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bin/dfi |
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bin/insegt |
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bin/mason |
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bin/micro_razers |
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bin/pair_align |
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bin/param_chooser |
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bin/rabema |
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bin/razers |
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bin/razers2 |
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bin/rep_sep |
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bin/sak |
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bin/seqan_tcoffee |
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bin/seqcons |
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bin/snp_store |
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bin/splazers |
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bin/stellar |
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bin/tree_recon |
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include/seqan.h |
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include/seqan/align.h |
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include/seqan/align.h |
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include/seqan/align/align_algorithms.h |
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include/seqan/align/align_base.h |
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include/seqan/align/align_base.h |
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include/seqan/align/align_cols_base.h |
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include/seqan/align/align_cols.h |
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include/seqan/align/align_dynprog.h |
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include/seqan/align/align_config.h |
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include/seqan/align/align_generated_forwards.h |
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include/seqan/align/align_hirschberg.h |
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include/seqan/align/align_iterator_base.h |
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include/seqan/align/align_iterator_base.h |
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include/seqan/align/align_local_dynprog.h |
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include/seqan/align/align_metafunctions.h |
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include/seqan/align/align_local_dynprog_banded.h |
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include/seqan/align/align_traceback.h |
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include/seqan/align/align_myers.h |
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include/seqan/align/alignment_algorithm_tags.h |
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include/seqan/align/align_trace.h |
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include/seqan/align/alignment_operations.h |
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include/seqan/align/dp_algorithm_impl.h |
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include/seqan/align/dp_band.h |
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include/seqan/align/dp_cell.h |
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include/seqan/align/dp_cell_affine.h |
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include/seqan/align/dp_cell_dynamic.h |
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include/seqan/align/dp_cell_linear.h |
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include/seqan/align/dp_context.h |
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include/seqan/align/dp_formula.h |
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include/seqan/align/dp_formula_affine.h |
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include/seqan/align/dp_formula_dynamic.h |
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include/seqan/align/dp_formula_linear.h |
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include/seqan/align/dp_matrix.h |
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include/seqan/align/dp_matrix_navigator.h |
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include/seqan/align/dp_matrix_navigator_score_matrix.h |
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include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h |
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include/seqan/align/dp_matrix_navigator_trace_matrix.h |
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include/seqan/align/dp_matrix_sparse.h |
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include/seqan/align/dp_meta_info.h |
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include/seqan/align/dp_profile.h |
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include/seqan/align/dp_scout.h |
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include/seqan/align/dp_setup.h |
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include/seqan/align/dp_trace_segment.h |
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include/seqan/align/dp_traceback_adaptor.h |
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include/seqan/align/dp_traceback_impl.h |
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include/seqan/align/evaluate_alignment.h |
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include/seqan/align/fragment.h |
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include/seqan/align/gap_anchor.h |
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include/seqan/align/gapped_value_type.h |
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include/seqan/align/gaps_anchor.h |
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include/seqan/align/gaps_array.h |
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include/seqan/align/gaps_array.h |
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include/seqan/align/gaps_base.h |
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include/seqan/align/gaps_base.h |
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include/seqan/align/gaps_iterator_anchor.h |
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include/seqan/align/gaps_iterator_array.h |
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include/seqan/align/gaps_iterator_base.h |
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include/seqan/align/gaps_iterator_base.h |
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include/seqan/align/gaps_sumlist.h |
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include/seqan/align/global_alignment_banded.h |
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include/seqan/align/hirschberg_set.h |
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include/seqan/align/global_alignment_hirschberg_impl.h |
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include/seqan/align/global_alignment_myers_hirschberg_impl.h |
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include/seqan/align/global_alignment_myers_impl.h |
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include/seqan/align/global_alignment_specialized.h |
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include/seqan/align/global_alignment_unbanded.h |
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include/seqan/align/local_alignment_banded.h |
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include/seqan/align/local_alignment_banded_waterman_eggert_impl.h |
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include/seqan/align/local_alignment_enumeration.h |
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include/seqan/align/local_alignment_enumeration_banded.h |
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include/seqan/align/local_alignment_enumeration_unbanded.h |
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include/seqan/align/local_alignment_unbanded.h |
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include/seqan/align/local_alignment_waterman_eggert_impl.h |
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include/seqan/align/matrix_base.h |
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include/seqan/align/matrix_base.h |
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include/seqan/align_extend.h |
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include/seqan/align_extend/align_extend.h |
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include/seqan/align_extend/align_extend_base.h |
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include/seqan/align_extend/dp_scout_xdrop.h |
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include/seqan/align_profile.h |
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include/seqan/align_profile/add_to_profile.h |
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include/seqan/align_profile/score_profile_seq.h |
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include/seqan/align_split.h |
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include/seqan/align_split/align_split_interface.h |
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include/seqan/align_split/dp_scout_split.h |
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include/seqan/alignment_free.h |
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include/seqan/alignment_free/af_d2.h |
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include/seqan/alignment_free/af_d2star.h |
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include/seqan/alignment_free/af_d2z.h |
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include/seqan/alignment_free/af_n2.h |
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include/seqan/alignment_free/alignment_free_base.h |
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include/seqan/alignment_free/alignment_free_comparison.h |
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include/seqan/alignment_free/kmer_functions.h |
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include/seqan/arg_parse.h |
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include/seqan/arg_parse/arg_parse_argument.h |
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include/seqan/arg_parse/arg_parse_ctd_support.h |
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include/seqan/arg_parse/arg_parse_doc.h |
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include/seqan/arg_parse/arg_parse_exceptions.h |
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include/seqan/arg_parse/arg_parse_option.h |
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include/seqan/arg_parse/arg_parse_parse.h |
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include/seqan/arg_parse/arg_parse_type_support.h |
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include/seqan/arg_parse/argument_parser.h |
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include/seqan/arg_parse/tool_doc.h |
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include/seqan/arg_parse/xml_support.h |
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include/seqan/bam_io.h |
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include/seqan/bam_io/bam_alignment_record.h |
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include/seqan/bam_io/bam_alignment_record_util.h |
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include/seqan/bam_io/bam_file.h |
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include/seqan/bam_io/bam_header_record.h |
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include/seqan/bam_io/bam_index_bai.h |
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include/seqan/bam_io/bam_io_context.h |
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include/seqan/bam_io/bam_sam_conversion.h |
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include/seqan/bam_io/bam_scanner_cache.h |
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include/seqan/bam_io/bam_tags_dict.h |
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include/seqan/bam_io/cigar.h |
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include/seqan/bam_io/read_bam.h |
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include/seqan/bam_io/read_sam.h |
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include/seqan/bam_io/write_bam.h |
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include/seqan/bam_io/write_sam.h |
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include/seqan/basic.h |
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include/seqan/basic.h |
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include/seqan/basic/basic_aggregates.h |
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include/seqan/basic/aggregate_concept.h |
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include/seqan/basic/basic_allocator_chunkpool.h |
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include/seqan/basic/allocator_chunkpool.h |
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include/seqan/basic/basic_allocator_interface.h |
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include/seqan/basic/allocator_interface.h |
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include/seqan/basic/basic_allocator_multipool.h |
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include/seqan/basic/allocator_multipool.h |
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include/seqan/basic/basic_allocator_simple.h |
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include/seqan/basic/allocator_simple.h |
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include/seqan/basic/basic_allocator_singlepool.h |
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include/seqan/basic/allocator_singlepool.h |
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include/seqan/basic/basic_allocator_to_std.h |
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include/seqan/basic/allocator_to_std.h |
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include/seqan/basic/basic_alphabet_interface.h |
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include/seqan/basic/alphabet_adapt_builtins.h |
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include/seqan/basic/basic_alphabet_interface2.h |
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include/seqan/basic/alphabet_bio.h |
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include/seqan/basic/basic_alphabet_simple.h |
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include/seqan/basic/alphabet_concept.h |
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include/seqan/basic/basic_alphabet_simple_tabs.h |
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include/seqan/basic/alphabet_math.h |
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include/seqan/basic/basic_alphabet_trait_basic.h |
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include/seqan/basic/alphabet_profile.h |
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include/seqan/basic/basic_compare.h |
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include/seqan/basic/alphabet_qualities.h |
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include/seqan/basic/basic_converter.h |
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include/seqan/basic/alphabet_residue.h |
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include/seqan/basic/basic_counted_ptr.h |
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include/seqan/basic/alphabet_residue_funcs.h |
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include/seqan/basic/alphabet_residue_tabs.h |
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include/seqan/basic/alphabet_simple_type.h |
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include/seqan/basic/alphabet_storage.h |
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include/seqan/basic/array_construct_destruct.h |
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include/seqan/basic/basic_aggregate.h |
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include/seqan/basic/basic_allocator.h |
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include/seqan/basic/basic_alphabet.h |
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include/seqan/basic/basic_concept.h |
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include/seqan/basic/basic_container.h |
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include/seqan/basic/basic_debug.h |
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include/seqan/basic/basic_debug.h |
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include/seqan/basic/basic_definition.h |
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include/seqan/basic/basic_device.h |
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include/seqan/basic/basic_forwards.h |
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include/seqan/basic/basic_exception.h |
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include/seqan/basic/basic_generated_forwards.h |
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include/seqan/basic/basic_functors.h |
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include/seqan/basic/basic_holder.h |
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include/seqan/basic/basic_fundamental.h |
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include/seqan/basic/basic_holder_dynamic.h |
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include/seqan/basic/basic_host.h |
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include/seqan/basic/basic_iterator.h |
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include/seqan/basic/basic_iterator.h |
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include/seqan/basic/basic_iterator_adapt_std.h |
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include/seqan/basic/basic_math.h |
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include/seqan/basic/basic_iterator_adaptor.h |
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include/seqan/basic/basic_iterator_base.h |
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include/seqan/basic/basic_iterator_position.h |
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include/seqan/basic/basic_iterator_simple.h |
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include/seqan/basic/basic_logvalue.h |
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include/seqan/basic/basic_metaprogramming.h |
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include/seqan/basic/basic_metaprogramming.h |
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include/seqan/basic/basic_operator.h |
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include/seqan/basic/basic_parallelism.h |
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include/seqan/basic/basic_parallelism.h |
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include/seqan/basic/basic_pointer.h |
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include/seqan/basic/basic_profchar.h |
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include/seqan/basic/basic_profile.h |
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include/seqan/basic/basic_proxy.h |
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include/seqan/basic/basic_proxy.h |
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include/seqan/basic/basic_sse2.h |
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include/seqan/basic/basic_simd_vector.h |
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include/seqan/basic/basic_tag.h |
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include/seqan/basic/basic_smart_pointer.h |
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include/seqan/basic/basic_testing.h |
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include/seqan/basic/basic_stream.h |
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include/seqan/basic/basic_transport.h |
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include/seqan/basic/basic_tangle.h |
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include/seqan/basic/basic_type.h |
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include/seqan/basic/basic_type.h |
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include/seqan/basic/basic_volatile_ptr.h |
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include/seqan/basic/basic_view.h |
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include/seqan/basic/boost_preprocessor_subset.h |
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include/seqan/basic/builtin_functions.h |
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include/seqan/basic/concept_checking.h |
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include/seqan/basic/container_concept.h |
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include/seqan/basic/debug_helper.h |
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include/seqan/basic/debug_test_system.h |
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include/seqan/basic/fundamental_chunking.h |
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include/seqan/basic/fundamental_comparison.h |
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include/seqan/basic/fundamental_concepts.h |
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include/seqan/basic/fundamental_conversion.h |
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include/seqan/basic/fundamental_metafunctions.h |
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include/seqan/basic/fundamental_tags.h |
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include/seqan/basic/fundamental_transport.h |
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include/seqan/basic/holder_base.h |
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include/seqan/basic/holder_simple.h |
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include/seqan/basic/holder_tristate.h |
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include/seqan/basic/hosted_type_interface.h |
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include/seqan/basic/iterator_adapt_pointer.h |
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include/seqan/basic/iterator_adapt_std.h |
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include/seqan/basic/iterator_adaptor.h |
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include/seqan/basic/iterator_base.h |
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include/seqan/basic/iterator_concept.h |
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include/seqan/basic/iterator_counting.h |
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include/seqan/basic/iterator_interface.h |
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include/seqan/basic/iterator_position.h |
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include/seqan/basic/iterator_range.h |
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include/seqan/basic/iterator_zip.h |
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include/seqan/basic/macro_deprecated.h |
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include/seqan/basic/math_functions.h |
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include/seqan/basic/math_log_space_value.h |
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include/seqan/basic/metaprogramming_control.h |
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include/seqan/basic/metaprogramming_enable_if.h |
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include/seqan/basic/metaprogramming_logic.h |
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include/seqan/basic/metaprogramming_math.h |
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include/seqan/basic/metaprogramming_type.h |
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include/seqan/basic/metaprogramming_type_algebra.h |
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include/seqan/basic/pair_base.h |
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include/seqan/basic/pair_bit_compressed.h |
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include/seqan/basic/pair_packed.h |
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include/seqan/basic/profiling.h |
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include/seqan/basic/property_map_concept.h |
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include/seqan/basic/proxy_base.h |
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include/seqan/basic/proxy_iterator.h |
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include/seqan/basic/test_system.h |
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include/seqan/basic/triple_base.h |
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include/seqan/basic/triple_packed.h |
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include/seqan/basic/tuple_base.h |
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include/seqan/basic/tuple_bit_compressed.h |
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include/seqan/basic/volatile_ptr.h |
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include/seqan/bed_io.h |
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include/seqan/bed_io/bed_file.h |
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include/seqan/bed_io/bed_record.h |
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include/seqan/bed_io/read_bed.h |
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include/seqan/bed_io/write_bed.h |
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include/seqan/blast.h |
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include/seqan/blast.h |
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include/seqan/blast/blast_base.h |
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include/seqan/blast/blast_base.h |
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include/seqan/blast/blast_generated_forwards.h |
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include/seqan/blast/blast_io_context.h |
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include/seqan/blast/blast_hit.h |
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include/seqan/blast/blast_record.h |
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include/seqan/blast/blast_hit_iterator.h |
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include/seqan/blast/blast_report_out.h |
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include/seqan/blast/blast_hsp.h |
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include/seqan/blast/blast_statistics.h |
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include/seqan/blast/blast_hsp_iterator.h |
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include/seqan/blast/blast_tabular.h |
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include/seqan/blast/blast_iterator.h |
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include/seqan/blast/blast_tabular_in.h |
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include/seqan/blast/blast_parsing.h |
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include/seqan/blast/blast_tabular_lowlevel.h |
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include/seqan/blast/blast_report.h |
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include/seqan/blast/blast_tabular_out.h |
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include/seqan/blast/blast_run.h |
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include/seqan/blast/blast_stream_hit.h |
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include/seqan/blast/blast_stream_hit_iterator.h |
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include/seqan/blast/blast_stream_hsp_iterator.h |
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include/seqan/blast/blast_stream_report.h |
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include/seqan/chaining.h |
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include/seqan/chaining/chain_base.h |
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include/seqan/chaining/chain_generic.h |
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include/seqan/chaining/chain_meta_fragment.h |
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include/seqan/chaining/chain_point.h |
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include/seqan/chaining/chain_wrapper_point.h |
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include/seqan/chaining/chaining_generated_forwards.h |
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include/seqan/chaining/fragment.h |
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include/seqan/chaining/geom_distribution.h |
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include/seqan/chaining/range_max_tree.h |
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include/seqan/chaining/range_tree.h |
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include/seqan/chaining/rmt_base.h |
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include/seqan/chaining/rmt_common_algos.h |
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include/seqan/chaining/rmt_compl_algos.h |
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include/seqan/chaining/rmt_def_algos.h |
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include/seqan/chaining/rmt_skip_base_element.h |
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include/seqan/chaining/rmt_skip_element.h |
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include/seqan/chaining/rt_base.h |
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include/seqan/chaining/rt_common_algos.h |
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include/seqan/chaining/rt_impl.h |
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include/seqan/chaining/rt_skip_base_element.h |
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include/seqan/chaining/rt_skip_element.h |
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include/seqan/chaining/rt_sl_base.h |
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include/seqan/chaining/rt_sl_compl_algos.h |
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include/seqan/chaining/rt_sl_def_algos.h |
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include/seqan/chaining/rt_sl_impl.h |
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include/seqan/chaining/score_chain.h |
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include/seqan/chaining/score_chain_sop.h |
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include/seqan/chaining/score_manhattan.h |
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include/seqan/chaining/score_zero.h |
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include/seqan/chaining/skip_base_element.h |
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include/seqan/chaining/skip_element.h |
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include/seqan/chaining/skip_list.h |
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include/seqan/chaining/skip_list_base.h |
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include/seqan/chaining/skip_list_dynamic.h |
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include/seqan/chaining/skip_list_impl.h |
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include/seqan/chaining/skip_list_iterator.h |
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include/seqan/chaining/skip_list_type.h |
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include/seqan/chaining/skip_pool_alloc.h |
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include/seqan/chaining/tree_chain.h |
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include/seqan/chaining/tree_chain_sop.h |
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include/seqan/chaining/tree_chain_utils.h |
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include/seqan/consensus.h |
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include/seqan/consensus.h |
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include/seqan/consensus/consensus_aligner.h |
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include/seqan/consensus/consensus_aligner_interface.h |
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include/seqan/consensus/consensus_alignment_options.h |
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include/seqan/consensus/consensus_base.h |
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include/seqan/consensus/consensus_base.h |
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include/seqan/consensus/consensus_generated_forwards.h |
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include/seqan/consensus/consensus_builder.h |
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include/seqan/consensus/consensus_library.h |
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include/seqan/consensus/consensus_library.h |
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include/seqan/consensus/consensus_realign.h |
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include/seqan/consensus/consensus_realign.h |
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include/seqan/consensus/consensus_score.h |
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include/seqan/consensus/consensus_score.h |
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include/seqan/consensus/overlap_info_computation.h |
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include/seqan/consensus/overlapper.h |
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include/seqan/file.h |
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include/seqan/file.h |
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include/seqan/file/chunk_collector.h |
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include/seqan/file/cstream.h |
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include/seqan/file/file_array.h |
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include/seqan/file/file_base.h |
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include/seqan/file/file_base.h |
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include/seqan/file/file_cstyle.h |
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include/seqan/file/file_cstyle.h |
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include/seqan/file/file_filereader.h |
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include/seqan/file/file_filereaderiterator.h |
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include/seqan/file/file_format.h |
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include/seqan/file/file_format_cgviz.h |
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include/seqan/file/file_format_embl.h |
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include/seqan/file/file_format_fasta.h |
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include/seqan/file/file_format_fasta_align.h |
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include/seqan/file/file_format_genbank.h |
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include/seqan/file/file_format_guess.h |
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include/seqan/file/file_format_mmap.h |
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include/seqan/file/file_format_raw.h |
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include/seqan/file/file_forwards.h |
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include/seqan/file/file_forwards.h |
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include/seqan/file/file_generated_forwards.h |
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include/seqan/file/file_interface.h |
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include/seqan/file/meta.h |
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include/seqan/file/stream.h |
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include/seqan/file/stream_algorithms.h |
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|
|
1751 |
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1799 |
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1800 |
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1816 |
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1817 |
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