# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	vcftools
#	vcftools/Makefile
#	vcftools/distinfo
#	vcftools/pkg-descr
#	vcftools/pkg-plist
#
echo c - vcftools
mkdir -p vcftools > /dev/null 2>&1
echo x - vcftools/Makefile
sed 's/^X//' >vcftools/Makefile << '0940dee1d5c0dd738a62c871f999aaa0'
X# Created by: Jason Bacon <bacon4000@gmail.com>
X# $FreeBSD$
X
XPORTNAME=	vcftools
XPORTVERSION=	0.1.14
XDISTVERSIONPREFIX=	v
XCATEGORIES=	biology
XDISTNAME=	${PORTNAME}_${PORTVERSION}
X
XMAINTAINER=	bacon4000@gmail.com
XCOMMENT=	Tools for working with VCF genomics files
X
XLICENSE=	LGPL3
X
XUSES=		autoreconf gmake perl5 pkgconfig
X
XGNU_CONFIGURE=	yes
X# No zlib.pc on 9.x
XCONFIGURE_ENV=	ZLIB_CFLAGS=" " ZLIB_LIBS="-lz"
X
XUSE_GITHUB=	yes
X
X.include <bsd.port.mk>
0940dee1d5c0dd738a62c871f999aaa0
echo x - vcftools/distinfo
sed 's/^X//' >vcftools/distinfo << 'd3a1647ec21cc59444f4291b558c7ac6'
XSHA256 (vcftools_0.1.14_GH0.tar.gz) = ba440584645e9901c1eeb6b769ccd828591f0575c73349072cde3efa77da6fdf
XSIZE (vcftools_0.1.14_GH0.tar.gz) = 241228
d3a1647ec21cc59444f4291b558c7ac6
echo x - vcftools/pkg-descr
sed 's/^X//' >vcftools/pkg-descr << '00ce65b5c138e69855fe452f0c9efdcf'
XA set of tools written in Perl and C++ for working with VCF files, such as
Xthose generated by the 1000 Genomes Project.
X
XWWW: https://github.com/vcftools/vcftools
00ce65b5c138e69855fe452f0c9efdcf
echo x - vcftools/pkg-plist
sed 's/^X//' >vcftools/pkg-plist << 'e22c373c2479f0ff2b8b1206ba2aa33b'
Xbin/fill-aa
Xbin/fill-an-ac
Xbin/fill-fs
Xbin/fill-ref-md5
Xbin/vcf-annotate
Xbin/vcf-compare
Xbin/vcf-concat
Xbin/vcf-consensus
Xbin/vcf-contrast
Xbin/vcf-convert
Xbin/vcf-fix-newlines
Xbin/vcf-fix-ploidy
Xbin/vcf-indel-stats
Xbin/vcf-isec
Xbin/vcf-merge
Xbin/vcf-phased-join
Xbin/vcf-query
Xbin/vcf-shuffle-cols
Xbin/vcf-sort
Xbin/vcf-stats
Xbin/vcf-subset
Xbin/vcf-to-tab
Xbin/vcf-tstv
Xbin/vcf-validator
Xbin/vcftools
X%%SITE_PERL%%/FaSlice.pm
X%%SITE_PERL%%/Vcf.pm
X%%SITE_PERL%%/VcfStats.pm
Xman/man1/vcftools.1.gz
e22c373c2479f0ff2b8b1206ba2aa33b
exit