist
>#
>echo c - cd-hit
>mkdir -p cd-hit > /dev/null 2>&1
>echo x - cd-hit/Makefile
>sed 's/^X//' >cd-hit/Makefile << '5ac71be5acc21f4c1392822538d42fda'
>X# Created by: Jason Bacon <jwbacon@tds.net>
>X# $FreeBSD$
>X
>XPORTNAME=	cd-hit
>XPORTVERSION=	4.6.4
>XCATEGORIES=	biology
>XMASTER_SITES=	https://github.com/weizhongli/cdhit/releases/download/V${PORTVERSION}/
>XDISTNAME=	${PORTNAME}-v${PORTVERSION}-2015-0603
>X
>XMAINTAINER=	jwbacon@tds.net
>XCOMMENT=	Clustering and comparing protein or nucleotide sequences
>X
>XLICENSE=	GPLv2
>X
>XUSES=		gmake shebangfix
>X# Only for OpenMP
>XUSE_GCC=	yes
>XSHEBANG_FILES=	${WRKSRC}/*.pl
>X
>XMAKEFILE=	makefile
>XMAKE_FLAGS=	openmp=yes
>X
>Xpost-patch:
>X	@${REINPLACE_CMD} \
>X		-e 's|g++|${CXX}|g' \
>X		-e 's|\$$(PREFIX)|$${DESTDIR}$${PREFIX}/bin|g' \
>X		${WRKSRC}/${MAKEFILE}
>X	@${REINPLACE_CMD} \
>X		-e 's|/bin/bash|${LOCALBASE}/bin/bash|g' \
>X		${WRKSRC}/*.pl
>X
>Xpost-stage:
>X	@cd ${STAGEDIR}${PREFIX}/bin && \
>X		${STRIP_CMD} cd-hit cd-hit-2d cd-hit-454 \
>X		cd-hit-div cd-hit-est cd-hit-est-2d
>X
>X.include <bsd.port.mk>
>5ac71be5acc21f4c1392822538d42fda
>echo x - cd-hit/distinfo
>sed 's/^X//' >cd-hit/distinfo << '0443cebe81ac31de6ca4f65f406d1587'
>XSHA256 (cd-hit-v4.6.4-2015-0603.tar.gz) = ca0050b6b27649dd548b6d74c2873dd76cff7bfdf70fb6f8e8578d0fa128d92c
>XSIZE (cd-hit-v4.6.4-2015-0603.tar.gz) = 1150522
>0443cebe81ac31de6ca4f65f406d1587
>echo x - cd-hit/pkg-descr
>sed 's/^X//' >cd-hit/pkg-descr << '0076b60b25b982d2d00557219de6373a'
>XCD-HIT is a very widely used program for clustering and comparing protein or
>Xnucleotide sequences.
>X
>XWWW: http://weizhong-lab.ucsd.edu/cd-hit/
>0076b60b25b982d2d00557219de6373a
>echo x - cd-hit/pkg-plist
>sed 's/^X//' >cd-hit/pkg-plist << 'ad05769994a85ac4ed59c9873c1253f5'
>Xbin/cd-hit
>Xbin/cd-hit-2d
>Xbin/cd-hit-2d-para.pl
>Xbin/cd-hit-454
>Xbin/cd-hit-div
>Xbin/cd-hit-div.pl
>Xbin/cd-hit-est
>Xbin/cd-hit-est-2d
>Xbin/cd-hit-para.pl
>Xbin/clstr2tree.pl
>Xbin/clstr2txt.pl
>Xbin/clstr2xml.pl
>Xbin/clstr_cut.pl
>Xbin/clstr_merge.pl
>Xbin/clstr_merge_noorder.pl
>Xbin/clstr_quality_eval.pl
>Xbin/clstr_quality_eval_by_link.pl
>Xbin/clstr_reduce.pl
>Xbin/clstr_renumber.pl
>Xbin/clstr_rep.pl
>Xbin/clstr_reps_faa_rev.pl
>Xbin/clstr_rev.pl
>Xbin/clstr_select.pl
>Xbin/clstr_select_rep.pl
>Xbin/clstr_size_histogram.pl
>Xbin/clstr_size_stat.pl
>Xbin/clstr_sort_by.pl
>Xbin/clstr_sort_prot_by.pl
>Xbin/clstr_sql_tbl.pl
>Xbin/clstr_sql_tbl_sort.pl
>Xbin/make_multi_seq.pl
>Xbin/plot_2d.pl
>Xbin/plot_len1.pl
>ad05769994a85ac4ed59c9873c1253f5
>exit
>

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Attachments on bug 203183: 161157