PORTREVISION=	3

PORTREVISION=	4

LICENSE=	BSD3CLAUSE GPLv3

LICENSE=	BSD3CLAUSE

LICENSE_COMB=	multi

USES=		cmake:outsource python:build zip

USES=		zip

CMAKE_SOURCE_PATH=${WRKSRC}/cmake

NO_BUILD=	yes

MAKE_JOB_SAFE=	yes

CONFLICTS=	seqan[2-9]*

SUB_FILES=	pkg-message

PKG_MESSAGE=	${WRKDIR}/pkg-message

do-install:

	${MKDIR} ${STAGEDIR}/${PREFIX}/include/${PORTNAME}

USE_GCC=	4.8

	cd ${WRKSRC} && ${COPYTREE_SHARE} ./${PORTNAME} ${STAGEDIR}/${PREFIX}/include

	cd ${WRKSRC} && ${INSTALL_DATA} ./${PORTNAME}.h ${STAGEDIR}/${PREFIX}/include

# unsafe workaround because FreeBSD lacks logl and expl

# see "BUGS" in `man 3 math`

post-install:

post-patch:

	${MKDIR} ${STAGEDIR}${DOCSDIR}

	@${REINPLACE_CMD} -e 's|expl|exp|g' ${WRKSRC}/apps/snp_store/snp_store.h

	cd ${WRKSRC}/docs && ${COPYTREE_SHARE} ./ ${STAGEDIR}${DOCSDIR}

	@${REINPLACE_CMD} -e 's|logl|log|g' ${WRKSRC}/apps/snp_store/snp_store.h

focus on biological data. The library is licensed under the

focus on biological data.

3-clause BSD license except the applications which are GPL.

This port includes only the library, the apps have been

moved to biology/seqan-apps. This is the last release of

the version 1 API, it is highly recommended to upgrade to 

biology/seqan2.

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