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bin/dfi |
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bin/insegt |
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bin/mason |
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bin/micro_razers |
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bin/pair_align |
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bin/param_chooser |
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bin/rabema |
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bin/razers |
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bin/razers2 |
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bin/rep_sep |
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bin/sak |
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bin/seqan_tcoffee |
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bin/seqcons |
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bin/snp_store |
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bin/splazers |
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bin/stellar |
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bin/tree_recon |
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include/seqan.h |
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include/seqan/align.h |
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include/seqan/align.h |
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include/seqan/align/align_algorithms.h |
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include/seqan/align/align_base.h |
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include/seqan/align/align_base.h |
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include/seqan/align/align_cols_base.h |
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include/seqan/align/align_cols.h |
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include/seqan/align/align_dynprog.h |
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include/seqan/align/align_config.h |
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include/seqan/align/align_generated_forwards.h |
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include/seqan/align/align_hirschberg.h |
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include/seqan/align/align_iterator_base.h |
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include/seqan/align/align_iterator_base.h |
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include/seqan/align/align_local_dynprog.h |
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include/seqan/align/align_metafunctions.h |
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include/seqan/align/align_local_dynprog_banded.h |
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include/seqan/align/align_traceback.h |
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include/seqan/align/align_myers.h |
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include/seqan/align/alignment_algorithm_tags.h |
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include/seqan/align/align_trace.h |
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include/seqan/align/alignment_operations.h |
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include/seqan/align/dp_algorithm_impl.h |
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include/seqan/align/dp_band.h |
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include/seqan/align/dp_cell.h |
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include/seqan/align/dp_cell_affine.h |
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include/seqan/align/dp_cell_dynamic.h |
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include/seqan/align/dp_cell_linear.h |
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include/seqan/align/dp_context.h |
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include/seqan/align/dp_formula.h |
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include/seqan/align/dp_formula_affine.h |
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include/seqan/align/dp_formula_dynamic.h |
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include/seqan/align/dp_formula_linear.h |
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include/seqan/align/dp_matrix.h |
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include/seqan/align/dp_matrix_navigator.h |
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include/seqan/align/dp_matrix_navigator_score_matrix.h |
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include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h |
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include/seqan/align/dp_matrix_navigator_trace_matrix.h |
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include/seqan/align/dp_matrix_sparse.h |
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include/seqan/align/dp_meta_info.h |
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include/seqan/align/dp_profile.h |
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include/seqan/align/dp_scout.h |
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include/seqan/align/dp_setup.h |
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include/seqan/align/dp_trace_segment.h |
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include/seqan/align/dp_traceback_adaptor.h |
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include/seqan/align/dp_traceback_impl.h |
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include/seqan/align/evaluate_alignment.h |
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include/seqan/align/fragment.h |
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include/seqan/align/gap_anchor.h |
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include/seqan/align/gapped_value_type.h |
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include/seqan/align/gaps_anchor.h |
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include/seqan/align/gaps_array.h |
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include/seqan/align/gaps_array.h |
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include/seqan/align/gaps_base.h |
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include/seqan/align/gaps_base.h |
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include/seqan/align/gaps_iterator_anchor.h |
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include/seqan/align/gaps_iterator_array.h |
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include/seqan/align/gaps_iterator_base.h |
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include/seqan/align/gaps_iterator_base.h |
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include/seqan/align/gaps_sumlist.h |
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include/seqan/align/global_alignment_banded.h |
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include/seqan/align/hirschberg_set.h |
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include/seqan/align/global_alignment_hirschberg_impl.h |
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include/seqan/align/global_alignment_myers_hirschberg_impl.h |
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include/seqan/align/global_alignment_myers_impl.h |
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include/seqan/align/global_alignment_specialized.h |
| 49 |
include/seqan/align/global_alignment_unbanded.h |
| 50 |
include/seqan/align/local_alignment_banded.h |
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include/seqan/align/local_alignment_banded_waterman_eggert_impl.h |
| 52 |
include/seqan/align/local_alignment_enumeration.h |
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include/seqan/align/local_alignment_enumeration_banded.h |
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include/seqan/align/local_alignment_enumeration_unbanded.h |
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include/seqan/align/local_alignment_unbanded.h |
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include/seqan/align/local_alignment_waterman_eggert_impl.h |
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include/seqan/align/matrix_base.h |
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include/seqan/align/matrix_base.h |
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include/seqan/align_extend.h |
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include/seqan/align_extend/align_extend.h |
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include/seqan/align_extend/align_extend_base.h |
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include/seqan/align_extend/dp_scout_xdrop.h |
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include/seqan/align_profile.h |
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include/seqan/align_profile/add_to_profile.h |
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include/seqan/align_profile/score_profile_seq.h |
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include/seqan/align_split.h |
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include/seqan/align_split/align_split_interface.h |
| 67 |
include/seqan/align_split/dp_scout_split.h |
| 68 |
include/seqan/alignment_free.h |
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include/seqan/alignment_free/af_d2.h |
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include/seqan/alignment_free/af_d2star.h |
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include/seqan/alignment_free/af_d2z.h |
| 72 |
include/seqan/alignment_free/af_n2.h |
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include/seqan/alignment_free/alignment_free_base.h |
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include/seqan/alignment_free/alignment_free_comparison.h |
| 75 |
include/seqan/alignment_free/kmer_functions.h |
| 76 |
include/seqan/arg_parse.h |
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include/seqan/arg_parse/arg_parse_argument.h |
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include/seqan/arg_parse/arg_parse_ctd_support.h |
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include/seqan/arg_parse/arg_parse_doc.h |
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include/seqan/arg_parse/arg_parse_exceptions.h |
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include/seqan/arg_parse/arg_parse_option.h |
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include/seqan/arg_parse/arg_parse_parse.h |
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include/seqan/arg_parse/arg_parse_type_support.h |
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include/seqan/arg_parse/argument_parser.h |
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include/seqan/arg_parse/tool_doc.h |
| 86 |
include/seqan/arg_parse/xml_support.h |
| 87 |
include/seqan/bam_io.h |
| 88 |
include/seqan/bam_io/bam_alignment_record.h |
| 89 |
include/seqan/bam_io/bam_alignment_record_util.h |
| 90 |
include/seqan/bam_io/bam_file.h |
| 91 |
include/seqan/bam_io/bam_header_record.h |
| 92 |
include/seqan/bam_io/bam_index_bai.h |
| 93 |
include/seqan/bam_io/bam_io_context.h |
| 94 |
include/seqan/bam_io/bam_sam_conversion.h |
| 95 |
include/seqan/bam_io/bam_scanner_cache.h |
| 96 |
include/seqan/bam_io/bam_tags_dict.h |
| 97 |
include/seqan/bam_io/cigar.h |
| 98 |
include/seqan/bam_io/read_bam.h |
| 99 |
include/seqan/bam_io/read_sam.h |
| 100 |
include/seqan/bam_io/write_bam.h |
| 101 |
include/seqan/bam_io/write_sam.h |
| 37 |
include/seqan/basic.h |
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include/seqan/basic.h |
| 38 |
include/seqan/basic/basic_aggregates.h |
103 |
include/seqan/basic/aggregate_concept.h |
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include/seqan/basic/basic_allocator_chunkpool.h |
104 |
include/seqan/basic/allocator_chunkpool.h |
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include/seqan/basic/basic_allocator_interface.h |
105 |
include/seqan/basic/allocator_interface.h |
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include/seqan/basic/basic_allocator_multipool.h |
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include/seqan/basic/allocator_multipool.h |
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include/seqan/basic/basic_allocator_simple.h |
107 |
include/seqan/basic/allocator_simple.h |
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include/seqan/basic/basic_allocator_singlepool.h |
108 |
include/seqan/basic/allocator_singlepool.h |
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include/seqan/basic/basic_allocator_to_std.h |
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include/seqan/basic/allocator_to_std.h |
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include/seqan/basic/basic_alphabet_interface.h |
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include/seqan/basic/alphabet_adapt_builtins.h |
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include/seqan/basic/basic_alphabet_interface2.h |
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include/seqan/basic/alphabet_bio.h |
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include/seqan/basic/basic_alphabet_simple.h |
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include/seqan/basic/alphabet_concept.h |
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include/seqan/basic/basic_alphabet_simple_tabs.h |
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include/seqan/basic/alphabet_math.h |
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include/seqan/basic/basic_alphabet_trait_basic.h |
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include/seqan/basic/alphabet_profile.h |
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include/seqan/basic/basic_compare.h |
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include/seqan/basic/alphabet_qualities.h |
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include/seqan/basic/basic_converter.h |
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include/seqan/basic/alphabet_residue.h |
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include/seqan/basic/basic_counted_ptr.h |
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include/seqan/basic/alphabet_residue_funcs.h |
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include/seqan/basic/alphabet_residue_tabs.h |
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include/seqan/basic/alphabet_simple_type.h |
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include/seqan/basic/alphabet_storage.h |
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include/seqan/basic/array_construct_destruct.h |
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include/seqan/basic/basic_aggregate.h |
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include/seqan/basic/basic_allocator.h |
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include/seqan/basic/basic_alphabet.h |
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include/seqan/basic/basic_concept.h |
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include/seqan/basic/basic_container.h |
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include/seqan/basic/basic_debug.h |
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include/seqan/basic/basic_debug.h |
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include/seqan/basic/basic_definition.h |
128 |
include/seqan/basic/basic_device.h |
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include/seqan/basic/basic_forwards.h |
129 |
include/seqan/basic/basic_exception.h |
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include/seqan/basic/basic_generated_forwards.h |
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include/seqan/basic/basic_functors.h |
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include/seqan/basic/basic_holder.h |
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include/seqan/basic/basic_fundamental.h |
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include/seqan/basic/basic_holder_dynamic.h |
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include/seqan/basic/basic_host.h |
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include/seqan/basic/basic_iterator.h |
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include/seqan/basic/basic_iterator.h |
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include/seqan/basic/basic_iterator_adapt_std.h |
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include/seqan/basic/basic_math.h |
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include/seqan/basic/basic_iterator_adaptor.h |
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include/seqan/basic/basic_iterator_base.h |
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include/seqan/basic/basic_iterator_position.h |
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include/seqan/basic/basic_iterator_simple.h |
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include/seqan/basic/basic_logvalue.h |
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include/seqan/basic/basic_metaprogramming.h |
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include/seqan/basic/basic_metaprogramming.h |
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include/seqan/basic/basic_operator.h |
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include/seqan/basic/basic_parallelism.h |
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include/seqan/basic/basic_parallelism.h |
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include/seqan/basic/basic_pointer.h |
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include/seqan/basic/basic_profchar.h |
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include/seqan/basic/basic_profile.h |
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include/seqan/basic/basic_proxy.h |
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include/seqan/basic/basic_proxy.h |
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include/seqan/basic/basic_sse2.h |
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include/seqan/basic/basic_simd_vector.h |
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include/seqan/basic/basic_tag.h |
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include/seqan/basic/basic_smart_pointer.h |
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include/seqan/basic/basic_testing.h |
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include/seqan/basic/basic_stream.h |
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include/seqan/basic/basic_transport.h |
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include/seqan/basic/basic_tangle.h |
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include/seqan/basic/basic_type.h |
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include/seqan/basic/basic_type.h |
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include/seqan/basic/basic_volatile_ptr.h |
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include/seqan/basic/basic_view.h |
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include/seqan/basic/boost_preprocessor_subset.h |
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include/seqan/basic/builtin_functions.h |
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include/seqan/basic/concept_checking.h |
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include/seqan/basic/container_concept.h |
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include/seqan/basic/debug_helper.h |
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include/seqan/basic/debug_test_system.h |
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include/seqan/basic/fundamental_chunking.h |
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include/seqan/basic/fundamental_comparison.h |
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include/seqan/basic/fundamental_concepts.h |
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include/seqan/basic/fundamental_conversion.h |
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include/seqan/basic/fundamental_metafunctions.h |
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include/seqan/basic/fundamental_tags.h |
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include/seqan/basic/fundamental_transport.h |
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include/seqan/basic/holder_base.h |
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include/seqan/basic/holder_simple.h |
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include/seqan/basic/holder_tristate.h |
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include/seqan/basic/hosted_type_interface.h |
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include/seqan/basic/iterator_adapt_pointer.h |
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include/seqan/basic/iterator_adapt_std.h |
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include/seqan/basic/iterator_adaptor.h |
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include/seqan/basic/iterator_base.h |
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include/seqan/basic/iterator_concept.h |
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include/seqan/basic/iterator_counting.h |
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include/seqan/basic/iterator_interface.h |
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include/seqan/basic/iterator_position.h |
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include/seqan/basic/iterator_range.h |
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include/seqan/basic/iterator_zip.h |
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include/seqan/basic/macro_deprecated.h |
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include/seqan/basic/math_functions.h |
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include/seqan/basic/math_log_space_value.h |
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include/seqan/basic/metaprogramming_control.h |
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include/seqan/basic/metaprogramming_enable_if.h |
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include/seqan/basic/metaprogramming_logic.h |
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include/seqan/basic/metaprogramming_math.h |
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include/seqan/basic/metaprogramming_type.h |
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include/seqan/basic/metaprogramming_type_algebra.h |
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include/seqan/basic/pair_base.h |
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include/seqan/basic/pair_bit_compressed.h |
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include/seqan/basic/pair_packed.h |
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include/seqan/basic/profiling.h |
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include/seqan/basic/property_map_concept.h |
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include/seqan/basic/proxy_base.h |
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include/seqan/basic/proxy_iterator.h |
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include/seqan/basic/test_system.h |
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include/seqan/basic/triple_base.h |
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include/seqan/basic/triple_packed.h |
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include/seqan/basic/tuple_base.h |
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include/seqan/basic/tuple_bit_compressed.h |
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include/seqan/basic/volatile_ptr.h |
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include/seqan/bed_io.h |
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include/seqan/bed_io/bed_file.h |
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include/seqan/bed_io/bed_record.h |
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include/seqan/bed_io/read_bed.h |
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include/seqan/bed_io/write_bed.h |
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include/seqan/blast.h |
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include/seqan/blast.h |
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include/seqan/blast/blast_base.h |
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include/seqan/blast/blast_base.h |
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include/seqan/blast/blast_generated_forwards.h |
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include/seqan/blast/blast_io_context.h |
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include/seqan/blast/blast_hit.h |
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include/seqan/blast/blast_record.h |
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include/seqan/blast/blast_hit_iterator.h |
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include/seqan/blast/blast_report_out.h |
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include/seqan/blast/blast_hsp.h |
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include/seqan/blast/blast_statistics.h |
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include/seqan/blast/blast_hsp_iterator.h |
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include/seqan/blast/blast_tabular.h |
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include/seqan/blast/blast_iterator.h |
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include/seqan/blast/blast_tabular_in.h |
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include/seqan/blast/blast_parsing.h |
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include/seqan/blast/blast_tabular_lowlevel.h |
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include/seqan/blast/blast_report.h |
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include/seqan/blast/blast_tabular_out.h |
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include/seqan/blast/blast_run.h |
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include/seqan/blast/blast_stream_hit.h |
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include/seqan/blast/blast_stream_hit_iterator.h |
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include/seqan/blast/blast_stream_hsp_iterator.h |
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include/seqan/blast/blast_stream_report.h |
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include/seqan/chaining.h |
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include/seqan/chaining/chain_base.h |
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include/seqan/chaining/chain_generic.h |
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include/seqan/chaining/chain_meta_fragment.h |
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include/seqan/chaining/chain_point.h |
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include/seqan/chaining/chain_wrapper_point.h |
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include/seqan/chaining/chaining_generated_forwards.h |
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include/seqan/chaining/fragment.h |
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include/seqan/chaining/geom_distribution.h |
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include/seqan/chaining/range_max_tree.h |
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include/seqan/chaining/range_tree.h |
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include/seqan/chaining/rmt_base.h |
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include/seqan/chaining/rmt_common_algos.h |
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include/seqan/chaining/rmt_compl_algos.h |
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include/seqan/chaining/rmt_def_algos.h |
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include/seqan/chaining/rmt_skip_base_element.h |
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include/seqan/chaining/rmt_skip_element.h |
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include/seqan/chaining/rt_base.h |
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include/seqan/chaining/rt_common_algos.h |
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include/seqan/chaining/rt_impl.h |
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include/seqan/chaining/rt_skip_base_element.h |
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include/seqan/chaining/rt_skip_element.h |
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include/seqan/chaining/rt_sl_base.h |
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include/seqan/chaining/rt_sl_compl_algos.h |
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include/seqan/chaining/rt_sl_def_algos.h |
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include/seqan/chaining/rt_sl_impl.h |
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include/seqan/chaining/score_chain.h |
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include/seqan/chaining/score_chain_sop.h |
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include/seqan/chaining/score_manhattan.h |
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include/seqan/chaining/score_zero.h |
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include/seqan/chaining/skip_base_element.h |
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include/seqan/chaining/skip_element.h |
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include/seqan/chaining/skip_list.h |
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include/seqan/chaining/skip_list_base.h |
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include/seqan/chaining/skip_list_dynamic.h |
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include/seqan/chaining/skip_list_impl.h |
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include/seqan/chaining/skip_list_iterator.h |
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include/seqan/chaining/skip_list_type.h |
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include/seqan/chaining/skip_pool_alloc.h |
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include/seqan/chaining/tree_chain.h |
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include/seqan/chaining/tree_chain_sop.h |
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include/seqan/chaining/tree_chain_utils.h |
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include/seqan/consensus.h |
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include/seqan/consensus.h |
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include/seqan/consensus/consensus_aligner.h |
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include/seqan/consensus/consensus_aligner_interface.h |
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include/seqan/consensus/consensus_alignment_options.h |
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include/seqan/consensus/consensus_base.h |
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include/seqan/consensus/consensus_base.h |
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include/seqan/consensus/consensus_generated_forwards.h |
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include/seqan/consensus/consensus_builder.h |
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include/seqan/consensus/consensus_library.h |
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include/seqan/consensus/consensus_library.h |
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include/seqan/consensus/consensus_realign.h |
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include/seqan/consensus/consensus_realign.h |
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include/seqan/consensus/consensus_score.h |
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include/seqan/consensus/consensus_score.h |
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include/seqan/consensus/overlap_info_computation.h |
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include/seqan/consensus/overlapper.h |
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include/seqan/file.h |
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include/seqan/file.h |
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include/seqan/file/chunk_collector.h |
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include/seqan/file/cstream.h |
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include/seqan/file/file_array.h |
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include/seqan/file/file_base.h |
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include/seqan/file/file_base.h |
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include/seqan/file/file_cstyle.h |
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include/seqan/file/file_cstyle.h |
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include/seqan/file/file_filereader.h |
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include/seqan/file/file_filereaderiterator.h |
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include/seqan/file/file_format.h |
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include/seqan/file/file_format_cgviz.h |
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include/seqan/file/file_format_embl.h |
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include/seqan/file/file_format_fasta.h |
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include/seqan/file/file_format_fasta_align.h |
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include/seqan/file/file_format_genbank.h |
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1789 |
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| 1638 |
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1790 |
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| 1639 |
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1791 |
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| 1640 |
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1792 |
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| 1641 |
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1793 |
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| 1642 |
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1794 |
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| 1643 |
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1795 |
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1796 |
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| 1645 |
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1797 |
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1798 |
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1799 |
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OpenAddressingQGramIndex.html |
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%%DATADIR%%/docs/SHORTCUT_Blosum45.html |
1800 |
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_OracleBfamPattern.html |
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1801 |
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%%DATADIR%%/docs/SHORTCUT_Blosum80.html |
1802 |
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1803 |
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| 1652 |
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1804 |
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1805 |
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1806 |
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1809 |
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| 1658 |
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1810 |
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| 1659 |
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1811 |
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1812 |
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1813 |
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1814 |
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| 1663 |
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1815 |
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| 1664 |
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1816 |
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| 1665 |
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1817 |
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| 1666 |
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1818 |
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| 1667 |
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1819 |
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| 1668 |
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1820 |
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| 1669 |
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1821 |
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| 1670 |
%%DATADIR%%/docs/SHORTCUT_Multi_Fasta.html |
1822 |
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| 1671 |
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1823 |
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| 1672 |
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1824 |
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| 1673 |
%%DATADIR%%/docs/SHORTCUT_Myers_Ukkonen_Banded.html |
1825 |
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| 1674 |
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1826 |
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1827 |
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1828 |
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1829 |
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| 1678 |
%%DATADIR%%/docs/SHORTCUT_Pam250.html |
1830 |
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%%DATADIR%%/docs/SHORTCUT_Pam40.html |
1831 |
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1832 |
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1833 |
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| 1682 |
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1834 |
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| 1683 |
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1835 |
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Shifter.html |
| 1684 |
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1836 |
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1837 |
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1838 |
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1839 |
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| 1688 |
%%DATADIR%%/docs/SHORTCUT_Rna_String.html |
1840 |
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| 1689 |
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1841 |
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1842 |
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1843 |
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| 1692 |
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1844 |
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1845 |
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1846 |
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1847 |
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1848 |
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1849 |
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1850 |
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1851 |
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| 1700 |
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1852 |
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1853 |
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1854 |
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1855 |
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1856 |
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1857 |
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1858 |
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1859 |
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1860 |
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1861 |
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1862 |
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1863 |
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| 1712 |
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1864 |
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1865 |
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1866 |
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| 1715 |
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1867 |
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| 1716 |
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1868 |
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1869 |
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1870 |
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1871 |
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| 1720 |
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1872 |
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| 1721 |
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1873 |
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| 1722 |
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1874 |
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1875 |
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| 1724 |
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1876 |
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| 1725 |
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1877 |
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| 1726 |
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1878 |
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| 1727 |
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1879 |
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| 1728 |
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1880 |
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1881 |
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| 1730 |
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1882 |
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| 1731 |
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1883 |
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| 1732 |
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1884 |
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| 1733 |
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1885 |
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| 1734 |
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1886 |
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| 1735 |
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1887 |
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| 1736 |
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1888 |
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| 1737 |
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1889 |
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| 1738 |
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1890 |
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1891 |
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1893 |
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1894 |
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1895 |
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| 1747 |
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| 1748 |
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1901 |
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|
| 1751 |
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| 1759 |
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| 1760 |
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| 1763 |
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| 1764 |
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| 1769 |
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| 1784 |
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| 1796 |
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| 1798 |
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| 1799 |
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| 1800 |
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| 1801 |
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| 1803 |
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| 1816 |
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| 1817 |
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| 1818 |
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