FreeBSD Bugzilla – Attachment 169674 Details for
Bug 204127
[MAINTAINER] biology/seqan split apps out into biology/seqan-apps
Home
|
New
|
Browse
|
Search
|
[?]
|
Reports
|
Help
|
New Account
|
Log In
Remember
[x]
|
Forgot Password
Login:
[x]
[patch]
patch for biology/seqan1
seqan1.patch (text/plain), 152.21 KB, created by
Hannes Hauswedell
on 2016-04-25 10:36:53 UTC
(
hide
)
Description:
patch for biology/seqan1
Filename:
MIME Type:
Creator:
Hannes Hauswedell
Created:
2016-04-25 10:36:53 UTC
Size:
152.21 KB
patch
obsolete
>diff -ru seqan1ORIG/Makefile seqan1/Makefile >--- seqan1ORIG/Makefile 2015-03-21 12:53:27.000000000 +0100 >+++ seqan1/Makefile 2016-04-25 12:25:22.180591000 +0200 >@@ -1,34 +1,30 @@ > # Created by: h2 > # $FreeBSD: head/biology/seqan/Makefile 381791 2015-03-21 11:53:27Z marino $ > >-PORTNAME= seqan >+PORTNAME= seqan1 > PORTVERSION= 1.3.1 >-PORTREVISION= 3 >+PORTREVISION= 4 > CATEGORIES= biology > MASTER_SITES= http://ftp.seqan.de/releases/ > > MAINTAINER= h2+fbsdports@fsfe.org > COMMENT= C++ Sequence Analysis Library > >-LICENSE= BSD3CLAUSE GPLv3 >-LICENSE_COMB= multi >- >+LICENSE= BSD3CLAUSE > LICENSE_FILE_BSD=${WRKSRC}/seqan/LICENSE >-LICENSE_FILE_GPLv3=${WRKSRC}/apps/LICENSE > >-USES= cmake:outsource python:build zip >-CMAKE_SOURCE_PATH=${WRKSRC}/cmake >-MAKE_JOB_SAFE= yes >- >-SUB_FILES= pkg-message >-PKG_MESSAGE= ${WRKDIR}/pkg-message >- >-USE_GCC= 4.8 >- >-# unsafe workaround because FreeBSD lacks logl and expl >-# see "BUGS" in `man 3 math` >-post-patch: >- @${REINPLACE_CMD} -e 's|expl|exp|g' ${WRKSRC}/apps/snp_store/snp_store.h >- @${REINPLACE_CMD} -e 's|logl|log|g' ${WRKSRC}/apps/snp_store/snp_store.h >+USES= zip >+NO_BUILD= yes >+ >+CONFLICTS= seqan-[2-9]* >+ >+do-install: >+ ${MKDIR} ${STAGEDIR}/${PREFIX}/include/${PORTNAME} >+ cd ${WRKSRC} && ${COPYTREE_SHARE} ./${PORTNAME} ${STAGEDIR}/${PREFIX}/include >+ cd ${WRKSRC} && ${INSTALL_DATA} ./${PORTNAME}.h ${STAGEDIR}/${PREFIX}/include >+ >+post-install: >+ ${MKDIR} ${STAGEDIR}${DOCSDIR} >+ cd ${WRKSRC}/docs && ${COPYTREE_SHARE} ./ ${STAGEDIR}${DOCSDIR} > > .include <bsd.port.mk> >diff -ru seqan1ORIG/pkg-descr seqan1/pkg-descr >--- seqan1ORIG/pkg-descr 2014-01-22 16:44:51.000000000 +0100 >+++ seqan1/pkg-descr 2016-04-25 12:31:31.079566355 +0200 >@@ -1,6 +1,10 @@ > SeqAn is an open source C++ library of efficient algorithms > and data structures for the analysis of sequences with the >-focus on biological data. The library is licensed under the >-3-clause BSD license except the applications which are GPL. >+focus on biological data. >+ >+This port includes only the library, the apps have been >+moved to biology/seqan-apps. This is the last release of >+the version 1 API, it is highly recommended to upgrade to >+biology/seqan (version 2). > > WWW: http://www.seqan.de/ >diff -ru seqan1ORIG/pkg-plist seqan1/pkg-plist >--- seqan1ORIG/pkg-plist 2014-10-20 09:10:48.000000000 +0200 >+++ seqan1/pkg-plist 2016-04-11 16:49:34.024427000 +0200 >@@ -1,21 +1,5 @@ >-bin/dfi >-bin/insegt >-bin/mason >-bin/micro_razers >-bin/pair_align >-bin/param_chooser >-bin/rabema >-bin/razers >-bin/razers2 >-bin/rep_sep >-bin/sak >-bin/seqan_tcoffee >-bin/seqcons >-bin/snp_store >-bin/splazers >-bin/stellar >-bin/tree_recon > include/seqan.h >+include/seqan/LICENSE > include/seqan/align.h > include/seqan/align/align_algorithms.h > include/seqan/align/align_base.h >@@ -521,1591 +505,1479 @@ > include/seqan/system/system_sema.h > include/seqan/system/system_thread.h > include/seqan/version.h >-%%DATADIR%%/docs/ADAPTION.char+array.html >-%%DATADIR%%/docs/ADAPTION.std_3a_3a_F_I_L_E+_2a.html >-%%DATADIR%%/docs/ADAPTION.std_3a_3abasic__string.html >-%%DATADIR%%/docs/ADAPTION.std_3a_3aiostream.html >-%%DATADIR%%/docs/ADAPTION.std_3a_3alist.html >-%%DATADIR%%/docs/ADAPTION.std_3a_3avector.html >-%%DATADIR%%/docs/CLASS_Align.html >-%%DATADIR%%/docs/CLASS_Align_Cols.html >-%%DATADIR%%/docs/CLASS_Align_Config.html >-%%DATADIR%%/docs/CLASS_Align_Quality_Store_Element.html >-%%DATADIR%%/docs/CLASS_Aligned_Read_Layout.html >-%%DATADIR%%/docs/CLASS_Aligned_Read_Store_Element.html >-%%DATADIR%%/docs/CLASS_Allocator.html >-%%DATADIR%%/docs/CLASS_Async_Request.html >-%%DATADIR%%/docs/CLASS_Auto_Seq_Format.html >-%%DATADIR%%/docs/CLASS_Blast_Hit.html >-%%DATADIR%%/docs/CLASS_Blast_Hsp.html >-%%DATADIR%%/docs/CLASS_Blast_Report.html >-%%DATADIR%%/docs/CLASS_Bundle2.html >-%%DATADIR%%/docs/CLASS_Bundle3.html >-%%DATADIR%%/docs/CLASS_Bundle5.html >-%%DATADIR%%/docs/CLASS_Command_Line_Option.html >-%%DATADIR%%/docs/CLASS_Command_Line_Parser.html >-%%DATADIR%%/docs/CLASS_Concatenator_Many_To_One.html >-%%DATADIR%%/docs/CLASS_Contig_File.html >-%%DATADIR%%/docs/CLASS_Contig_Store_Element.html >-%%DATADIR%%/docs/CLASS_Dequeue.html >-%%DATADIR%%/docs/CLASS_Edge_Stump.html >-%%DATADIR%%/docs/CLASS_External+_Property+_Map.html >-%%DATADIR%%/docs/CLASS_File.html >-%%DATADIR%%/docs/CLASS_File_Format.html >-%%DATADIR%%/docs/CLASS_Finder.html >-%%DATADIR%%/docs/CLASS_Fragment.html >-%%DATADIR%%/docs/CLASS_Fragment_Store.html >-%%DATADIR%%/docs/CLASS_Frequency_Distribution.html >-%%DATADIR%%/docs/CLASS_Functor_Complement.html >-%%DATADIR%%/docs/CLASS_Functor_Convert.html >-%%DATADIR%%/docs/CLASS_Functor_Lowcase.html >-%%DATADIR%%/docs/CLASS_Functor_Upcase.html >-%%DATADIR%%/docs/CLASS_Gap_Anchor.html >-%%DATADIR%%/docs/CLASS_Gaps.html >-%%DATADIR%%/docs/CLASS_Graph.html >-%%DATADIR%%/docs/CLASS_Hardwired_Shape.html >-%%DATADIR%%/docs/CLASS_Holder.html >-%%DATADIR%%/docs/CLASS_Id_Manager.html >-%%DATADIR%%/docs/CLASS_Index.html >-%%DATADIR%%/docs/CLASS_Internal_Map.html >-%%DATADIR%%/docs/CLASS_Internal_Pointer_Map.html >-%%DATADIR%%/docs/CLASS_Internal_Raw_Map.html >-%%DATADIR%%/docs/CLASS_Interval_And_Cargo.html >-%%DATADIR%%/docs/CLASS_Interval_Tree.html >-%%DATADIR%%/docs/CLASS_Interval_Tree_Node.html >-%%DATADIR%%/docs/CLASS_Iter.html >-%%DATADIR%%/docs/CLASS_Lexical.html >-%%DATADIR%%/docs/CLASS_Library_Store_Element.html >-%%DATADIR%%/docs/CLASS_Local_Alignment_Finder.html >-%%DATADIR%%/docs/CLASS_Map.html >-%%DATADIR%%/docs/CLASS_Markov_Model.html >-%%DATADIR%%/docs/CLASS_Mate_Pair_Store_Element.html >-%%DATADIR%%/docs/CLASS_Matrix.html >-%%DATADIR%%/docs/CLASS_Memory_Manager.html >-%%DATADIR%%/docs/CLASS_Modified_Alphabet.html >-%%DATADIR%%/docs/CLASS_Modified_Iterator.html >-%%DATADIR%%/docs/CLASS_Modified_String.html >-%%DATADIR%%/docs/CLASS_Motif_Finder.html >-%%DATADIR%%/docs/CLASS_Name_Store_Cache.html >-%%DATADIR%%/docs/CLASS_Pair.html >-%%DATADIR%%/docs/CLASS_Pattern.html >-%%DATADIR%%/docs/CLASS_Pdf.html >-%%DATADIR%%/docs/CLASS_Pipe.html >-%%DATADIR%%/docs/CLASS_Point_And_Cargo.html >-%%DATADIR%%/docs/CLASS_Pool.html >-%%DATADIR%%/docs/CLASS_Priority_Type.html >-%%DATADIR%%/docs/CLASS_Property_Map.html >-%%DATADIR%%/docs/CLASS_Proxy.html >-%%DATADIR%%/docs/CLASS_Pseudocount.html >-%%DATADIR%%/docs/CLASS_Read_Store_Element.html >-%%DATADIR%%/docs/CLASS_Rng.html >-%%DATADIR%%/docs/CLASS_Score.html >-%%DATADIR%%/docs/CLASS_Seed.html >-%%DATADIR%%/docs/CLASS_Seed_Set.html >-%%DATADIR%%/docs/CLASS_Segment.html >-%%DATADIR%%/docs/CLASS_Shape.html >-%%DATADIR%%/docs/CLASS_Simple_Type.html >-%%DATADIR%%/docs/CLASS_String.html >-%%DATADIR%%/docs/CLASS_String_Set.html >-%%DATADIR%%/docs/CLASS_Tag_Selector.html >-%%DATADIR%%/docs/CLASS_To_Std_Allocator.html >-%%DATADIR%%/docs/CLASS_Triple.html >-%%DATADIR%%/docs/CLASS_Tuple.html >-%%DATADIR%%/docs/CONCEPT_Allocator.html >-%%DATADIR%%/docs/CONCEPT_Container.html >-%%DATADIR%%/docs/CONCEPT_Finder.html >-%%DATADIR%%/docs/CONCEPT_Iterator.html >-%%DATADIR%%/docs/CONCEPT_Pattern.html >-%%DATADIR%%/docs/CONCEPT_Rooted+_Iterator.html >-%%DATADIR%%/docs/CONCEPT_Simple+_Type.html >-%%DATADIR%%/docs/DEMO_All+_Pairs+_Shortest+_Path.html >-%%DATADIR%%/docs/DEMO_Allocators.html >-%%DATADIR%%/docs/DEMO_Alphabets.html >-%%DATADIR%%/docs/DEMO_Approximate+_Searching.html >-%%DATADIR%%/docs/DEMO_Bellman-_Ford+_Algorithm.html >-%%DATADIR%%/docs/DEMO_Blast+_Reports.html >-%%DATADIR%%/docs/DEMO_Breadth-_First+_Search.html >-%%DATADIR%%/docs/DEMO_Constraint+_Iterator.html >-%%DATADIR%%/docs/DEMO_Depth-_First+_Search.html >-%%DATADIR%%/docs/DEMO_Dijkstras+_Algorithm.html >-%%DATADIR%%/docs/DEMO_Exact+_Searching.html >-%%DATADIR%%/docs/DEMO_File+_Format+_I_2f_O.html >-%%DATADIR%%/docs/DEMO_Floyd-_Warshall+_Algorithm.html >-%%DATADIR%%/docs/DEMO_Global+_Alignments.html >-%%DATADIR%%/docs/DEMO_H_M_M+_Silent+_States.html >-%%DATADIR%%/docs/DEMO_H_M_M.html >-%%DATADIR%%/docs/DEMO_Heaviest+_Increasing+_Subsequence.html >-%%DATADIR%%/docs/DEMO_Index+_Finder+_String_Set.html >-%%DATADIR%%/docs/DEMO_Index+_Finder.html >-%%DATADIR%%/docs/DEMO_Iterator+_Basics.html >-%%DATADIR%%/docs/DEMO_Kruskals+_Algorithm.html >-%%DATADIR%%/docs/DEMO_Local+_Alignments.html >-%%DATADIR%%/docs/DEMO_Longest+_Common+_Subsequence.html >-%%DATADIR%%/docs/DEMO_Longest+_Increasing+_Subsequence.html >-%%DATADIR%%/docs/DEMO_Maximal+_Repeats.html >-%%DATADIR%%/docs/DEMO_Maximal+_Unique+_Matches.html >-%%DATADIR%%/docs/DEMO_Maximum+_Flow.html >-%%DATADIR%%/docs/DEMO_Mod_Reverse.html >-%%DATADIR%%/docs/DEMO_Mod_View.html >-%%DATADIR%%/docs/DEMO_Motif+_Finder.html >-%%DATADIR%%/docs/DEMO_Mummy.html >-%%DATADIR%%/docs/DEMO_Nested+_Modifiers.html >-%%DATADIR%%/docs/DEMO_Pizza+_26+_Chili+_Index.html >-%%DATADIR%%/docs/DEMO_Prims+_Algorithm.html >-%%DATADIR%%/docs/DEMO_Rooted+_Iterators.html >-%%DATADIR%%/docs/DEMO_Shortest+_Path+in+_D_A_Gs.html >-%%DATADIR%%/docs/DEMO_String+_Basics.html >-%%DATADIR%%/docs/DEMO_Strongly+_Connected+_Components.html >-%%DATADIR%%/docs/DEMO_Suffix+_Array.html >-%%DATADIR%%/docs/DEMO_Supermaximal+_Repeats.html >-%%DATADIR%%/docs/DEMO_Topological+_Sort.html >-%%DATADIR%%/docs/DEMO_Transitive+_Closure.html >-%%DATADIR%%/docs/DEMO_Wildcard+_Searching.html >-%%DATADIR%%/docs/FUNCTION.abs_Freq_Of_Letters_In_Seq.html >-%%DATADIR%%/docs/FUNCTION.abs_Freq_Of_Letters_In_Set_Of_Seqs.html >-%%DATADIR%%/docs/FUNCTION.add_Argument_Text.html >-%%DATADIR%%/docs/FUNCTION.add_Child.html >-%%DATADIR%%/docs/FUNCTION.add_Edge.html >-%%DATADIR%%/docs/FUNCTION.add_Edges.html >-%%DATADIR%%/docs/FUNCTION.add_Help_Line.html >-%%DATADIR%%/docs/FUNCTION.add_Interval.html >-%%DATADIR%%/docs/FUNCTION.add_Line.html >-%%DATADIR%%/docs/FUNCTION.add_Option.html >-%%DATADIR%%/docs/FUNCTION.add_Section.html >-%%DATADIR%%/docs/FUNCTION.add_Seed.html >-%%DATADIR%%/docs/FUNCTION.add_Seeds.html >-%%DATADIR%%/docs/FUNCTION.add_Title_Line.html >-%%DATADIR%%/docs/FUNCTION.add_Usage_Line.html >-%%DATADIR%%/docs/FUNCTION.add_Value.html >-%%DATADIR%%/docs/FUNCTION.add_Version_Line.html >-%%DATADIR%%/docs/FUNCTION.add_Vertex.html >-%%DATADIR%%/docs/FUNCTION.adjust_Top.html >-%%DATADIR%%/docs/FUNCTION.alignment.html >-%%DATADIR%%/docs/FUNCTION.alignment_Evaluation.html >-%%DATADIR%%/docs/FUNCTION.all_Pairs_Shortest_Path.html >-%%DATADIR%%/docs/FUNCTION.allocate.html >-%%DATADIR%%/docs/FUNCTION.append.html >-%%DATADIR%%/docs/FUNCTION.append_Aligned_Read.html >-%%DATADIR%%/docs/FUNCTION.append_Diag.html >-%%DATADIR%%/docs/FUNCTION.append_Mate_Pair.html >-%%DATADIR%%/docs/FUNCTION.append_Name.html >-%%DATADIR%%/docs/FUNCTION.append_Read.html >-%%DATADIR%%/docs/FUNCTION.append_Seqs.html >-%%DATADIR%%/docs/FUNCTION.append_Value.html >-%%DATADIR%%/docs/FUNCTION.argument_Count.html >-%%DATADIR%%/docs/FUNCTION.argument_Text.html >-%%DATADIR%%/docs/FUNCTION.array_Clear_Space.html >-%%DATADIR%%/docs/FUNCTION.array_Construct.html >-%%DATADIR%%/docs/FUNCTION.array_Construct_Copy.html >-%%DATADIR%%/docs/FUNCTION.array_Construct_Move.html >-%%DATADIR%%/docs/FUNCTION.array_Copy.html >-%%DATADIR%%/docs/FUNCTION.array_Copy_Backward.html >-%%DATADIR%%/docs/FUNCTION.array_Copy_Forward.html >-%%DATADIR%%/docs/FUNCTION.array_Destruct.html >-%%DATADIR%%/docs/FUNCTION.array_Fill.html >-%%DATADIR%%/docs/FUNCTION.array_Move.html >-%%DATADIR%%/docs/FUNCTION.array_Move_Backward.html >-%%DATADIR%%/docs/FUNCTION.array_Move_Forward.html >-%%DATADIR%%/docs/FUNCTION.assign.html >-%%DATADIR%%/docs/FUNCTION.assign_Begin_State.html >-%%DATADIR%%/docs/FUNCTION.assign_Cargo.html >-%%DATADIR%%/docs/FUNCTION.assign_Cropped_Seq_Id.html >-%%DATADIR%%/docs/FUNCTION.assign_Emission_Probability.html >-%%DATADIR%%/docs/FUNCTION.assign_End_State.html >-%%DATADIR%%/docs/FUNCTION.assign_Next_S.html >-%%DATADIR%%/docs/FUNCTION.assign_Next_T.html >-%%DATADIR%%/docs/FUNCTION.assign_Property.html >-%%DATADIR%%/docs/FUNCTION.assign_Qual.html >-%%DATADIR%%/docs/FUNCTION.assign_Qual_Id.html >-%%DATADIR%%/docs/FUNCTION.assign_Qualities.html >-%%DATADIR%%/docs/FUNCTION.assign_Quality_Value.html >-%%DATADIR%%/docs/FUNCTION.assign_Root.html >-%%DATADIR%%/docs/FUNCTION.assign_Seq.html >-%%DATADIR%%/docs/FUNCTION.assign_Seq_Id.html >-%%DATADIR%%/docs/FUNCTION.assign_Silent_Status.html >-%%DATADIR%%/docs/FUNCTION.assign_Source.html >-%%DATADIR%%/docs/FUNCTION.assign_String_Set.html >-%%DATADIR%%/docs/FUNCTION.assign_Target.html >-%%DATADIR%%/docs/FUNCTION.assign_Transition_Probability.html >-%%DATADIR%%/docs/FUNCTION.assign_Value.html >-%%DATADIR%%/docs/FUNCTION.assign_Value_By_Id.html >-%%DATADIR%%/docs/FUNCTION.async_Read_At.html >-%%DATADIR%%/docs/FUNCTION.async_Write_At.html >-%%DATADIR%%/docs/FUNCTION.at_Begin.html >-%%DATADIR%%/docs/FUNCTION.at_End.html >-%%DATADIR%%/docs/FUNCTION.at_End_Of_Sequence.html >-%%DATADIR%%/docs/FUNCTION.at_Nil.html >-%%DATADIR%%/docs/FUNCTION.atomic_Add.html >-%%DATADIR%%/docs/FUNCTION.atomic_Cas.html >-%%DATADIR%%/docs/FUNCTION.atomic_Dec.html >-%%DATADIR%%/docs/FUNCTION.atomic_Inc.html >-%%DATADIR%%/docs/FUNCTION.atomic_Max.html >-%%DATADIR%%/docs/FUNCTION.atomic_Min.html >-%%DATADIR%%/docs/FUNCTION.atomic_Or.html >-%%DATADIR%%/docs/FUNCTION.atomic_Xor.html >-%%DATADIR%%/docs/FUNCTION.back.html >-%%DATADIR%%/docs/FUNCTION.background_Frequency.html >-%%DATADIR%%/docs/FUNCTION.backward_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.banded_Alignment.html >-%%DATADIR%%/docs/FUNCTION.banded_Chain_Alignment.html >-%%DATADIR%%/docs/FUNCTION.begin.html >-%%DATADIR%%/docs/FUNCTION.begin_Position.html >-%%DATADIR%%/docs/FUNCTION.begin_Read.html >-%%DATADIR%%/docs/FUNCTION.begin_State.html >-%%DATADIR%%/docs/FUNCTION.begin_Write.html >-%%DATADIR%%/docs/FUNCTION.bellman_Ford_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.binomial_Coefficient.html >-%%DATADIR%%/docs/FUNCTION.blast_23get_Alignment.html >-%%DATADIR%%/docs/FUNCTION.breadth_First_Search.html >-%%DATADIR%%/docs/FUNCTION.bundle2.html >-%%DATADIR%%/docs/FUNCTION.bundle3.html >-%%DATADIR%%/docs/FUNCTION.bundle5.html >-%%DATADIR%%/docs/FUNCTION.bwt_At.html >-%%DATADIR%%/docs/FUNCTION.calculate_Insert_Sizes.html >-%%DATADIR%%/docs/FUNCTION.calculate_Mate_Indices.html >-%%DATADIR%%/docs/FUNCTION.can_Parse_String.html >-%%DATADIR%%/docs/FUNCTION.cancel.html >-%%DATADIR%%/docs/FUNCTION.capacity.html >-%%DATADIR%%/docs/FUNCTION.cargo.html >-%%DATADIR%%/docs/FUNCTION.child_At.html >-%%DATADIR%%/docs/FUNCTION.child_Vertex.html >-%%DATADIR%%/docs/FUNCTION.children_Are_Leaves.html >-%%DATADIR%%/docs/FUNCTION.clear.html >-%%DATADIR%%/docs/FUNCTION.clear_Edges.html >-%%DATADIR%%/docs/FUNCTION.clear_Gaps.html >-%%DATADIR%%/docs/FUNCTION.clear_Reads.html >-%%DATADIR%%/docs/FUNCTION.clear_Vertices.html >-%%DATADIR%%/docs/FUNCTION.clipped_Begin_Position.html >-%%DATADIR%%/docs/FUNCTION.clipped_End_Position.html >-%%DATADIR%%/docs/FUNCTION.close.html >-%%DATADIR%%/docs/FUNCTION.col.html >-%%DATADIR%%/docs/FUNCTION.collect_Leaves.html >-%%DATADIR%%/docs/FUNCTION.cols.html >-%%DATADIR%%/docs/FUNCTION.compact_Aligned_Reads.html >-%%DATADIR%%/docs/FUNCTION.compact_Pair_Match_Ids.html >-%%DATADIR%%/docs/FUNCTION.compare.html >-%%DATADIR%%/docs/FUNCTION.complement.html >-%%DATADIR%%/docs/FUNCTION.complete_Profile.html >-%%DATADIR%%/docs/FUNCTION.compute_Generous_Capacity.html >-%%DATADIR%%/docs/FUNCTION.concat.html >-%%DATADIR%%/docs/FUNCTION.connected_Components.html >-%%DATADIR%%/docs/FUNCTION.container.html >-%%DATADIR%%/docs/FUNCTION.convert.html >-%%DATADIR%%/docs/FUNCTION.convert_Alignment.html >-%%DATADIR%%/docs/FUNCTION.convert_Impl.html >-%%DATADIR%%/docs/FUNCTION.convert_Matches_To_Global_Alignment.html >-%%DATADIR%%/docs/FUNCTION.convert_Pair_Wise_To_Global_Alignment.html >-%%DATADIR%%/docs/FUNCTION.convert_Pattern_To_Profile.html >-%%DATADIR%%/docs/FUNCTION.convert_Residue_To_Frequency_Dist.html >-%%DATADIR%%/docs/FUNCTION.convert_Set_Of_Patterns_To_Profile.html >-%%DATADIR%%/docs/FUNCTION.count_Characters.html >-%%DATADIR%%/docs/FUNCTION.count_Children.html >-%%DATADIR%%/docs/FUNCTION.count_Gaps.html >-%%DATADIR%%/docs/FUNCTION.count_Occurrences.html >-%%DATADIR%%/docs/FUNCTION.count_Occurrences_Multiple.html >-%%DATADIR%%/docs/FUNCTION.cpu_Time.html >-%%DATADIR%%/docs/FUNCTION.create.html >-%%DATADIR%%/docs/FUNCTION.create_B_W_Table.html >-%%DATADIR%%/docs/FUNCTION.create_Childtab.html >-%%DATADIR%%/docs/FUNCTION.create_Count_Array.html >-%%DATADIR%%/docs/FUNCTION.create_Interval_Tree.html >-%%DATADIR%%/docs/FUNCTION.create_Lcp_Table.html >-%%DATADIR%%/docs/FUNCTION.create_Oracle.html >-%%DATADIR%%/docs/FUNCTION.create_Oracle_On_Reverse.html >-%%DATADIR%%/docs/FUNCTION.create_Q_Gram_Index.html >-%%DATADIR%%/docs/FUNCTION.create_Q_Gram_Index_Dir_Only.html >-%%DATADIR%%/docs/FUNCTION.create_Q_Gram_Index_S_A_Only.html >-%%DATADIR%%/docs/FUNCTION.create_Root.html >-%%DATADIR%%/docs/FUNCTION.create_Source.html >-%%DATADIR%%/docs/FUNCTION.create_Suffix_Array.html >-%%DATADIR%%/docs/FUNCTION.create_Suffix_Trie.html >-%%DATADIR%%/docs/FUNCTION.create_Trie.html >-%%DATADIR%%/docs/FUNCTION.create_Trie_On_Reverse.html >-%%DATADIR%%/docs/FUNCTION.create_Wotd_Index.html >-%%DATADIR%%/docs/FUNCTION.dag_Shortest_Path.html >-%%DATADIR%%/docs/FUNCTION.database_Name.html >-%%DATADIR%%/docs/FUNCTION.database_Orientation_Plus.html >-%%DATADIR%%/docs/FUNCTION.deallocate.html >-%%DATADIR%%/docs/FUNCTION.degree.html >-%%DATADIR%%/docs/FUNCTION.dependent.html >-%%DATADIR%%/docs/FUNCTION.dependent_Source.html >-%%DATADIR%%/docs/FUNCTION.depth_First_Search.html >-%%DATADIR%%/docs/FUNCTION.detach.html >-%%DATADIR%%/docs/FUNCTION.determine_Consensus_Seq.html >-%%DATADIR%%/docs/FUNCTION.difference.html >-%%DATADIR%%/docs/FUNCTION.dijkstra.html >-%%DATADIR%%/docs/FUNCTION.dimension.html >-%%DATADIR%%/docs/FUNCTION.dir_At.html >-%%DATADIR%%/docs/FUNCTION.display.html >-%%DATADIR%%/docs/FUNCTION.display_Result.html >-%%DATADIR%%/docs/FUNCTION.em.html >-%%DATADIR%%/docs/FUNCTION.emission_Probability.html >-%%DATADIR%%/docs/FUNCTION.empty.html >-%%DATADIR%%/docs/FUNCTION.empty_Parent_Edge.html >-%%DATADIR%%/docs/FUNCTION.empty_Source.html >-%%DATADIR%%/docs/FUNCTION.end.html >-%%DATADIR%%/docs/FUNCTION.end_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.end_Position.html >-%%DATADIR%%/docs/FUNCTION.end_Read.html >-%%DATADIR%%/docs/FUNCTION.end_State.html >-%%DATADIR%%/docs/FUNCTION.end_Write.html >-%%DATADIR%%/docs/FUNCTION.erase.html >-%%DATADIR%%/docs/FUNCTION.erase_Back.html >-%%DATADIR%%/docs/FUNCTION.expectation.html >-%%DATADIR%%/docs/FUNCTION.extend_Seed.html >-%%DATADIR%%/docs/FUNCTION.extend_Seed_Score.html >-%%DATADIR%%/docs/FUNCTION.extend_Seeds.html >-%%DATADIR%%/docs/FUNCTION.extend_Seeds_Score.html >-%%DATADIR%%/docs/FUNCTION.factorial.html >-%%DATADIR%%/docs/FUNCTION.find.html >-%%DATADIR%%/docs/FUNCTION.find_Begin.html >-%%DATADIR%%/docs/FUNCTION.find_Edge.html >-%%DATADIR%%/docs/FUNCTION.find_Intervals.html >-%%DATADIR%%/docs/FUNCTION.find_Intervals_Exclude_Touching.html >-%%DATADIR%%/docs/FUNCTION.find_Motif.html >-%%DATADIR%%/docs/FUNCTION.find_Vertex.html >-%%DATADIR%%/docs/FUNCTION.flatten.html >-%%DATADIR%%/docs/FUNCTION.floyd_Warshall_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.flush.html >-%%DATADIR%%/docs/FUNCTION.ford_Fulkerson_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.forward_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.fragment_Begin.html >-%%DATADIR%%/docs/FUNCTION.fragment_Length.html >-%%DATADIR%%/docs/FUNCTION.front.html >-%%DATADIR%%/docs/FUNCTION.gap_Value.html >-%%DATADIR%%/docs/FUNCTION.gap_Value_Impl.html >-%%DATADIR%%/docs/FUNCTION.generate_Sequence.html >-%%DATADIR%%/docs/FUNCTION.get_Adjacency_Matrix.html >-%%DATADIR%%/docs/FUNCTION.get_Alignment.html >-%%DATADIR%%/docs/FUNCTION.get_Argument_Value.html >-%%DATADIR%%/docs/FUNCTION.get_Argument_Values.html >-%%DATADIR%%/docs/FUNCTION.get_Begin_Score.html >-%%DATADIR%%/docs/FUNCTION.get_Begin_State.html >-%%DATADIR%%/docs/FUNCTION.get_Bit_Score.html >-%%DATADIR%%/docs/FUNCTION.get_Cargo.html >-%%DATADIR%%/docs/FUNCTION.get_Database_Begin.html >-%%DATADIR%%/docs/FUNCTION.get_Database_End.html >-%%DATADIR%%/docs/FUNCTION.get_Database_Name.html >-%%DATADIR%%/docs/FUNCTION.get_Distance_Matrix.html >-%%DATADIR%%/docs/FUNCTION.get_E_Value.html >-%%DATADIR%%/docs/FUNCTION.get_E_Value_Cutoff.html >-%%DATADIR%%/docs/FUNCTION.get_Emission_Probability.html >-%%DATADIR%%/docs/FUNCTION.get_End_State.html >-%%DATADIR%%/docs/FUNCTION.get_Fibre.html >-%%DATADIR%%/docs/FUNCTION.get_First_Covered_Position.html >-%%DATADIR%%/docs/FUNCTION.get_Frequency.html >-%%DATADIR%%/docs/FUNCTION.get_Gapped_Kappa.html >-%%DATADIR%%/docs/FUNCTION.get_Gapped_Lambda.html >-%%DATADIR%%/docs/FUNCTION.get_Get_Extension.html >-%%DATADIR%%/docs/FUNCTION.get_Get_Open.html >-%%DATADIR%%/docs/FUNCTION.get_Id_By_Name.html >-%%DATADIR%%/docs/FUNCTION.get_Id_Lower_Bound.html >-%%DATADIR%%/docs/FUNCTION.get_Id_Upper_Bound.html >-%%DATADIR%%/docs/FUNCTION.get_Kappa.html >-%%DATADIR%%/docs/FUNCTION.get_Kmer_Similarity_Matrix.html >-%%DATADIR%%/docs/FUNCTION.get_Lambda.html >-%%DATADIR%%/docs/FUNCTION.get_Last_Covered_Position.html >-%%DATADIR%%/docs/FUNCTION.get_Left_Boundary.html >-%%DATADIR%%/docs/FUNCTION.get_Mate_No.html >-%%DATADIR%%/docs/FUNCTION.get_Motif.html >-%%DATADIR%%/docs/FUNCTION.get_Next.html >-%%DATADIR%%/docs/FUNCTION.get_Next_S.html >-%%DATADIR%%/docs/FUNCTION.get_Next_T.html >-%%DATADIR%%/docs/FUNCTION.get_Nil.html >-%%DATADIR%%/docs/FUNCTION.get_Num_Gaps.html >-%%DATADIR%%/docs/FUNCTION.get_Occurrence.html >-%%DATADIR%%/docs/FUNCTION.get_Occurrences.html >-%%DATADIR%%/docs/FUNCTION.get_Occurrences_Bwt.html >-%%DATADIR%%/docs/FUNCTION.get_Option_Value_Long.html >-%%DATADIR%%/docs/FUNCTION.get_Option_Value_Short.html >-%%DATADIR%%/docs/FUNCTION.get_Option_Values_Long.html >-%%DATADIR%%/docs/FUNCTION.get_Option_Values_Short.html >-%%DATADIR%%/docs/FUNCTION.get_Projected_Position.html >-%%DATADIR%%/docs/FUNCTION.get_Property.html >-%%DATADIR%%/docs/FUNCTION.get_Query_Begin.html >-%%DATADIR%%/docs/FUNCTION.get_Query_End.html >-%%DATADIR%%/docs/FUNCTION.get_Query_Name.html >-%%DATADIR%%/docs/FUNCTION.get_Read.html >-%%DATADIR%%/docs/FUNCTION.get_Right_Boundary.html >-%%DATADIR%%/docs/FUNCTION.get_Root.html >-%%DATADIR%%/docs/FUNCTION.get_Score.html >-%%DATADIR%%/docs/FUNCTION.get_Seq_No.html >-%%DATADIR%%/docs/FUNCTION.get_Seq_Offset.html >-%%DATADIR%%/docs/FUNCTION.get_Source.html >-%%DATADIR%%/docs/FUNCTION.get_Step_Size.html >-%%DATADIR%%/docs/FUNCTION.get_String_Set.html >-%%DATADIR%%/docs/FUNCTION.get_Successor.html >-%%DATADIR%%/docs/FUNCTION.get_Swift_Hits.html >-%%DATADIR%%/docs/FUNCTION.get_Target.html >-%%DATADIR%%/docs/FUNCTION.get_Transition_Probability.html >-%%DATADIR%%/docs/FUNCTION.get_Value.html >-%%DATADIR%%/docs/FUNCTION.get_Value_By_Id.html >-%%DATADIR%%/docs/FUNCTION.global_Alignment.html >-%%DATADIR%%/docs/FUNCTION.global_Chaining.html >-%%DATADIR%%/docs/FUNCTION.global_Msa_Alignment.html >-%%DATADIR%%/docs/FUNCTION.go_Begin.html >-%%DATADIR%%/docs/FUNCTION.go_Down.html >-%%DATADIR%%/docs/FUNCTION.go_End.html >-%%DATADIR%%/docs/FUNCTION.go_Further.html >-%%DATADIR%%/docs/FUNCTION.go_Next.html >-%%DATADIR%%/docs/FUNCTION.go_Nil.html >-%%DATADIR%%/docs/FUNCTION.go_Previous.html >-%%DATADIR%%/docs/FUNCTION.go_Right.html >-%%DATADIR%%/docs/FUNCTION.go_Root.html >-%%DATADIR%%/docs/FUNCTION.go_Up.html >-%%DATADIR%%/docs/FUNCTION.guess_File_Format.html >-%%DATADIR%%/docs/FUNCTION.guess_Format.html >-%%DATADIR%%/docs/FUNCTION.guess_Format_From_Filename.html >-%%DATADIR%%/docs/FUNCTION.hamming_Distance.html >-%%DATADIR%%/docs/FUNCTION.has_Option_Long.html >-%%DATADIR%%/docs/FUNCTION.has_Option_Short.html >-%%DATADIR%%/docs/FUNCTION.has_Prefix.html >-%%DATADIR%%/docs/FUNCTION.hash.html >-%%DATADIR%%/docs/FUNCTION.hash2.html >-%%DATADIR%%/docs/FUNCTION.hash2_Next.html >-%%DATADIR%%/docs/FUNCTION.hash2_Upper.html >-%%DATADIR%%/docs/FUNCTION.hash_Next.html >-%%DATADIR%%/docs/FUNCTION.hash_Upper.html >-%%DATADIR%%/docs/FUNCTION.haystack.html >-%%DATADIR%%/docs/FUNCTION.heaviest_Increasing_Subsequence.html >-%%DATADIR%%/docs/FUNCTION.help.html >-%%DATADIR%%/docs/FUNCTION.help_Text.html >-%%DATADIR%%/docs/FUNCTION.host.html >-%%DATADIR%%/docs/FUNCTION.host_Graph.html >-%%DATADIR%%/docs/FUNCTION.host_Hit.html >-%%DATADIR%%/docs/FUNCTION.host_Report.html >-%%DATADIR%%/docs/FUNCTION.id.html >-%%DATADIR%%/docs/FUNCTION.id_Count.html >-%%DATADIR%%/docs/FUNCTION.id_In_Use.html >-%%DATADIR%%/docs/FUNCTION.id_To_Position.html >-%%DATADIR%%/docs/FUNCTION.in_Degree.html >-%%DATADIR%%/docs/FUNCTION.index_Bucket_Map.html >-%%DATADIR%%/docs/FUNCTION.index_Bwt.html >-%%DATADIR%%/docs/FUNCTION.index_Childtab.html >-%%DATADIR%%/docs/FUNCTION.index_Counts.html >-%%DATADIR%%/docs/FUNCTION.index_Counts_Dir.html >-%%DATADIR%%/docs/FUNCTION.index_Create.html >-%%DATADIR%%/docs/FUNCTION.index_Dir.html >-%%DATADIR%%/docs/FUNCTION.index_Lcp.html >-%%DATADIR%%/docs/FUNCTION.index_Lcpe.html >-%%DATADIR%%/docs/FUNCTION.index_Raw_S_A.html >-%%DATADIR%%/docs/FUNCTION.index_Raw_Text.html >-%%DATADIR%%/docs/FUNCTION.index_Require.html >-%%DATADIR%%/docs/FUNCTION.index_S_A.html >-%%DATADIR%%/docs/FUNCTION.index_Shape.html >-%%DATADIR%%/docs/FUNCTION.index_Supplied.html >-%%DATADIR%%/docs/FUNCTION.index_Text.html >-%%DATADIR%%/docs/FUNCTION.infimum_Value_Impl.html >-%%DATADIR%%/docs/FUNCTION.infix.html >-%%DATADIR%%/docs/FUNCTION.infix_With_Length.html >-%%DATADIR%%/docs/FUNCTION.insert.html >-%%DATADIR%%/docs/FUNCTION.insert_Gap.html >-%%DATADIR%%/docs/FUNCTION.insert_Gaps.html >-%%DATADIR%%/docs/FUNCTION.insert_Value.html >-%%DATADIR%%/docs/FUNCTION.integrate_Align.html >-%%DATADIR%%/docs/FUNCTION.inverse_Hash.html >-%%DATADIR%%/docs/FUNCTION.is_Boolean_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Double_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Equal.html >-%%DATADIR%%/docs/FUNCTION.is_Gap.html >-%%DATADIR%%/docs/FUNCTION.is_Greater.html >-%%DATADIR%%/docs/FUNCTION.is_Greater_Or_Equal.html >-%%DATADIR%%/docs/FUNCTION.is_Hidden_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Int_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Label_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Left_Maximal.html >-%%DATADIR%%/docs/FUNCTION.is_Less.html >-%%DATADIR%%/docs/FUNCTION.is_Less_Or_Equal.html >-%%DATADIR%%/docs/FUNCTION.is_Not_Equal.html >-%%DATADIR%%/docs/FUNCTION.is_Option_List.html >-%%DATADIR%%/docs/FUNCTION.is_Option_Mandatory.html >-%%DATADIR%%/docs/FUNCTION.is_Partially_Left_Extensible.html >-%%DATADIR%%/docs/FUNCTION.is_Prefix.html >-%%DATADIR%%/docs/FUNCTION.is_Reversed.html >-%%DATADIR%%/docs/FUNCTION.is_Right_Terminal.html >-%%DATADIR%%/docs/FUNCTION.is_Root.html >-%%DATADIR%%/docs/FUNCTION.is_Set_Long.html >-%%DATADIR%%/docs/FUNCTION.is_Set_Short.html >-%%DATADIR%%/docs/FUNCTION.is_Silent.html >-%%DATADIR%%/docs/FUNCTION.is_String_Option.html >-%%DATADIR%%/docs/FUNCTION.is_Unique.html >-%%DATADIR%%/docs/FUNCTION.iter.html >-%%DATADIR%%/docs/FUNCTION.key.html >-%%DATADIR%%/docs/FUNCTION.kruskals_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.label.html >-%%DATADIR%%/docs/FUNCTION.layout_Alignment.html >-%%DATADIR%%/docs/FUNCTION.lca.html >-%%DATADIR%%/docs/FUNCTION.lcp.html >-%%DATADIR%%/docs/FUNCTION.lcp_At.html >-%%DATADIR%%/docs/FUNCTION.lcp_Length.html >-%%DATADIR%%/docs/FUNCTION.lcpe_At.html >-%%DATADIR%%/docs/FUNCTION.left_Boundary.html >-%%DATADIR%%/docs/FUNCTION.left_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.left_Dim0.html >-%%DATADIR%%/docs/FUNCTION.left_Dim1.html >-%%DATADIR%%/docs/FUNCTION.left_Position.html >-%%DATADIR%%/docs/FUNCTION.length.html >-%%DATADIR%%/docs/FUNCTION.load_Contig.html >-%%DATADIR%%/docs/FUNCTION.load_Contigs.html >-%%DATADIR%%/docs/FUNCTION.load_Reads.html >-%%DATADIR%%/docs/FUNCTION.load_Score_Matrix.html >-%%DATADIR%%/docs/FUNCTION.local_Alignment.html >-%%DATADIR%%/docs/FUNCTION.lock_Contig.html >-%%DATADIR%%/docs/FUNCTION.lock_Contigs.html >-%%DATADIR%%/docs/FUNCTION.log2.html >-%%DATADIR%%/docs/FUNCTION.logarithmize.html >-%%DATADIR%%/docs/FUNCTION.long_Name.html >-%%DATADIR%%/docs/FUNCTION.longest_Common_Subsequence.html >-%%DATADIR%%/docs/FUNCTION.longest_Increasing_Subsequence.html >-%%DATADIR%%/docs/FUNCTION.lower_Bound_Aligned_Reads.html >-%%DATADIR%%/docs/FUNCTION.map_23add.html >-%%DATADIR%%/docs/FUNCTION.map_23cargo.html >-%%DATADIR%%/docs/FUNCTION.map_23erase.html >-%%DATADIR%%/docs/FUNCTION.map_23erase_All.html >-%%DATADIR%%/docs/FUNCTION.map_23find.html >-%%DATADIR%%/docs/FUNCTION.map_23has_Key.html >-%%DATADIR%%/docs/FUNCTION.map_23insert.html >-%%DATADIR%%/docs/FUNCTION.map_23value.html >-%%DATADIR%%/docs/FUNCTION.map_Value.html >-%%DATADIR%%/docs/FUNCTION.match_Refinement.html >-%%DATADIR%%/docs/FUNCTION.max_Value.html >-%%DATADIR%%/docs/FUNCTION.maximum_Distance.html >-%%DATADIR%%/docs/FUNCTION.min_Value.html >-%%DATADIR%%/docs/FUNCTION.motif_Count.html >-%%DATADIR%%/docs/FUNCTION.move.html >-%%DATADIR%%/docs/FUNCTION.move_Source.html >-%%DATADIR%%/docs/FUNCTION.move_Value.html >-%%DATADIR%%/docs/FUNCTION.mt_Rand.html >-%%DATADIR%%/docs/FUNCTION.mt_Rand_Double.html >-%%DATADIR%%/docs/FUNCTION.mt_Rand_Init.html >-%%DATADIR%%/docs/FUNCTION.multi_Local_Alignment.html >-%%DATADIR%%/docs/FUNCTION.needle.html >-%%DATADIR%%/docs/FUNCTION.next_S.html >-%%DATADIR%%/docs/FUNCTION.next_T.html >-%%DATADIR%%/docs/FUNCTION.node_Depth.html >-%%DATADIR%%/docs/FUNCTION.node_Hull_Predicate.html >-%%DATADIR%%/docs/FUNCTION.node_Predicate.html >-%%DATADIR%%/docs/FUNCTION.node_Up.html >-%%DATADIR%%/docs/FUNCTION.normalize.html >-%%DATADIR%%/docs/FUNCTION.num_Children.html >-%%DATADIR%%/docs/FUNCTION.num_Edges.html >-%%DATADIR%%/docs/FUNCTION.num_Hits.html >-%%DATADIR%%/docs/FUNCTION.num_Hsps.html >-%%DATADIR%%/docs/FUNCTION.num_Tree_Edges.html >-%%DATADIR%%/docs/FUNCTION.num_Vertices.html >-%%DATADIR%%/docs/FUNCTION.obtain_I_D.html >-%%DATADIR%%/docs/FUNCTION.obtain_Id.html >-%%DATADIR%%/docs/FUNCTION.open.html >-%%DATADIR%%/docs/FUNCTION.open_Temp.html >-%%DATADIR%%/docs/FUNCTION.ord_Value.html >-%%DATADIR%%/docs/FUNCTION.order_Occurrences.html >-%%DATADIR%%/docs/FUNCTION.out_Degree.html >-%%DATADIR%%/docs/FUNCTION.parent_Edge_First_Char.html >-%%DATADIR%%/docs/FUNCTION.parent_Edge_Label.html >-%%DATADIR%%/docs/FUNCTION.parent_Edge_Length.html >-%%DATADIR%%/docs/FUNCTION.parent_Rep_Length.html >-%%DATADIR%%/docs/FUNCTION.parent_Vertex.html >-%%DATADIR%%/docs/FUNCTION.parse.html >-%%DATADIR%%/docs/FUNCTION.parse_String.html >-%%DATADIR%%/docs/FUNCTION.pick_Random_Number.html >-%%DATADIR%%/docs/FUNCTION.pop.html >-%%DATADIR%%/docs/FUNCTION.pos_Globalize.html >-%%DATADIR%%/docs/FUNCTION.pos_Local_To_X.html >-%%DATADIR%%/docs/FUNCTION.pos_Localize.html >-%%DATADIR%%/docs/FUNCTION.pos_Of_Max.html >-%%DATADIR%%/docs/FUNCTION.position.html >-%%DATADIR%%/docs/FUNCTION.position_Range.html >-%%DATADIR%%/docs/FUNCTION.position_Range_No_Clip.html >-%%DATADIR%%/docs/FUNCTION.position_To_Id.html >-%%DATADIR%%/docs/FUNCTION.prefix.html >-%%DATADIR%%/docs/FUNCTION.prepend_Value.html >-%%DATADIR%%/docs/FUNCTION.prims_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.print_Alignment.html >-%%DATADIR%%/docs/FUNCTION.print_Debug_Level.html >-%%DATADIR%%/docs/FUNCTION.progressive_Alignment.html >-%%DATADIR%%/docs/FUNCTION.property.html >-%%DATADIR%%/docs/FUNCTION.push.html >-%%DATADIR%%/docs/FUNCTION.quality_Value.html >-%%DATADIR%%/docs/FUNCTION.query_Name.html >-%%DATADIR%%/docs/FUNCTION.query_Orientation_Plus.html >-%%DATADIR%%/docs/FUNCTION.range.html >-%%DATADIR%%/docs/FUNCTION.rawsa_At.html >-%%DATADIR%%/docs/FUNCTION.rawtext_At.html >-%%DATADIR%%/docs/FUNCTION.re_Align.html >-%%DATADIR%%/docs/FUNCTION.read.html >-%%DATADIR%%/docs/FUNCTION.read_At.html >-%%DATADIR%%/docs/FUNCTION.read_Feature.html >-%%DATADIR%%/docs/FUNCTION.read_Line_Type.html >-%%DATADIR%%/docs/FUNCTION.read_Meta.html >-%%DATADIR%%/docs/FUNCTION.refresh.html >-%%DATADIR%%/docs/FUNCTION.release_All.html >-%%DATADIR%%/docs/FUNCTION.release_I_D.html >-%%DATADIR%%/docs/FUNCTION.release_Id.html >-%%DATADIR%%/docs/FUNCTION.remove_All_Children.html >-%%DATADIR%%/docs/FUNCTION.remove_Child.html >-%%DATADIR%%/docs/FUNCTION.remove_Edge.html >-%%DATADIR%%/docs/FUNCTION.remove_Gap.html >-%%DATADIR%%/docs/FUNCTION.remove_Gaps.html >-%%DATADIR%%/docs/FUNCTION.remove_In_Edges.html >-%%DATADIR%%/docs/FUNCTION.remove_Out_Edges.html >-%%DATADIR%%/docs/FUNCTION.remove_Value_By_Id.html >-%%DATADIR%%/docs/FUNCTION.remove_Vertex.html >-%%DATADIR%%/docs/FUNCTION.rep_Length.html >-%%DATADIR%%/docs/FUNCTION.replace.html >-%%DATADIR%%/docs/FUNCTION.representative.html >-%%DATADIR%%/docs/FUNCTION.required_Arguments.html >-%%DATADIR%%/docs/FUNCTION.reserve.html >-%%DATADIR%%/docs/FUNCTION.resize.html >-%%DATADIR%%/docs/FUNCTION.resize_Edge_Map.html >-%%DATADIR%%/docs/FUNCTION.resize_Space.html >-%%DATADIR%%/docs/FUNCTION.resize_Vertex_Map.html >-%%DATADIR%%/docs/FUNCTION.reverse.html >-%%DATADIR%%/docs/FUNCTION.reverse_Complement.html >-%%DATADIR%%/docs/FUNCTION.rewind.html >-%%DATADIR%%/docs/FUNCTION.right_Boundary.html >-%%DATADIR%%/docs/FUNCTION.right_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.right_Dim0.html >-%%DATADIR%%/docs/FUNCTION.right_Dim1.html >-%%DATADIR%%/docs/FUNCTION.right_Position.html >-%%DATADIR%%/docs/FUNCTION.root.html >-%%DATADIR%%/docs/FUNCTION.row.html >-%%DATADIR%%/docs/FUNCTION.rows.html >-%%DATADIR%%/docs/FUNCTION.sa_At.html >-%%DATADIR%%/docs/FUNCTION.score.html >-%%DATADIR%%/docs/FUNCTION.score_Gap.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Extend.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Extend_Horizontal.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Extend_Vertical.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Horizontal.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Open.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Open_Horizontal.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Open_Vertical.html >-%%DATADIR%%/docs/FUNCTION.score_Gap_Vertical.html >-%%DATADIR%%/docs/FUNCTION.score_Limit.html >-%%DATADIR%%/docs/FUNCTION.score_Match.html >-%%DATADIR%%/docs/FUNCTION.score_Mismatch.html >-%%DATADIR%%/docs/FUNCTION.score_Seed.html >-%%DATADIR%%/docs/FUNCTION.scoring_Scheme.html >-%%DATADIR%%/docs/FUNCTION.seed_Score.html >-%%DATADIR%%/docs/FUNCTION.seek.html >-%%DATADIR%%/docs/FUNCTION.sequence_Id.html >-%%DATADIR%%/docs/FUNCTION.set.html >-%%DATADIR%%/docs/FUNCTION.set_Begin.html >-%%DATADIR%%/docs/FUNCTION.set_Begin_Position.html >-%%DATADIR%%/docs/FUNCTION.set_Default_Score_Matrix.html >-%%DATADIR%%/docs/FUNCTION.set_End.html >-%%DATADIR%%/docs/FUNCTION.set_End_Position.html >-%%DATADIR%%/docs/FUNCTION.set_Eof.html >-%%DATADIR%%/docs/FUNCTION.set_Haystack.html >-%%DATADIR%%/docs/FUNCTION.set_Help_Text.html >-%%DATADIR%%/docs/FUNCTION.set_Host.html >-%%DATADIR%%/docs/FUNCTION.set_Left_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.set_Left_Dim0.html >-%%DATADIR%%/docs/FUNCTION.set_Left_Dim1.html >-%%DATADIR%%/docs/FUNCTION.set_Left_Position.html >-%%DATADIR%%/docs/FUNCTION.set_Long_Name.html >-%%DATADIR%%/docs/FUNCTION.set_Maximum_Distance.html >-%%DATADIR%%/docs/FUNCTION.set_Needle.html >-%%DATADIR%%/docs/FUNCTION.set_Option_Type.html >-%%DATADIR%%/docs/FUNCTION.set_Position.html >-%%DATADIR%%/docs/FUNCTION.set_Quality_Value.html >-%%DATADIR%%/docs/FUNCTION.set_Right_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.set_Right_Dim0.html >-%%DATADIR%%/docs/FUNCTION.set_Right_Dim1.html >-%%DATADIR%%/docs/FUNCTION.set_Right_Position.html >-%%DATADIR%%/docs/FUNCTION.set_Score.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Gap.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Gap_Extend.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Gap_Open.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Limit.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Match.html >-%%DATADIR%%/docs/FUNCTION.set_Score_Mismatch.html >-%%DATADIR%%/docs/FUNCTION.set_Scoring_Scheme.html >-%%DATADIR%%/docs/FUNCTION.set_Short_Name.html >-%%DATADIR%%/docs/FUNCTION.set_Source.html >-%%DATADIR%%/docs/FUNCTION.set_Step_Size.html >-%%DATADIR%%/docs/FUNCTION.set_Strings.html >-%%DATADIR%%/docs/FUNCTION.set_Value.html >-%%DATADIR%%/docs/FUNCTION.shape_To_String.html >-%%DATADIR%%/docs/FUNCTION.share_Resources.html >-%%DATADIR%%/docs/FUNCTION.short_Help.html >-%%DATADIR%%/docs/FUNCTION.short_Name.html >-%%DATADIR%%/docs/FUNCTION.shrink_To_Fit.html >-%%DATADIR%%/docs/FUNCTION.shuffle.html >-%%DATADIR%%/docs/FUNCTION.silent_Status.html >-%%DATADIR%%/docs/FUNCTION.size.html >-%%DATADIR%%/docs/FUNCTION.slow_Nj_Tree.html >-%%DATADIR%%/docs/FUNCTION.sort_Aligned_Reads.html >-%%DATADIR%%/docs/FUNCTION.source.html >-%%DATADIR%%/docs/FUNCTION.source_Begin.html >-%%DATADIR%%/docs/FUNCTION.source_End.html >-%%DATADIR%%/docs/FUNCTION.source_Length.html >-%%DATADIR%%/docs/FUNCTION.source_Segment.html >-%%DATADIR%%/docs/FUNCTION.source_Vertex.html >-%%DATADIR%%/docs/FUNCTION.split.html >-%%DATADIR%%/docs/FUNCTION.start_Diagonal.html >-%%DATADIR%%/docs/FUNCTION.string_Set.html >-%%DATADIR%%/docs/FUNCTION.string_Set_Limits.html >-%%DATADIR%%/docs/FUNCTION.string_To_Shape.html >-%%DATADIR%%/docs/FUNCTION.strongly_Connected_Components.html >-%%DATADIR%%/docs/FUNCTION.suffix.html >-%%DATADIR%%/docs/FUNCTION.sum.html >-%%DATADIR%%/docs/FUNCTION.sum_Of_Pairs_Score.html >-%%DATADIR%%/docs/FUNCTION.supremum_Value_Impl.html >-%%DATADIR%%/docs/FUNCTION.swap.html >-%%DATADIR%%/docs/FUNCTION.sys_Time.html >-%%DATADIR%%/docs/FUNCTION.target.html >-%%DATADIR%%/docs/FUNCTION.target_Vertex.html >-%%DATADIR%%/docs/FUNCTION.tell.html >-%%DATADIR%%/docs/FUNCTION.text_At.html >-%%DATADIR%%/docs/FUNCTION.to_C_String.html >-%%DATADIR%%/docs/FUNCTION.to_Lower.html >-%%DATADIR%%/docs/FUNCTION.to_Source_Position.html >-%%DATADIR%%/docs/FUNCTION.to_Upper.html >-%%DATADIR%%/docs/FUNCTION.to_View_Position.html >-%%DATADIR%%/docs/FUNCTION.topological_Sort.html >-%%DATADIR%%/docs/FUNCTION.transition_Probability.html >-%%DATADIR%%/docs/FUNCTION.transitive_Closure.html >-%%DATADIR%%/docs/FUNCTION.transpose.html >-%%DATADIR%%/docs/FUNCTION.triplet_Library_Extension.html >-%%DATADIR%%/docs/FUNCTION.unlock_And_Free_Contig.html >-%%DATADIR%%/docs/FUNCTION.unlock_And_Free_Contigs.html >-%%DATADIR%%/docs/FUNCTION.unlock_Contig.html >-%%DATADIR%%/docs/FUNCTION.unlock_Contigs.html >-%%DATADIR%%/docs/FUNCTION.upgma_Tree.html >-%%DATADIR%%/docs/FUNCTION.upper_Bound_Aligned_Reads.html >-%%DATADIR%%/docs/FUNCTION.value.html >-%%DATADIR%%/docs/FUNCTION.value_By_Id.html >-%%DATADIR%%/docs/FUNCTION.value_Construct.html >-%%DATADIR%%/docs/FUNCTION.value_Construct_Move.html >-%%DATADIR%%/docs/FUNCTION.value_Destruct.html >-%%DATADIR%%/docs/FUNCTION.variance.html >-%%DATADIR%%/docs/FUNCTION.version.html >-%%DATADIR%%/docs/FUNCTION.viterbi_Algorithm.html >-%%DATADIR%%/docs/FUNCTION.wait_For.html >-%%DATADIR%%/docs/FUNCTION.weight.html >-%%DATADIR%%/docs/FUNCTION.window_Find_Begin.html >-%%DATADIR%%/docs/FUNCTION.window_Find_End.html >-%%DATADIR%%/docs/FUNCTION.window_Find_Next.html >-%%DATADIR%%/docs/FUNCTION.write.html >-%%DATADIR%%/docs/FUNCTION.write_At.html >-%%DATADIR%%/docs/FUNCTION.write_Contigs.html >-%%DATADIR%%/docs/FUNCTION.zscore.html >-%%DATADIR%%/docs/FUNCTION_Allocator_23clear.html >-%%DATADIR%%/docs/FUNCTION_Automaton_23label.html >-%%DATADIR%%/docs/FUNCTION_Blast_23get_Blast_Match_Score.html >-%%DATADIR%%/docs/FUNCTION_Fileformat_23read.html >-%%DATADIR%%/docs/FUNCTION_Fileformat_23write.html >-%%DATADIR%%/docs/FUNCTION_Graph_23assign_Source.html >-%%DATADIR%%/docs/FUNCTION_Graph_23is_Leaf.html >-%%DATADIR%%/docs/FUNCTION_Graph_23is_Root.html >-%%DATADIR%%/docs/FUNCTION_Index_23is_Leaf.html >-%%DATADIR%%/docs/FUNCTION_Pipelining_23front.html >-%%DATADIR%%/docs/FUNCTION_Priority_Type_23pop.html >-%%DATADIR%%/docs/FUNCTION_Priority_Type_23push.html >-%%DATADIR%%/docs/FUNCTION_Priority_Type_23top.html >-%%DATADIR%%/docs/INDEXPAGE_Adaption.html >-%%DATADIR%%/docs/INDEXPAGE_Class.html >-%%DATADIR%%/docs/INDEXPAGE_Concept.html >-%%DATADIR%%/docs/INDEXPAGE_Demo.html >-%%DATADIR%%/docs/INDEXPAGE_Function.html >-%%DATADIR%%/docs/INDEXPAGE_Metafunction.html >-%%DATADIR%%/docs/INDEXPAGE_Shortcut.html >-%%DATADIR%%/docs/INDEXPAGE_Spec.html >-%%DATADIR%%/docs/INDEXPAGE_Tag.html >-%%DATADIR%%/docs/INDEX_Adaption.html >-%%DATADIR%%/docs/INDEX_Class.html >-%%DATADIR%%/docs/INDEX_Class_Aggregates.html >-%%DATADIR%%/docs/INDEX_Class_Alignments.html >-%%DATADIR%%/docs/INDEX_Class_Basic.html >-%%DATADIR%%/docs/INDEX_Class_Blast.html >-%%DATADIR%%/docs/INDEX_Class_Fragment+_Store.html >-%%DATADIR%%/docs/INDEX_Class_Graph.html >-%%DATADIR%%/docs/INDEX_Class_Index.html >-%%DATADIR%%/docs/INDEX_Class_Input_2f_Output.html >-%%DATADIR%%/docs/INDEX_Class_Map.html >-%%DATADIR%%/docs/INDEX_Class_Markov_Model.html >-%%DATADIR%%/docs/INDEX_Class_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Class_Modifier.html >-%%DATADIR%%/docs/INDEX_Class_Motif+_Search.html >-%%DATADIR%%/docs/INDEX_Class_Pipelining.html >-%%DATADIR%%/docs/INDEX_Class_Random.html >-%%DATADIR%%/docs/INDEX_Class_Searching.html >-%%DATADIR%%/docs/INDEX_Class_Seed+_Handling.html >-%%DATADIR%%/docs/INDEX_Class_Sequences.html >-%%DATADIR%%/docs/INDEX_Concept.html >-%%DATADIR%%/docs/INDEX_Demo.html >-%%DATADIR%%/docs/INDEX_Demo_Basics.html >-%%DATADIR%%/docs/INDEX_Demo_Graph.html >-%%DATADIR%%/docs/INDEX_Demo_Index.html >-%%DATADIR%%/docs/INDEX_Demo_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Demo_Modifier.html >-%%DATADIR%%/docs/INDEX_Demo_Motif+_Search.html >-%%DATADIR%%/docs/INDEX_Demo_Searching.html >-%%DATADIR%%/docs/INDEX_Demo_System.html >-%%DATADIR%%/docs/INDEX_Function.html >-%%DATADIR%%/docs/INDEX_Function.sequences.html >-%%DATADIR%%/docs/INDEX_Function_Alignments.html >-%%DATADIR%%/docs/INDEX_Function_Alphabets.html >-%%DATADIR%%/docs/INDEX_Function_Array+_Handling.html >-%%DATADIR%%/docs/INDEX_Function_Atomic+_Operations.html >-%%DATADIR%%/docs/INDEX_Function_Blast.html >-%%DATADIR%%/docs/INDEX_Function_Chaining.html >-%%DATADIR%%/docs/INDEX_Function_Class._Align.html >-%%DATADIR%%/docs/INDEX_Function_Class.html >-%%DATADIR%%/docs/INDEX_Function_Comparisons.html >-%%DATADIR%%/docs/INDEX_Function_Containers.html >-%%DATADIR%%/docs/INDEX_Function_Content+_Manipulation.html >-%%DATADIR%%/docs/INDEX_Function_Dependent+_Objects.html >-%%DATADIR%%/docs/INDEX_Function_Fragment+_Store.html >-%%DATADIR%%/docs/INDEX_Function_Graph.html >-%%DATADIR%%/docs/INDEX_Function_Index.html >-%%DATADIR%%/docs/INDEX_Function_Input_2f_Output.html >-%%DATADIR%%/docs/INDEX_Function_Iteration.html >-%%DATADIR%%/docs/INDEX_Function_Map.html >-%%DATADIR%%/docs/INDEX_Function_Memory.html >-%%DATADIR%%/docs/INDEX_Function_Misc.html >-%%DATADIR%%/docs/INDEX_Function_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Function_Miscellaneous_3a.html >-%%DATADIR%%/docs/INDEX_Function_Modifier.html >-%%DATADIR%%/docs/INDEX_Function_Modifiers.html >-%%DATADIR%%/docs/INDEX_Function_Motif+_Search.html >-%%DATADIR%%/docs/INDEX_Function_Pipelining.html >-%%DATADIR%%/docs/INDEX_Function_Random.html >-%%DATADIR%%/docs/INDEX_Function_Scoring.html >-%%DATADIR%%/docs/INDEX_Function_Searching.html >-%%DATADIR%%/docs/INDEX_Function_Seed+_Handling.html >-%%DATADIR%%/docs/INDEX_Function_Sequences.html >-%%DATADIR%%/docs/INDEX_Metafunction.html >-%%DATADIR%%/docs/INDEX_Metafunction_Basic.html >-%%DATADIR%%/docs/INDEX_Metafunction_Index.html >-%%DATADIR%%/docs/INDEX_Metafunction_Map.html >-%%DATADIR%%/docs/INDEX_Metafunction_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Metafunction_Searching.html >-%%DATADIR%%/docs/INDEX_Metafunction_Sequences.html >-%%DATADIR%%/docs/INDEX_Page.html >-%%DATADIR%%/docs/INDEX_Shortcut.html >-%%DATADIR%%/docs/INDEX_Shortcut_Input_2f_Output.html >-%%DATADIR%%/docs/INDEX_Shortcut_Iterators.html >-%%DATADIR%%/docs/INDEX_Shortcut_Modifier.html >-%%DATADIR%%/docs/INDEX_Shortcut_Pattern+_Matching.html >-%%DATADIR%%/docs/INDEX_Shortcut_Scoring.html >-%%DATADIR%%/docs/INDEX_Shortcut_Strings.html >-%%DATADIR%%/docs/INDEX_Spec.html >-%%DATADIR%%/docs/INDEX_Spec_Aggregates.html >-%%DATADIR%%/docs/INDEX_Spec_Alignments.html >-%%DATADIR%%/docs/INDEX_Spec_Allocators.html >-%%DATADIR%%/docs/INDEX_Spec_Alphabets.html >-%%DATADIR%%/docs/INDEX_Spec_Blast.html >-%%DATADIR%%/docs/INDEX_Spec_Chaining.html >-%%DATADIR%%/docs/INDEX_Spec_Files.html >-%%DATADIR%%/docs/INDEX_Spec_Graph.html >-%%DATADIR%%/docs/INDEX_Spec_Holders.html >-%%DATADIR%%/docs/INDEX_Spec_Index.html >-%%DATADIR%%/docs/INDEX_Spec_Iterators.html >-%%DATADIR%%/docs/INDEX_Spec_Map.html >-%%DATADIR%%/docs/INDEX_Spec_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Spec_Modifier.html >-%%DATADIR%%/docs/INDEX_Spec_Motif+_Search.html >-%%DATADIR%%/docs/INDEX_Spec_Pattern+_Matching.html >-%%DATADIR%%/docs/INDEX_Spec_Pipelining.html >-%%DATADIR%%/docs/INDEX_Spec_Proxies.html >-%%DATADIR%%/docs/INDEX_Spec_Random.html >-%%DATADIR%%/docs/INDEX_Spec_Scoring.html >-%%DATADIR%%/docs/INDEX_Spec_Searching.html >-%%DATADIR%%/docs/INDEX_Spec_Seed+_Handling.html >-%%DATADIR%%/docs/INDEX_Spec_Segments.html >-%%DATADIR%%/docs/INDEX_Spec_Sequences.html >-%%DATADIR%%/docs/INDEX_Spec_Strings.html >-%%DATADIR%%/docs/INDEX_Tag.html >-%%DATADIR%%/docs/INDEX_Tag_Fragment+_Store.html >-%%DATADIR%%/docs/INDEX_Tag_Index.html >-%%DATADIR%%/docs/INDEX_Tag_Miscellaneous.html >-%%DATADIR%%/docs/INDEX_Tag_Motif+_Search.html >-%%DATADIR%%/docs/INDEX_Tag_Random.html >-%%DATADIR%%/docs/INDEX_Tag_Scoring.html >-%%DATADIR%%/docs/INDEX_Tag_Searching.html >-%%DATADIR%%/docs/INDEX_Tag_Seed+_Handling.html >-%%DATADIR%%/docs/INDEX_Tag_Strings.html >-%%DATADIR%%/docs/MEMFUNC.~_Holder.html >-%%DATADIR%%/docs/MEMFUNC_Adaptor_Iterator_23_Iter.html >-%%DATADIR%%/docs/MEMFUNC_Align_Quality_Store_Element_23_Align_Quality_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Aligned_Read_Store_Element_23_Aligned_Read_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Bottom_Up+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Chained_Seed_23_Seed.html >-%%DATADIR%%/docs/MEMFUNC_Command_Line_Option_23_Command_Line_Option.html >-%%DATADIR%%/docs/MEMFUNC_Command_Line_Parser_23_Command_Line_Parser.html >-%%DATADIR%%/docs/MEMFUNC_Concat_Virtual+_Iterator_23_Iter.html >-%%DATADIR%%/docs/MEMFUNC_Concatenator_Many_To_One_23_Concatenator_Many_To_One.html >-%%DATADIR%%/docs/MEMFUNC_Contig_Store_Element_23_Contig_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Ext_String_23_String.html >-%%DATADIR%%/docs/MEMFUNC_Filter_23_Pipe.html >-%%DATADIR%%/docs/MEMFUNC_Finder_23_Finder.html >-%%DATADIR%%/docs/MEMFUNC_Fragment_23_Fragment.html >-%%DATADIR%%/docs/MEMFUNC_Gap_Anchor_23_Gap_Anchor.html >-%%DATADIR%%/docs/MEMFUNC_Gaps_23_Gaps.html >-%%DATADIR%%/docs/MEMFUNC_Generic_Shape_23_Shape.html >-%%DATADIR%%/docs/MEMFUNC_Geometric+_Pdf_23_Pdf.html >-%%DATADIR%%/docs/MEMFUNC_Holder.html >-%%DATADIR%%/docs/MEMFUNC_Infix_Segment_23_Segment.html >-%%DATADIR%%/docs/MEMFUNC_Interval_And_Cargo_23_Interval_And_Cargo.html >-%%DATADIR%%/docs/MEMFUNC_Interval_Tree_23_Interval_Tree.html >-%%DATADIR%%/docs/MEMFUNC_Interval_Tree_Node_23_Interval_Tree_Node.html >-%%DATADIR%%/docs/MEMFUNC_Library_Store_Element_23_Library_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Local_Alignment_Finder_23_Local_Alignment_Finder.html >-%%DATADIR%%/docs/MEMFUNC_Log-_Normal+_Pdf_23_Pdf.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23_Markov_Model.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23build.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23emitted_Probability.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23read.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23set.html >-%%DATADIR%%/docs/MEMFUNC_Markov_Model_23write.html >-%%DATADIR%%/docs/MEMFUNC_Mate_Pair_Store_Element_23_Mate_Pair_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Max_Repeats+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Mersenne+_Twister+_Rng_23_Rng.html >-%%DATADIR%%/docs/MEMFUNC_Multi_Mems+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Mums+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Namer_23_Pipe.html >-%%DATADIR%%/docs/MEMFUNC_Normal+_Pdf_23_Pdf.html >-%%DATADIR%%/docs/MEMFUNC_One_Gapped_Shape_23_Shape.html >-%%DATADIR%%/docs/MEMFUNC_Pair_23_Pair.html >-%%DATADIR%%/docs/MEMFUNC_Pipe_23_Pipe.html >-%%DATADIR%%/docs/MEMFUNC_Point_And_Cargo_23_Point_And_Cargo.html >-%%DATADIR%%/docs/MEMFUNC_Position_Iterator_23_Iter.html >-%%DATADIR%%/docs/MEMFUNC_Prefix_Segment_23_Segment.html >-%%DATADIR%%/docs/MEMFUNC_Read_Store_Element_23_Read_Store_Element.html >-%%DATADIR%%/docs/MEMFUNC_Rng+_Functor_23_Rng.html >-%%DATADIR%%/docs/MEMFUNC_Rng_23operator_28_29.html >-%%DATADIR%%/docs/MEMFUNC_Score+_Matrix_23_Score.html >-%%DATADIR%%/docs/MEMFUNC_Score_23_Score.html >-%%DATADIR%%/docs/MEMFUNC_Seed_Set_23_Seed_Set.html >-%%DATADIR%%/docs/MEMFUNC_Shape_23_Shape.html >-%%DATADIR%%/docs/MEMFUNC_Simple_Seed_23_Seed.html >-%%DATADIR%%/docs/MEMFUNC_Simple_Shape_23_Shape.html >-%%DATADIR%%/docs/MEMFUNC_Suffix_Segment_23_Segment.html >-%%DATADIR%%/docs/MEMFUNC_Super_Max_Repeats+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Super_Max_Repeats_Fast+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_To_Std_Allocator.html >-%%DATADIR%%/docs/MEMFUNC_Top_Down+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Top_Down_History+_Iterator_23_Iterator.html >-%%DATADIR%%/docs/MEMFUNC_Triple_23_Triple.html >-%%DATADIR%%/docs/MEMVAR_Align_Quality_Store_Element_23errors.html >-%%DATADIR%%/docs/MEMVAR_Align_Quality_Store_Element_23pair_Score.html >-%%DATADIR%%/docs/MEMVAR_Align_Quality_Store_Element_23score.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Layout_23contig_Rows.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23_I_N_V_A_L_I_D___I_D.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23begin_Pos.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23contig_Id.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23end_Pos.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23gaps.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23id.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23pair_Match_Id.html >-%%DATADIR%%/docs/MEMVAR_Aligned_Read_Store_Element_23read_Id.html >-%%DATADIR%%/docs/MEMVAR_Bundle2_23in1.html >-%%DATADIR%%/docs/MEMVAR_Bundle2_23in2.html >-%%DATADIR%%/docs/MEMVAR_Bundle3_23in1.html >-%%DATADIR%%/docs/MEMVAR_Bundle3_23in2.html >-%%DATADIR%%/docs/MEMVAR_Bundle3_23in3.html >-%%DATADIR%%/docs/MEMVAR_Bundle5_23in1.html >-%%DATADIR%%/docs/MEMVAR_Bundle5_23in2.html >-%%DATADIR%%/docs/MEMVAR_Bundle5_23in3.html >-%%DATADIR%%/docs/MEMVAR_Bundle5_23in4.html >-%%DATADIR%%/docs/MEMVAR_Bundle5_23in5.html >-%%DATADIR%%/docs/MEMVAR_Concat_Direct_23concat.html >-%%DATADIR%%/docs/MEMVAR_Contig_File_23file_Name.html >-%%DATADIR%%/docs/MEMVAR_Contig_File_23first_Contig_Id.html >-%%DATADIR%%/docs/MEMVAR_Contig_File_23format.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23_I_N_V_A_L_I_D___I_D.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23file_Begin_Pos.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23file_End_Pos.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23file_Id.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23gaps.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23seq.html >-%%DATADIR%%/docs/MEMVAR_Contig_Store_Element_23usage.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23align_Quality_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23aligned_Read_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23aligned_Read_Tag_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23annotation_Name_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23annotation_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23contig_File_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23contig_Name_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23contig_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23library_Name_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23library_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23mate_Pair_Name_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23mate_Pair_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23read_Name_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23read_Seq_Store.html >-%%DATADIR%%/docs/MEMVAR_Fragment_Store_23read_Store.html >-%%DATADIR%%/docs/MEMVAR_Gap_Anchor_23gap_Pos.html >-%%DATADIR%%/docs/MEMVAR_Gap_Anchor_23seq_Pos.html >-%%DATADIR%%/docs/MEMVAR_Interval_And_Cargo_23cargo.html >-%%DATADIR%%/docs/MEMVAR_Interval_And_Cargo_23i1.html >-%%DATADIR%%/docs/MEMVAR_Interval_And_Cargo_23i2.html >-%%DATADIR%%/docs/MEMVAR_Interval_Tree_Node_23center.html >-%%DATADIR%%/docs/MEMVAR_Interval_Tree_Node_23list1.html >-%%DATADIR%%/docs/MEMVAR_Interval_Tree_Node_23list2.html >-%%DATADIR%%/docs/MEMVAR_Library_Store_Element_23mean.html >-%%DATADIR%%/docs/MEMVAR_Library_Store_Element_23std.html >-%%DATADIR%%/docs/MEMVAR_Markov_Model_23order.html >-%%DATADIR%%/docs/MEMVAR_Markov_Model_23stationary_Distribution.html >-%%DATADIR%%/docs/MEMVAR_Markov_Model_23transition.html >-%%DATADIR%%/docs/MEMVAR_Mate_Pair_Store_Element_23_I_N_V_A_L_I_D___I_D.html >-%%DATADIR%%/docs/MEMVAR_Mate_Pair_Store_Element_23lib_Id.html >-%%DATADIR%%/docs/MEMVAR_Mate_Pair_Store_Element_23read_Id[2].html >-%%DATADIR%%/docs/MEMVAR_Name_Store_Cache_23_Name_Store_Cache.html >-%%DATADIR%%/docs/MEMVAR_Open_Addressing_23alpha.html >-%%DATADIR%%/docs/MEMVAR_Pair_23i1.html >-%%DATADIR%%/docs/MEMVAR_Pair_23i2.html >-%%DATADIR%%/docs/MEMVAR_Point_And_Cargo_23cargo.html >-%%DATADIR%%/docs/MEMVAR_Point_And_Cargo_23point.html >-%%DATADIR%%/docs/MEMVAR_Read_Store_Element_23_I_N_V_A_L_I_D___I_D.html >-%%DATADIR%%/docs/MEMVAR_Read_Store_Element_23mate_Pair_Id.html >-%%DATADIR%%/docs/MEMVAR_Tag_Selector_23tag_Id.html >-%%DATADIR%%/docs/MEMVAR_Triple_23i1.html >-%%DATADIR%%/docs/MEMVAR_Triple_23i2.html >-%%DATADIR%%/docs/MEMVAR_Triple_23i3.html >-%%DATADIR%%/docs/METAFUNCTION_Allows_Fast_Random_Access.html >-%%DATADIR%%/docs/METAFUNCTION_Alphabet.html >-%%DATADIR%%/docs/METAFUNCTION_Bits_Per_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Bytes_Per_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Cargo.html >-%%DATADIR%%/docs/METAFUNCTION_Col.html >-%%DATADIR%%/docs/METAFUNCTION_Cols.html >-%%DATADIR%%/docs/METAFUNCTION_Comparator.html >-%%DATADIR%%/docs/METAFUNCTION_Compare_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Concatenator.html >-%%DATADIR%%/docs/METAFUNCTION_Container.html >-%%DATADIR%%/docs/METAFUNCTION_Convert.html >-%%DATADIR%%/docs/METAFUNCTION_Deepest_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Find_Begin_Pattern_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Finder.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Get_Iterator_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Index_Creator.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Index_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Index_String_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Iterator_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Overflow_Explicit.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Overflow_Implicit.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Pattern.html >-%%DATADIR%%/docs/METAFUNCTION_Default_Prefix_Order.html >-%%DATADIR%%/docs/METAFUNCTION_Difference.html >-%%DATADIR%%/docs/METAFUNCTION_Edge_Descriptor.html >-%%DATADIR%%/docs/METAFUNCTION_Edge_Id_Handler.html >-%%DATADIR%%/docs/METAFUNCTION_Edge_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Fibre.html >-%%DATADIR%%/docs/METAFUNCTION_Gapped_Value_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Get_Source.html >-%%DATADIR%%/docs/METAFUNCTION_Get_V_S_Tree_Iterator_Traits.html >-%%DATADIR%%/docs/METAFUNCTION_Get_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Haystack.html >-%%DATADIR%%/docs/METAFUNCTION_Hit.html >-%%DATADIR%%/docs/METAFUNCTION_Host.html >-%%DATADIR%%/docs/METAFUNCTION_Hsp.html >-%%DATADIR%%/docs/METAFUNCTION_Id.html >-%%DATADIR%%/docs/METAFUNCTION_Infix.html >-%%DATADIR%%/docs/METAFUNCTION_Insertion_Buffer.html >-%%DATADIR%%/docs/METAFUNCTION_Integral_For_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Is_Contiguous.html >-%%DATADIR%%/docs/METAFUNCTION_Is_Integral.html >-%%DATADIR%%/docs/METAFUNCTION_Is_Sequence.html >-%%DATADIR%%/docs/METAFUNCTION_Is_Simple.html >-%%DATADIR%%/docs/METAFUNCTION_Iter_Complement_Const.html >-%%DATADIR%%/docs/METAFUNCTION_Iter_Make_Const.html >-%%DATADIR%%/docs/METAFUNCTION_Iterator.html >-%%DATADIR%%/docs/METAFUNCTION_Journal_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Key.html >-%%DATADIR%%/docs/METAFUNCTION_L_E_N_G_T_H.html >-%%DATADIR%%/docs/METAFUNCTION_List_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Map_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Max_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Min_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Motif.html >-%%DATADIR%%/docs/METAFUNCTION_Needle.html >-%%DATADIR%%/docs/METAFUNCTION_Pex_Multi_Finder.html >-%%DATADIR%%/docs/METAFUNCTION_Position.html >-%%DATADIR%%/docs/METAFUNCTION_Prefix.html >-%%DATADIR%%/docs/METAFUNCTION_Reference.html >-%%DATADIR%%/docs/METAFUNCTION_Row.html >-%%DATADIR%%/docs/METAFUNCTION_Rows.html >-%%DATADIR%%/docs/METAFUNCTION_S_A_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Scoring_Scheme.html >-%%DATADIR%%/docs/METAFUNCTION_Size.html >-%%DATADIR%%/docs/METAFUNCTION_Source.html >-%%DATADIR%%/docs/METAFUNCTION_Spec.html >-%%DATADIR%%/docs/METAFUNCTION_Std_Container_Iterator.html >-%%DATADIR%%/docs/METAFUNCTION_String_Set_Type.html >-%%DATADIR%%/docs/METAFUNCTION_Suffix.html >-%%DATADIR%%/docs/METAFUNCTION_Value.html >-%%DATADIR%%/docs/METAFUNCTION_Value_Size.html >-%%DATADIR%%/docs/METAFUNCTION_Vertex_Descriptor.html >-%%DATADIR%%/docs/METAFUNCTION_Vertex_Id_Handler.html >-%%DATADIR%%/docs/METAFUNCTION_W_E_I_G_H_T.html >-%%DATADIR%%/docs/METAFUNCTION_Weight.html >-%%DATADIR%%/docs/PAGE.dddoc.html >-%%DATADIR%%/docs/PAGE_Glossary.html >-%%DATADIR%%/docs/SHORTCUT_Blosum30.html >-%%DATADIR%%/docs/SHORTCUT_Blosum45.html >-%%DATADIR%%/docs/SHORTCUT_Blosum62.html >-%%DATADIR%%/docs/SHORTCUT_Blosum80.html >-%%DATADIR%%/docs/SHORTCUT_Char_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Char_String.html >-%%DATADIR%%/docs/SHORTCUT_Dna5_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Dna5_String.html >-%%DATADIR%%/docs/SHORTCUT_Dna5_String_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Dna5_String_Reverse.html >-%%DATADIR%%/docs/SHORTCUT_Dna5_String_Reverse_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Dna_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Dna_String.html >-%%DATADIR%%/docs/SHORTCUT_Dna_String_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Dna_String_Reverse.html >-%%DATADIR%%/docs/SHORTCUT_Dna_String_Reverse_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Edit_Distance_Score.html >-%%DATADIR%%/docs/SHORTCUT_Iupac_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Iupac_String.html >-%%DATADIR%%/docs/SHORTCUT_Mod_Complement_Dna.html >-%%DATADIR%%/docs/SHORTCUT_Mod_Complement_Dna5.html >-%%DATADIR%%/docs/SHORTCUT_Mod_Complement_Rna.html >-%%DATADIR%%/docs/SHORTCUT_Mod_Complement_Rna5.html >-%%DATADIR%%/docs/SHORTCUT_Multi_Fasta.html >-%%DATADIR%%/docs/SHORTCUT_Multi_Seq_File.html >-%%DATADIR%%/docs/SHORTCUT_Myers_Ukkonen.html >-%%DATADIR%%/docs/SHORTCUT_Myers_Ukkonen_Banded.html >-%%DATADIR%%/docs/SHORTCUT_Myers_Ukkonen_Global.html >-%%DATADIR%%/docs/SHORTCUT_Myers_Ukkonen_Global_Banded.html >-%%DATADIR%%/docs/SHORTCUT_Pam120.html >-%%DATADIR%%/docs/SHORTCUT_Pam200.html >-%%DATADIR%%/docs/SHORTCUT_Pam250.html >-%%DATADIR%%/docs/SHORTCUT_Pam40.html >-%%DATADIR%%/docs/SHORTCUT_Peptide.html >-%%DATADIR%%/docs/SHORTCUT_Peptide_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Rna5_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Rna5_String.html >-%%DATADIR%%/docs/SHORTCUT_Rna5_String_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Rna5_String_Reverse.html >-%%DATADIR%%/docs/SHORTCUT_Rna5_String_Reverse_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Rna_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Rna_String.html >-%%DATADIR%%/docs/SHORTCUT_Rna_String_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Rna_String_Reverse.html >-%%DATADIR%%/docs/SHORTCUT_Rna_String_Reverse_Complement.html >-%%DATADIR%%/docs/SHORTCUT_Simple_Score.html >-%%DATADIR%%/docs/SHORTCUT_Unicode_Iterator.html >-%%DATADIR%%/docs/SHORTCUT_Unicode_String.html >-%%DATADIR%%/docs/SHORTCUT_Vtml200.html >-%%DATADIR%%/docs/SPEC_Abndm_Algo.html >-%%DATADIR%%/docs/SPEC_Adaptor+_Iterator.html >-%%DATADIR%%/docs/SPEC_Adjacency+_Iterator.html >-%%DATADIR%%/docs/SPEC_Aho_Corasick.html >-%%DATADIR%%/docs/SPEC_Align_Col_Iterator.html >-%%DATADIR%%/docs/SPEC_Alignment+_Graph.html >-%%DATADIR%%/docs/SPEC_Alloc+_String.html >-%%DATADIR%%/docs/SPEC_Alphabet+_Expansion.html >-%%DATADIR%%/docs/SPEC_Amino_Acid.html >-%%DATADIR%%/docs/SPEC_Anchor_Gaps.html >-%%DATADIR%%/docs/SPEC_Array+_String.html >-%%DATADIR%%/docs/SPEC_Array_Gaps.html >-%%DATADIR%%/docs/SPEC_Async.html >-%%DATADIR%%/docs/SPEC_Automaton.html >-%%DATADIR%%/docs/SPEC_Basic_Info.html >-%%DATADIR%%/docs/SPEC_Bfam.html >-%%DATADIR%%/docs/SPEC_Bfam_3c_Oracle_3e.html >-%%DATADIR%%/docs/SPEC_Bfam_3c_Trie_3e.html >-%%DATADIR%%/docs/SPEC_Bfs+_Iterator.html >-%%DATADIR%%/docs/SPEC_Bit+_Compressed+_Pair.html >-%%DATADIR%%/docs/SPEC_Bit+_Packed+_Tuple.html >-%%DATADIR%%/docs/SPEC_Blast_N.html >-%%DATADIR%%/docs/SPEC_Blast_P.html >-%%DATADIR%%/docs/SPEC_Block+_String.html >-%%DATADIR%%/docs/SPEC_Bndm_Algo.html >-%%DATADIR%%/docs/SPEC_Bottom_Up+_Iterator.html >-%%DATADIR%%/docs/SPEC_C_Mode.html >-%%DATADIR%%/docs/SPEC_C_Style+_String.html >-%%DATADIR%%/docs/SPEC_Caster.html >-%%DATADIR%%/docs/SPEC_Chained.html >-%%DATADIR%%/docs/SPEC_Chained_Seed.html >-%%DATADIR%%/docs/SPEC_Chunk+_Pool+_Allocator.html >-%%DATADIR%%/docs/SPEC_Concat_Direct.html >-%%DATADIR%%/docs/SPEC_Concat_Virtual+_Iterator.html >-%%DATADIR%%/docs/SPEC_Counter.html >-%%DATADIR%%/docs/SPEC_Counting+_Id_Manager.html >-%%DATADIR%%/docs/SPEC_D_P_Search.html >-%%DATADIR%%/docs/SPEC_Dependent.html >-%%DATADIR%%/docs/SPEC_Dfs+_Preorder+_Iterator.html >-%%DATADIR%%/docs/SPEC_Directed+_Graph.html >-%%DATADIR%%/docs/SPEC_Dna.html >-%%DATADIR%%/docs/SPEC_Dna5.html >-%%DATADIR%%/docs/SPEC_Dna5_Q.html >-%%DATADIR%%/docs/SPEC_Dna_Q.html >-%%DATADIR%%/docs/SPEC_E_Pattern_Branching.html >-%%DATADIR%%/docs/SPEC_Echoer.html >-%%DATADIR%%/docs/SPEC_Edge+_Iterator.html >-%%DATADIR%%/docs/SPEC_Edit_Distance.html >-%%DATADIR%%/docs/SPEC_Edit_Environment.html >-%%DATADIR%%/docs/SPEC_Exact_Fragment.html >-%%DATADIR%%/docs/SPEC_Exact_Reversable_Fragment.html >-%%DATADIR%%/docs/SPEC_External+_String.html >-%%DATADIR%%/docs/SPEC_File+_Reader+_String.html >-%%DATADIR%%/docs/SPEC_Filter.html >-%%DATADIR%%/docs/SPEC_Finite.html >-%%DATADIR%%/docs/SPEC_Full_Info.html >-%%DATADIR%%/docs/SPEC_Gapped_Shape.html >-%%DATADIR%%/docs/SPEC_Generic_Shape.html >-%%DATADIR%%/docs/SPEC_Geometric+_Pdf.html >-%%DATADIR%%/docs/SPEC_Hamming_Simple_Finder.html >-%%DATADIR%%/docs/SPEC_Hierarchical.html >-%%DATADIR%%/docs/SPEC_Hit_Iterator.html >-%%DATADIR%%/docs/SPEC_Hmm.html >-%%DATADIR%%/docs/SPEC_Horspool.html >-%%DATADIR%%/docs/SPEC_Hsp_Iterator.html >-%%DATADIR%%/docs/SPEC_Index_Dfi.html >-%%DATADIR%%/docs/SPEC_Index_Esa.html >-%%DATADIR%%/docs/SPEC_Index_Q_Gram.html >-%%DATADIR%%/docs/SPEC_Index_Wotd.html >-%%DATADIR%%/docs/SPEC_Infix_Segment.html >-%%DATADIR%%/docs/SPEC_Interval+_Tree+_Node.html >-%%DATADIR%%/docs/SPEC_Iterator+_Proxy.html >-%%DATADIR%%/docs/SPEC_Iupac.html >-%%DATADIR%%/docs/SPEC_Joiner.html >-%%DATADIR%%/docs/SPEC_Journaled+_String.html >-%%DATADIR%%/docs/SPEC_Log-_Normal+_Pdf.html >-%%DATADIR%%/docs/SPEC_M_Map+_String.html >-%%DATADIR%%/docs/SPEC_Mapper_Config.html >-%%DATADIR%%/docs/SPEC_Mapper_Config_Size.html >-%%DATADIR%%/docs/SPEC_Mapper_Spec.html >-%%DATADIR%%/docs/SPEC_Max_Repeats+_Iterator.html >-%%DATADIR%%/docs/SPEC_Memory_Manager_Index.html >-%%DATADIR%%/docs/SPEC_Memory_Manager_Pointer.html >-%%DATADIR%%/docs/SPEC_Mersenne+_Twister+_Rng.html >-%%DATADIR%%/docs/SPEC_Mod_Reverse.html >-%%DATADIR%%/docs/SPEC_Mod_View.html >-%%DATADIR%%/docs/SPEC_Multi+_Pool+_Allocator.html >-%%DATADIR%%/docs/SPEC_Multi_Bfam.html >-%%DATADIR%%/docs/SPEC_Multi_Bfam_3c_Oracle_3e.html >-%%DATADIR%%/docs/SPEC_Multi_Mems+_Iterator.html >-%%DATADIR%%/docs/SPEC_Multi_Seed.html >-%%DATADIR%%/docs/SPEC_Multiple_Shift_And.html >-%%DATADIR%%/docs/SPEC_Mums+_Iterator.html >-%%DATADIR%%/docs/SPEC_Myers.html >-%%DATADIR%%/docs/SPEC_Namer.html >-%%DATADIR%%/docs/SPEC_Non_Hierarchical.html >-%%DATADIR%%/docs/SPEC_Non_Scored+_Seed_Set.html >-%%DATADIR%%/docs/SPEC_Normal+_Pdf.html >-%%DATADIR%%/docs/SPEC_One_Gapped_Shape.html >-%%DATADIR%%/docs/SPEC_Open_Addressing.html >-%%DATADIR%%/docs/SPEC_Oracle.html >-%%DATADIR%%/docs/SPEC_Out-_Edge+_Iterator.html >-%%DATADIR%%/docs/SPEC_Owner.html >-%%DATADIR%%/docs/SPEC_P_Mode.html >-%%DATADIR%%/docs/SPEC_Packed+_Pair.html >-%%DATADIR%%/docs/SPEC_Packed+_String.html >-%%DATADIR%%/docs/SPEC_Packed+_Triple.html >-%%DATADIR%%/docs/SPEC_Pex.html >-%%DATADIR%%/docs/SPEC_Pizza+_26+_Chili+_Index.html >-%%DATADIR%%/docs/SPEC_Pizza+_26+_Chili+_String.html >-%%DATADIR%%/docs/SPEC_Pms1.html >-%%DATADIR%%/docs/SPEC_Pmsp.html >-%%DATADIR%%/docs/SPEC_Points+_Only+_Tree+_Node.html >-%%DATADIR%%/docs/SPEC_Pool_Config.html >-%%DATADIR%%/docs/SPEC_Pool_Config_Size.html >-%%DATADIR%%/docs/SPEC_Pool_Spec.html >-%%DATADIR%%/docs/SPEC_Position+_Iterator.html >-%%DATADIR%%/docs/SPEC_Prefix_Segment.html >-%%DATADIR%%/docs/SPEC_Priority_Heap.html >-%%DATADIR%%/docs/SPEC_Projection.html >-%%DATADIR%%/docs/SPEC_Rna.html >-%%DATADIR%%/docs/SPEC_Rna5.html >-%%DATADIR%%/docs/SPEC_Rng+_Functor.html >-%%DATADIR%%/docs/SPEC_Sampler.html >-%%DATADIR%%/docs/SPEC_Score+_Chain_So_P.html >-%%DATADIR%%/docs/SPEC_Score+_Manhattan.html >-%%DATADIR%%/docs/SPEC_Score+_Matrix.html >-%%DATADIR%%/docs/SPEC_Score+_Zero.html >-%%DATADIR%%/docs/SPEC_Scored+_Seed_Set.html >-%%DATADIR%%/docs/SPEC_Set_Horspool.html >-%%DATADIR%%/docs/SPEC_Shift_And.html >-%%DATADIR%%/docs/SPEC_Shift_Or.html >-%%DATADIR%%/docs/SPEC_Shifter.html >-%%DATADIR%%/docs/SPEC_Simple+_Allocator.html >-%%DATADIR%%/docs/SPEC_Simple+_Finder.html >-%%DATADIR%%/docs/SPEC_Simple+_Score.html >-%%DATADIR%%/docs/SPEC_Simple_Iterator.html >-%%DATADIR%%/docs/SPEC_Simple_Seed.html >-%%DATADIR%%/docs/SPEC_Simple_Shape.html >-%%DATADIR%%/docs/SPEC_Single+_Pool+_Allocator.html >-%%DATADIR%%/docs/SPEC_Skiplist.html >-%%DATADIR%%/docs/SPEC_Sorter_Config.html >-%%DATADIR%%/docs/SPEC_Sorter_Config_Size.html >-%%DATADIR%%/docs/SPEC_Sorter_Spec.html >-%%DATADIR%%/docs/SPEC_Source.html >-%%DATADIR%%/docs/SPEC_Store_Report.html >-%%DATADIR%%/docs/SPEC_Stream_Report.html >-%%DATADIR%%/docs/SPEC_Striped.html >-%%DATADIR%%/docs/SPEC_Suffix_Segment.html >-%%DATADIR%%/docs/SPEC_Sumlist_Gaps.html >-%%DATADIR%%/docs/SPEC_Super_Max_Repeats+_Iterator.html >-%%DATADIR%%/docs/SPEC_Super_Max_Repeats_Fast+_Iterator.html >-%%DATADIR%%/docs/SPEC_Swift.html >-%%DATADIR%%/docs/SPEC_Swift_Local.html >-%%DATADIR%%/docs/SPEC_Swift_Semi_Global.html >-%%DATADIR%%/docs/SPEC_Sync.html >-%%DATADIR%%/docs/SPEC_Top_Down+_Iterator.html >-%%DATADIR%%/docs/SPEC_Top_Down_History+_Iterator.html >-%%DATADIR%%/docs/SPEC_Trace_Back.html >-%%DATADIR%%/docs/SPEC_Tree.html >-%%DATADIR%%/docs/SPEC_Trie.html >-%%DATADIR%%/docs/SPEC_Tristate+_Holder.html >-%%DATADIR%%/docs/SPEC_Tupler.html >-%%DATADIR%%/docs/SPEC_Undirected+_Graph.html >-%%DATADIR%%/docs/SPEC_Ungapped_Shape.html >-%%DATADIR%%/docs/SPEC_Uniform+_Pdf.html >-%%DATADIR%%/docs/SPEC_V_S_Tree+_Iterator.html >-%%DATADIR%%/docs/SPEC_Vector_Set.html >-%%DATADIR%%/docs/SPEC_Vertex+_Iterator.html >-%%DATADIR%%/docs/SPEC_Wild_Shift_And.html >-%%DATADIR%%/docs/SPEC_Word+_Graph.html >-%%DATADIR%%/docs/SPEC_Wu_Manber.html >-%%DATADIR%%/docs/TAG.sort_Aligned_Read+_Tags.html >-%%DATADIR%%/docs/TAG_Alignment+_Graph+_Combination.html >-%%DATADIR%%/docs/TAG_Alignment+_Graph+_Format.html >-%%DATADIR%%/docs/TAG_Allocator+_Usage.html >-%%DATADIR%%/docs/TAG_Consensus+_Calling.html >-%%DATADIR%%/docs/TAG_Default.html >-%%DATADIR%%/docs/TAG_Distance+_Calculation.html >-%%DATADIR%%/docs/TAG_Dot_Drawing.html >-%%DATADIR%%/docs/TAG_E_S_A+_Index+_Fibres.html >-%%DATADIR%%/docs/TAG_Empty_Edges.html >-%%DATADIR%%/docs/TAG_External_Config.html >-%%DATADIR%%/docs/TAG_External_Config_Large.html >-%%DATADIR%%/docs/TAG_External_Config_Size.html >-%%DATADIR%%/docs/TAG_File+_Format.html >-%%DATADIR%%/docs/TAG_Find_Infix.html >-%%DATADIR%%/docs/TAG_Find_Prefix.html >-%%DATADIR%%/docs/TAG_Global+_Alignment+_Algorithms.html >-%%DATADIR%%/docs/TAG_Graph+_Iterator.html >-%%DATADIR%%/docs/TAG_Hamming_Distance.html >-%%DATADIR%%/docs/TAG_Hide_Empty_Edges.html >-%%DATADIR%%/docs/TAG_Index+_Find+_Algorithm.html >-%%DATADIR%%/docs/TAG_Interval_Tree+_Centers.html >-%%DATADIR%%/docs/TAG_Interval_Tree+_Node+_Types.html >-%%DATADIR%%/docs/TAG_Iterator+_Spec.html >-%%DATADIR%%/docs/TAG_Levenshtein_Distance.html >-%%DATADIR%%/docs/TAG_Local+_Alignment+_Algorithms.html >-%%DATADIR%%/docs/TAG_Logical+_Values.html >-%%DATADIR%%/docs/TAG_Mean_Std_Dev.html >-%%DATADIR%%/docs/TAG_Move+_Switch.html >-%%DATADIR%%/docs/TAG_Mu_Sigma.html >-%%DATADIR%%/docs/TAG_Nothing.html >-%%DATADIR%%/docs/TAG_Omops.html >-%%DATADIR%%/docs/TAG_Oops.html >-%%DATADIR%%/docs/TAG_Overflow+_Strategy.html >-%%DATADIR%%/docs/TAG_Pizza+_26+_Chili+_Index+_Fibres.html >-%%DATADIR%%/docs/TAG_Pizza+_26+_Chili+_Index+_Tags.html >-%%DATADIR%%/docs/TAG_Postorder.html >-%%DATADIR%%/docs/TAG_Postorder_Empty_Edges.html >-%%DATADIR%%/docs/TAG_Prefix+_Order.html >-%%DATADIR%%/docs/TAG_Preorder.html >-%%DATADIR%%/docs/TAG_Preorder_Empty_Edges.html >-%%DATADIR%%/docs/TAG_Q_Gram+_Index+_Fibres.html >-%%DATADIR%%/docs/TAG_Seed+_Adding.html >-%%DATADIR%%/docs/TAG_Seed+_Extension.html >-%%DATADIR%%/docs/TAG_Seed_Set.html >-%%DATADIR%%/docs/TAG_Segment+_Match+_Generation.html >-%%DATADIR%%/docs/TAG_Simple.html >-%%DATADIR%%/docs/TAG_Tag_List.html >-%%DATADIR%%/docs/TAG_Tcm.html >-%%DATADIR%%/docs/TAG_Upgma+_Configurator.html >-%%DATADIR%%/docs/TAG_W_O_T_D+_Index+_Fibres.html >-%%DATADIR%%/docs/TAG_Zoops.html >-%%DATADIR%%/docs/TYPEDEF_Aligned_Read_Store_Element_23_T_Gap_Anchors.html >-%%DATADIR%%/docs/TYPEDEF_Aligned_Read_Store_Element_23_T_Pos.html >-%%DATADIR%%/docs/TYPEDEF_Aligned_Read_Store_Element_23_T_Spec.html >-%%DATADIR%%/docs/TYPEDEF_Contig_Store_Element_23_T_Contig_Seq.html >-%%DATADIR%%/docs/TYPEDEF_Contig_Store_Element_23_T_Gap_Anchors.html >-%%DATADIR%%/docs/TYPEDEF_Contig_Store_Element_23_T_Pos.html >-%%DATADIR%%/docs/TYPEDEF_Contig_Store_Element_23_T_Spec.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Align_Quality_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Tag_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Annotation_Name_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Annotation_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Contig_File_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Contig_Name_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Contig_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Library_Name_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Library_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Name_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Read_Name_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Read_Seq_Store.html >-%%DATADIR%%/docs/TYPEDEF_Fragment_Store_23_T_Read_Store.html >-%%DATADIR%%/docs/alignment.cpp >-%%DATADIR%%/docs/alignmentGraph.png >-%%DATADIR%%/docs/alignment_local.cpp >-%%DATADIR%%/docs/allocator.cpp >-%%DATADIR%%/docs/alphabet.cpp >-%%DATADIR%%/docs/automatonGraph.png >-%%DATADIR%%/docs/blast_report.cpp >-%%DATADIR%%/docs/dddoc.js >-%%DATADIR%%/docs/dddoc_empty.gif >-%%DATADIR%%/docs/dddoc_html.css >-%%DATADIR%%/docs/dddoc_minus.gif >-%%DATADIR%%/docs/dddoc_plus.gif >-%%DATADIR%%/docs/directedGraph.png >-%%DATADIR%%/docs/file_format.cpp >-%%DATADIR%%/docs/find_approx.cpp >-%%DATADIR%%/docs/find_exact.cpp >-%%DATADIR%%/docs/find_motif.cpp >-%%DATADIR%%/docs/find_wild.cpp >-%%DATADIR%%/docs/graph_algo_bfs.cpp >-%%DATADIR%%/docs/graph_algo_dfs.cpp >-%%DATADIR%%/docs/graph_algo_flow_fordfulkerson.cpp >-%%DATADIR%%/docs/graph_algo_his.cpp >-%%DATADIR%%/docs/graph_algo_lcs.cpp >-%%DATADIR%%/docs/graph_algo_lis.cpp >-%%DATADIR%%/docs/graph_algo_path_allpairs.cpp >-%%DATADIR%%/docs/graph_algo_path_bellmanford.cpp >-%%DATADIR%%/docs/graph_algo_path_dag.cpp >-%%DATADIR%%/docs/graph_algo_path_dijkstra.cpp >-%%DATADIR%%/docs/graph_algo_path_floydwarshall.cpp >-%%DATADIR%%/docs/graph_algo_path_transitive.cpp >-%%DATADIR%%/docs/graph_algo_scc.cpp >-%%DATADIR%%/docs/graph_algo_topsort.cpp >-%%DATADIR%%/docs/graph_algo_tree_kruskal.cpp >-%%DATADIR%%/docs/graph_algo_tree_prim.cpp >-%%DATADIR%%/docs/graph_hmm.cpp >-%%DATADIR%%/docs/graph_hmm_silent.cpp >-%%DATADIR%%/docs/index.html >-%%DATADIR%%/docs/index_find.cpp >-%%DATADIR%%/docs/index_find_stringset.cpp >-%%DATADIR%%/docs/index_maxrepeats.cpp >-%%DATADIR%%/docs/index_mummy.cpp >-%%DATADIR%%/docs/index_mums.cpp >-%%DATADIR%%/docs/index_node_predicate.cpp >-%%DATADIR%%/docs/index_sufarray.cpp >-%%DATADIR%%/docs/index_supermaxrepeats.cpp >-%%DATADIR%%/docs/iterator.cpp >-%%DATADIR%%/docs/modifier_modreverse.cpp >-%%DATADIR%%/docs/modifier_modview.cpp >-%%DATADIR%%/docs/modifier_nested.cpp >-%%DATADIR%%/docs/pizzachili.cpp >-%%DATADIR%%/docs/rooted_iterator.cpp >-%%DATADIR%%/docs/searchfile.js >-%%DATADIR%%/docs/seqan_logo.gif >-%%DATADIR%%/docs/seqan_logo_large.png >-%%DATADIR%%/docs/shape_predefined.h >-%%DATADIR%%/docs/treeGraph.png >-%%DATADIR%%/docs/trieGraph.png >-%%DATADIR%%/docs/undirectedGraph.png >-%%DATADIR%%/gapped_params/results_N15_H.dat >-%%DATADIR%%/gapped_params/results_N15_L.dat >-%%DATADIR%%/gapped_params/results_N16_H.dat >-%%DATADIR%%/gapped_params/results_N16_L.dat >-%%DATADIR%%/gapped_params/results_N17_H.dat >-%%DATADIR%%/gapped_params/results_N17_L.dat >-%%DATADIR%%/gapped_params/results_N18_H.dat >-%%DATADIR%%/gapped_params/results_N18_L.dat >-%%DATADIR%%/gapped_params/results_N19_H.dat >-%%DATADIR%%/gapped_params/results_N19_L.dat >-%%DATADIR%%/gapped_params/results_N20_H.dat >-%%DATADIR%%/gapped_params/results_N20_L.dat >-%%DATADIR%%/gapped_params/results_N21_H.dat >-%%DATADIR%%/gapped_params/results_N21_L.dat >-%%DATADIR%%/gapped_params/results_N22_H.dat >-%%DATADIR%%/gapped_params/results_N22_L.dat >-%%DATADIR%%/gapped_params/results_N23_H.dat >-%%DATADIR%%/gapped_params/results_N23_L.dat >-%%DATADIR%%/gapped_params/results_N24_H.dat >-%%DATADIR%%/gapped_params/results_N24_L.dat >-%%DATADIR%%/gapped_params/results_N25_H.dat >-%%DATADIR%%/gapped_params/results_N25_L.dat >-%%DATADIR%%/gapped_params/results_N26_H.dat >-%%DATADIR%%/gapped_params/results_N26_L.dat >-%%DATADIR%%/gapped_params/results_N27_H.dat >-%%DATADIR%%/gapped_params/results_N27_L.dat >-%%DATADIR%%/gapped_params/results_N28_H.dat >-%%DATADIR%%/gapped_params/results_N28_L.dat >-%%DATADIR%%/gapped_params/results_N29_H.dat >-%%DATADIR%%/gapped_params/results_N29_L.dat >-%%DATADIR%%/gapped_params/results_N30_H.dat >-%%DATADIR%%/gapped_params/results_N30_L.dat >-%%DATADIR%%/gapped_params/results_N31_H.dat >-%%DATADIR%%/gapped_params/results_N31_L.dat >-%%DATADIR%%/gapped_params/results_N32_H.dat >-%%DATADIR%%/gapped_params/results_N32_L.dat >-%%DATADIR%%/gapped_params/results_N33_H.dat >-%%DATADIR%%/gapped_params/results_N33_L.dat >-%%DATADIR%%/gapped_params/results_N34_H.dat >-%%DATADIR%%/gapped_params/results_N34_L.dat >-%%DATADIR%%/gapped_params/results_N35_H.dat >-%%DATADIR%%/gapped_params/results_N35_L.dat >-%%DATADIR%%/gapped_params/results_N36_H.dat >-%%DATADIR%%/gapped_params/results_N36_L.dat >-%%DATADIR%%/gapped_params/results_N37_H.dat >-%%DATADIR%%/gapped_params/results_N37_L.dat >-%%DATADIR%%/gapped_params/results_N38_H.dat >-%%DATADIR%%/gapped_params/results_N38_L.dat >-%%DATADIR%%/gapped_params/results_N39_H.dat >-%%DATADIR%%/gapped_params/results_N39_L.dat >-%%DATADIR%%/gapped_params/results_N40_H.dat >-%%DATADIR%%/gapped_params/results_N40_L.dat >-%%DATADIR%%/gapped_params/results_N41_H.dat >-%%DATADIR%%/gapped_params/results_N41_L.dat >-%%DATADIR%%/gapped_params/results_N42_H.dat >-%%DATADIR%%/gapped_params/results_N42_L.dat >-%%DATADIR%%/gapped_params/results_N43_H.dat >-%%DATADIR%%/gapped_params/results_N43_L.dat >-%%DATADIR%%/gapped_params/results_N44_H.dat >-%%DATADIR%%/gapped_params/results_N44_L.dat >-%%DATADIR%%/gapped_params/results_N45_H.dat >-%%DATADIR%%/gapped_params/results_N45_L.dat >-%%DATADIR%%/gapped_params/results_N46_H.dat >-%%DATADIR%%/gapped_params/results_N46_L.dat >-%%DATADIR%%/gapped_params/results_N47_H.dat >-%%DATADIR%%/gapped_params/results_N47_L.dat >-%%DATADIR%%/gapped_params/results_N48_H.dat >-%%DATADIR%%/gapped_params/results_N48_L.dat >-%%DATADIR%%/gapped_params/results_N49_H.dat >-%%DATADIR%%/gapped_params/results_N49_L.dat >-%%DATADIR%%/gapped_params/results_N50_H.dat >-%%DATADIR%%/gapped_params/results_N50_L.dat >-%%DATADIR%%/gapped_params/results_N51_H.dat >-%%DATADIR%%/gapped_params/results_N51_L.dat >-%%DATADIR%%/gapped_params/results_N52_H.dat >-%%DATADIR%%/gapped_params/results_N52_L.dat >-%%DATADIR%%/gapped_params/results_N53_H.dat >-%%DATADIR%%/gapped_params/results_N53_L.dat >-%%DATADIR%%/gapped_params/results_N54_H.dat >-%%DATADIR%%/gapped_params/results_N54_L.dat >-%%DATADIR%%/gapped_params/results_N55_H.dat >-%%DATADIR%%/gapped_params/results_N55_L.dat >-%%DATADIR%%/gapped_params/results_N56_H.dat >-%%DATADIR%%/gapped_params/results_N56_L.dat >-%%DATADIR%%/gapped_params/results_N57_H.dat >-%%DATADIR%%/gapped_params/results_N57_L.dat >-%%DATADIR%%/gapped_params/results_N58_H.dat >-%%DATADIR%%/gapped_params/results_N58_L.dat >-%%DATADIR%%/gapped_params/results_N59_H.dat >-%%DATADIR%%/gapped_params/results_N59_L.dat >-%%DATADIR%%/gapped_params/results_N60_H.dat >-%%DATADIR%%/gapped_params/results_N60_L.dat >-%%DATADIR%%/gapped_params/results_N61_H.dat >-%%DATADIR%%/gapped_params/results_N61_L.dat >-%%DATADIR%%/gapped_params/results_N62_H.dat >-%%DATADIR%%/gapped_params/results_N62_L.dat >-%%DATADIR%%/gapped_params/results_N63_H.dat >-%%DATADIR%%/gapped_params/results_N63_L.dat >-%%DATADIR%%/gapped_params/results_N64_H.dat >-%%DATADIR%%/gapped_params/results_N64_L.dat >-%%DATADIR%%/gapped_params/results_N65_H.dat >-%%DATADIR%%/gapped_params/results_N65_L.dat >-%%DATADIR%%/gapped_params/results_N66_H.dat >-%%DATADIR%%/gapped_params/results_N67_H.dat >-%%DATADIR%%/gapped_params/results_N68_H.dat >-%%DATADIR%%/gapped_params/results_N69_H.dat >-%%DATADIR%%/gapped_params/results_N70_H.dat >-%%DATADIR%%/gapped_params/results_N71_H.dat >-%%DATADIR%%/gapped_params/results_N72_H.dat >-%%DATADIR%%/gapped_params/results_N73_H.dat >-%%DATADIR%%/gapped_params/results_N74_H.dat >-%%DATADIR%%/gapped_params/results_N75_H.dat >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.char+array.html >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.std_3a_3a_F_I_L_E+_2a.html >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.std_3a_3abasic__string.html >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.std_3a_3aiostream.html >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.std_3a_3alist.html >+%%PORTDOCS%%%%DOCSDIR%%/ADAPTION.std_3a_3avector.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Align.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Align_Cols.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Align_Config.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Align_Quality_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Aligned_Read_Layout.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Aligned_Read_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Async_Request.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Auto_Seq_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Blast_Hit.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Blast_Hsp.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Blast_Report.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Bundle2.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Bundle3.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Bundle5.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Command_Line_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Command_Line_Parser.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Concatenator_Many_To_One.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Contig_File.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Contig_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Dequeue.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Edge_Stump.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_External+_Property+_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_File.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_File_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Fragment.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Fragment_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Frequency_Distribution.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Functor_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Functor_Convert.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Functor_Lowcase.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Functor_Upcase.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Gap_Anchor.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Hardwired_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Holder.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Id_Manager.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Internal_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Internal_Pointer_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Internal_Raw_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Interval_And_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Interval_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Interval_Tree_Node.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Iter.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Lexical.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Library_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Local_Alignment_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Markov_Model.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Mate_Pair_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Memory_Manager.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Modified_Alphabet.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Modified_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Modified_String.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Motif_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Name_Store_Cache.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pair.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pattern.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pipe.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Point_And_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pool.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Priority_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Property_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Proxy.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Pseudocount.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Read_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Rng.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Seed_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Simple_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_String.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_String_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Tag_Selector.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_To_Std_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Triple.html >+%%PORTDOCS%%%%DOCSDIR%%/CLASS_Tuple.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Container.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Pattern.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Rooted+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/CONCEPT_Simple+_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_All+_Pairs+_Shortest+_Path.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Allocators.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Alphabets.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Approximate+_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Bellman-_Ford+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Blast+_Reports.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Breadth-_First+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Constraint+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Depth-_First+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Dijkstras+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Exact+_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_File+_Format+_I_2f_O.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Floyd-_Warshall+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Global+_Alignments.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_H_M_M+_Silent+_States.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_H_M_M.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Heaviest+_Increasing+_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Index+_Finder+_String_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Index+_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Iterator+_Basics.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Kruskals+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Local+_Alignments.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Longest+_Common+_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Longest+_Increasing+_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Maximal+_Repeats.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Maximal+_Unique+_Matches.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Maximum+_Flow.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Mod_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Mod_View.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Motif+_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Mummy.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Nested+_Modifiers.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Pizza+_26+_Chili+_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Prims+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Rooted+_Iterators.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Shortest+_Path+in+_D_A_Gs.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_String+_Basics.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Strongly+_Connected+_Components.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Suffix+_Array.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Supermaximal+_Repeats.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Topological+_Sort.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Transitive+_Closure.html >+%%PORTDOCS%%%%DOCSDIR%%/DEMO_Wildcard+_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.abs_Freq_Of_Letters_In_Seq.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.abs_Freq_Of_Letters_In_Set_Of_Seqs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Argument_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Child.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Edge.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Help_Line.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Interval.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Line.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Section.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Seeds.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Title_Line.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Usage_Line.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Version_Line.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.add_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.adjust_Top.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.alignment_Evaluation.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.all_Pairs_Shortest_Path.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.allocate.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Aligned_Read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Diag.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Mate_Pair.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Seqs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.append_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.argument_Count.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.argument_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Clear_Space.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Construct.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Construct_Copy.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Construct_Move.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Copy.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Copy_Backward.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Copy_Forward.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Destruct.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Fill.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Move.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Move_Backward.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.array_Move_Forward.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Begin_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Cropped_Seq_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Emission_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_End_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Next_S.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Next_T.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Property.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Qual.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Qual_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Qualities.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Quality_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Seq.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Seq_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Silent_Status.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_String_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Target.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Transition_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.assign_Value_By_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.async_Read_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.async_Write_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.at_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.at_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.at_End_Of_Sequence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.at_Nil.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Add.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Cas.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Dec.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Inc.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Max.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Min.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Or.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.atomic_Xor.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.back.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.background_Frequency.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.backward_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.banded_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.banded_Chain_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.begin_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.begin_Read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.begin_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.begin_Write.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.bellman_Ford_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.binomial_Coefficient.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.blast_23get_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.breadth_First_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.bundle2.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.bundle3.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.bundle5.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.bwt_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.calculate_Insert_Sizes.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.calculate_Mate_Indices.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.can_Parse_String.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.cancel.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.capacity.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.child_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.child_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.children_Are_Leaves.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clear.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clear_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clear_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clear_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clear_Vertices.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clipped_Begin_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.clipped_End_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.close.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.col.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.collect_Leaves.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.cols.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.compact_Aligned_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.compact_Pair_Match_Ids.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.compare.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.complement.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.complete_Profile.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.compute_Generous_Capacity.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.concat.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.connected_Components.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.container.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Impl.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Matches_To_Global_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Pair_Wise_To_Global_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Pattern_To_Profile.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Residue_To_Frequency_Dist.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.convert_Set_Of_Patterns_To_Profile.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.count_Characters.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.count_Children.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.count_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.count_Occurrences.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.count_Occurrences_Multiple.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.cpu_Time.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_B_W_Table.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Childtab.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Count_Array.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Interval_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Lcp_Table.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Oracle.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Oracle_On_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Q_Gram_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Q_Gram_Index_Dir_Only.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Q_Gram_Index_S_A_Only.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Suffix_Array.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Suffix_Trie.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Trie.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Trie_On_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.create_Wotd_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dag_Shortest_Path.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.database_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.database_Orientation_Plus.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.deallocate.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.degree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dependent.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dependent_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.depth_First_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.detach.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.determine_Consensus_Seq.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.difference.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dijkstra.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dimension.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.dir_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.display.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.display_Result.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.em.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.emission_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.empty.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.empty_Parent_Edge.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.empty_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end_Read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.end_Write.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.erase.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.erase_Back.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.expectation.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.extend_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.extend_Seed_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.extend_Seeds.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.extend_Seeds_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.factorial.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Edge.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Intervals.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Intervals_Exclude_Touching.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Motif.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.find_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.flatten.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.floyd_Warshall_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.flush.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.ford_Fulkerson_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.forward_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.fragment_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.fragment_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.front.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.gap_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.gap_Value_Impl.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.generate_Sequence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Adjacency_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Argument_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Argument_Values.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Begin_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Begin_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Bit_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Database_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Database_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Database_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Distance_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_E_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_E_Value_Cutoff.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Emission_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_End_State.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Fibre.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_First_Covered_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Frequency.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Gapped_Kappa.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Gapped_Lambda.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Get_Extension.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Get_Open.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Id_By_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Id_Lower_Bound.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Id_Upper_Bound.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Kappa.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Kmer_Similarity_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Lambda.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Last_Covered_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Left_Boundary.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Mate_No.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Motif.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Next.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Next_S.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Next_T.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Nil.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Num_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Occurrence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Occurrences.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Occurrences_Bwt.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Option_Value_Long.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Option_Value_Short.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Option_Values_Long.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Option_Values_Short.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Projected_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Property.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Query_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Query_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Query_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Right_Boundary.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Seq_No.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Seq_Offset.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Step_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_String_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Successor.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Swift_Hits.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Target.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Transition_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.get_Value_By_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.global_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.global_Chaining.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.global_Msa_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Down.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Further.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Next.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Nil.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Previous.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Right.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.go_Up.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.guess_File_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.guess_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.guess_Format_From_Filename.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hamming_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.has_Option_Long.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.has_Option_Short.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.has_Prefix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash2.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash2_Next.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash2_Upper.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash_Next.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.hash_Upper.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.haystack.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.heaviest_Increasing_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.help.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.help_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.host.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.host_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.host_Hit.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.host_Report.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.id_Count.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.id_In_Use.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.id_To_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.in_Degree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Bucket_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Bwt.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Childtab.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Counts.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Counts_Dir.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Create.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Dir.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Lcp.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Lcpe.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Raw_S_A.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Raw_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Require.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_S_A.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Supplied.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.index_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.infimum_Value_Impl.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.infix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.infix_With_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.insert.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.insert_Gap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.insert_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.insert_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.integrate_Align.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.inverse_Hash.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Boolean_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Double_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Equal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Gap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Greater.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Greater_Or_Equal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Hidden_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Int_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Label_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Left_Maximal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Less.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Less_Or_Equal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Not_Equal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Option_List.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Option_Mandatory.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Partially_Left_Extensible.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Prefix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Reversed.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Right_Terminal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Set_Long.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Set_Short.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Silent.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_String_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.is_Unique.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.iter.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.key.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.kruskals_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.label.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.layout_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lca.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lcp.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lcp_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lcp_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lcpe_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.left_Boundary.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.left_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.left_Dim0.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.left_Dim1.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.left_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.load_Contig.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.load_Contigs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.load_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.load_Score_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.local_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lock_Contig.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lock_Contigs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.log2.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.logarithmize.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.long_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.longest_Common_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.longest_Increasing_Subsequence.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.lower_Bound_Aligned_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23add.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23erase.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23erase_All.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23find.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23has_Key.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23insert.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_23value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.map_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.match_Refinement.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.max_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.maximum_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.min_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.motif_Count.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.move.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.move_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.move_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.mt_Rand.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.mt_Rand_Double.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.mt_Rand_Init.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.multi_Local_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.needle.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.next_S.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.next_T.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.node_Depth.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.node_Hull_Predicate.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.node_Predicate.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.node_Up.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.normalize.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Children.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Hits.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Hsps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Tree_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.num_Vertices.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.obtain_I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.obtain_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.open.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.open_Temp.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.ord_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.order_Occurrences.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.out_Degree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parent_Edge_First_Char.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parent_Edge_Label.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parent_Edge_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parent_Rep_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parent_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parse.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.parse_String.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pick_Random_Number.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pop.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pos_Globalize.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pos_Local_To_X.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pos_Localize.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.pos_Of_Max.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.position_Range.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.position_Range_No_Clip.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.position_To_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.prefix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.prepend_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.prims_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.print_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.print_Debug_Level.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.progressive_Alignment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.property.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.push.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.quality_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.query_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.query_Orientation_Plus.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.range.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.rawsa_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.rawtext_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.re_Align.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.read_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.read_Feature.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.read_Line_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.read_Meta.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.refresh.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.release_All.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.release_I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.release_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_All_Children.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Child.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Edge.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Gap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_In_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Out_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Value_By_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.remove_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.rep_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.replace.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.representative.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.required_Arguments.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.reserve.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.resize.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.resize_Edge_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.resize_Space.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.resize_Vertex_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.reverse_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.rewind.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.right_Boundary.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.right_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.right_Dim0.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.right_Dim1.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.right_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.row.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.rows.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sa_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Extend.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Extend_Horizontal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Extend_Vertical.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Horizontal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Open.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Open_Horizontal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Open_Vertical.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Gap_Vertical.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Limit.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Match.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Mismatch.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.score_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.scoring_Scheme.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.seed_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.seek.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sequence_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Begin_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Default_Score_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_End_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Eof.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Haystack.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Help_Text.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Host.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Left_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Left_Dim0.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Left_Dim1.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Left_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Long_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Maximum_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Needle.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Option_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Quality_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Right_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Right_Dim0.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Right_Dim1.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Right_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Gap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Gap_Extend.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Gap_Open.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Limit.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Match.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Score_Mismatch.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Scoring_Scheme.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Short_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Step_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Strings.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.set_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.shape_To_String.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.share_Resources.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.short_Help.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.short_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.shrink_To_Fit.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.shuffle.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.silent_Status.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.size.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.slow_Nj_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sort_Aligned_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source_Length.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.source_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.split.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.start_Diagonal.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.string_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.string_Set_Limits.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.string_To_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.strongly_Connected_Components.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.suffix.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sum.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sum_Of_Pairs_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.supremum_Value_Impl.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.swap.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.sys_Time.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.target.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.target_Vertex.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.tell.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.text_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.to_C_String.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.to_Lower.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.to_Source_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.to_Upper.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.to_View_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.topological_Sort.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.transition_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.transitive_Closure.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.transpose.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.triplet_Library_Extension.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.unlock_And_Free_Contig.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.unlock_And_Free_Contigs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.unlock_Contig.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.unlock_Contigs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.upgma_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.upper_Bound_Aligned_Reads.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.value.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.value_By_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.value_Construct.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.value_Construct_Move.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.value_Destruct.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.variance.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.version.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.viterbi_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.wait_For.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.weight.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.window_Find_Begin.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.window_Find_End.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.window_Find_Next.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.write.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.write_At.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.write_Contigs.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION.zscore.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Allocator_23clear.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Automaton_23label.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Blast_23get_Blast_Match_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Fileformat_23read.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Fileformat_23write.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Graph_23assign_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Graph_23is_Leaf.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Graph_23is_Root.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Index_23is_Leaf.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Pipelining_23front.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Priority_Type_23pop.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Priority_Type_23push.html >+%%PORTDOCS%%%%DOCSDIR%%/FUNCTION_Priority_Type_23top.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Adaption.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Class.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Concept.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Demo.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Function.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Metafunction.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Shortcut.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEXPAGE_Tag.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Adaption.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Aggregates.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Alignments.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Basic.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Blast.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Fragment+_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Input_2f_Output.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Markov_Model.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Modifier.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Motif+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Pipelining.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Random.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Seed+_Handling.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Class_Sequences.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Concept.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Basics.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Modifier.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Motif+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Demo_System.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function.sequences.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Alignments.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Alphabets.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Array+_Handling.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Atomic+_Operations.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Blast.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Chaining.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Class._Align.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Class.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Comparisons.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Containers.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Content+_Manipulation.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Dependent+_Objects.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Fragment+_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Input_2f_Output.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Iteration.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Memory.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Misc.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Miscellaneous_3a.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Modifier.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Modifiers.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Motif+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Pipelining.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Random.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Scoring.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Seed+_Handling.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Function_Sequences.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Basic.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Metafunction_Sequences.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Page.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Input_2f_Output.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Iterators.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Modifier.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Pattern+_Matching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Scoring.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Shortcut_Strings.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Aggregates.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Alignments.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Allocators.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Alphabets.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Blast.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Chaining.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Files.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Holders.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Iterators.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Map.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Modifier.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Motif+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Pattern+_Matching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Pipelining.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Proxies.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Random.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Scoring.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Seed+_Handling.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Segments.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Sequences.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Spec_Strings.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Fragment+_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Miscellaneous.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Motif+_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Random.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Scoring.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Searching.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Seed+_Handling.html >+%%PORTDOCS%%%%DOCSDIR%%/INDEX_Tag_Strings.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC.~_Holder.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Adaptor_Iterator_23_Iter.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Align_Quality_Store_Element_23_Align_Quality_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Aligned_Read_Store_Element_23_Aligned_Read_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Bottom_Up+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Chained_Seed_23_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Command_Line_Option_23_Command_Line_Option.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Command_Line_Parser_23_Command_Line_Parser.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Concat_Virtual+_Iterator_23_Iter.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Concatenator_Many_To_One_23_Concatenator_Many_To_One.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Contig_Store_Element_23_Contig_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Ext_String_23_String.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Filter_23_Pipe.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Finder_23_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Fragment_23_Fragment.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Gap_Anchor_23_Gap_Anchor.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Gaps_23_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Generic_Shape_23_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Geometric+_Pdf_23_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Holder.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Infix_Segment_23_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Interval_And_Cargo_23_Interval_And_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Interval_Tree_23_Interval_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Interval_Tree_Node_23_Interval_Tree_Node.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Library_Store_Element_23_Library_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Local_Alignment_Finder_23_Local_Alignment_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Log-_Normal+_Pdf_23_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23_Markov_Model.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23build.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23emitted_Probability.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23read.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23set.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Markov_Model_23write.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Mate_Pair_Store_Element_23_Mate_Pair_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Max_Repeats+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Mersenne+_Twister+_Rng_23_Rng.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Multi_Mems+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Mums+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Namer_23_Pipe.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Normal+_Pdf_23_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_One_Gapped_Shape_23_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Pair_23_Pair.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Pipe_23_Pipe.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Point_And_Cargo_23_Point_And_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Position_Iterator_23_Iter.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Prefix_Segment_23_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Read_Store_Element_23_Read_Store_Element.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Rng+_Functor_23_Rng.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Rng_23operator_28_29.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Score+_Matrix_23_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Score_23_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Seed_Set_23_Seed_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Shape_23_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Simple_Seed_23_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Simple_Shape_23_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Suffix_Segment_23_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Super_Max_Repeats+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Super_Max_Repeats_Fast+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_To_Std_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Top_Down+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Top_Down_History+_Iterator_23_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMFUNC_Triple_23_Triple.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Align_Quality_Store_Element_23errors.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Align_Quality_Store_Element_23pair_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Align_Quality_Store_Element_23score.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Layout_23contig_Rows.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23_I_N_V_A_L_I_D___I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23begin_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23contig_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23end_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23pair_Match_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Aligned_Read_Store_Element_23read_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle2_23in1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle2_23in2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle3_23in1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle3_23in2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle3_23in3.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle5_23in1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle5_23in2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle5_23in3.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle5_23in4.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Bundle5_23in5.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Concat_Direct_23concat.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_File_23file_Name.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_File_23first_Contig_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_File_23format.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23_I_N_V_A_L_I_D___I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23file_Begin_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23file_End_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23file_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23seq.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Contig_Store_Element_23usage.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23align_Quality_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23aligned_Read_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23aligned_Read_Tag_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23annotation_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23annotation_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23contig_File_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23contig_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23contig_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23library_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23library_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23mate_Pair_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23mate_Pair_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23read_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23read_Seq_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Fragment_Store_23read_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Gap_Anchor_23gap_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Gap_Anchor_23seq_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_And_Cargo_23cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_And_Cargo_23i1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_And_Cargo_23i2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_Tree_Node_23center.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_Tree_Node_23list1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Interval_Tree_Node_23list2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Library_Store_Element_23mean.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Library_Store_Element_23std.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Markov_Model_23order.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Markov_Model_23stationary_Distribution.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Markov_Model_23transition.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Mate_Pair_Store_Element_23_I_N_V_A_L_I_D___I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Mate_Pair_Store_Element_23lib_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Mate_Pair_Store_Element_23read_Id[2].html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Name_Store_Cache_23_Name_Store_Cache.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Open_Addressing_23alpha.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Pair_23i1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Pair_23i2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Point_And_Cargo_23cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Point_And_Cargo_23point.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Read_Store_Element_23_I_N_V_A_L_I_D___I_D.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Read_Store_Element_23mate_Pair_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Tag_Selector_23tag_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Triple_23i1.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Triple_23i2.html >+%%PORTDOCS%%%%DOCSDIR%%/MEMVAR_Triple_23i3.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Allows_Fast_Random_Access.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Alphabet.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Bits_Per_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Bytes_Per_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Cargo.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Col.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Cols.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Comparator.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Compare_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Concatenator.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Container.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Convert.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Deepest_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Find_Begin_Pattern_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Get_Iterator_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Index_Creator.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Index_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Index_String_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Iterator_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Overflow_Explicit.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Overflow_Implicit.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Pattern.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Default_Prefix_Order.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Difference.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Edge_Descriptor.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Edge_Id_Handler.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Edge_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Fibre.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Gapped_Value_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Get_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Get_V_S_Tree_Iterator_Traits.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Get_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Haystack.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Hit.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Host.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Hsp.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Id.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Infix.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Insertion_Buffer.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Integral_For_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Is_Contiguous.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Is_Integral.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Is_Sequence.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Is_Simple.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Iter_Complement_Const.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Iter_Make_Const.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Journal_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Key.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_L_E_N_G_T_H.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_List_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Map_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Max_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Min_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Motif.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Needle.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Pex_Multi_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Position.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Prefix.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Reference.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Row.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Rows.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_S_A_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Scoring_Scheme.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Std_Container_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_String_Set_Type.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Suffix.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Value.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Value_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Vertex_Descriptor.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Vertex_Id_Handler.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_W_E_I_G_H_T.html >+%%PORTDOCS%%%%DOCSDIR%%/METAFUNCTION_Weight.html >+%%PORTDOCS%%%%DOCSDIR%%/PAGE.dddoc.html >+%%PORTDOCS%%%%DOCSDIR%%/PAGE_Glossary.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Blosum30.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Blosum45.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Blosum62.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Blosum80.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Char_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Char_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna5_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna5_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna5_String_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna5_String_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna5_String_Reverse_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna_String_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna_String_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Dna_String_Reverse_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Edit_Distance_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Iupac_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Iupac_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Mod_Complement_Dna.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Mod_Complement_Dna5.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Mod_Complement_Rna.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Mod_Complement_Rna5.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Multi_Fasta.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Multi_Seq_File.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Myers_Ukkonen.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Myers_Ukkonen_Banded.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Myers_Ukkonen_Global.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Myers_Ukkonen_Global_Banded.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Pam120.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Pam200.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Pam250.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Pam40.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Peptide.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Peptide_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna5_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna5_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna5_String_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna5_String_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna5_String_Reverse_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna_String_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna_String_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Rna_String_Reverse_Complement.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Simple_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Unicode_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Unicode_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SHORTCUT_Vtml200.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Abndm_Algo.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Adaptor+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Adjacency+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Aho_Corasick.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Align_Col_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Alignment+_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Alloc+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Alphabet+_Expansion.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Amino_Acid.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Anchor_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Array+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Array_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Async.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Automaton.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Basic_Info.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bfam.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bfam_3c_Oracle_3e.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bfam_3c_Trie_3e.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bfs+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bit+_Compressed+_Pair.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bit+_Packed+_Tuple.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Blast_N.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Blast_P.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Block+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bndm_Algo.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Bottom_Up+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_C_Mode.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_C_Style+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Caster.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Chained.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Chained_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Chunk+_Pool+_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Concat_Direct.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Concat_Virtual+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Counter.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Counting+_Id_Manager.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_D_P_Search.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dependent.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dfs+_Preorder+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Directed+_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dna.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dna5.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dna5_Q.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Dna_Q.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_E_Pattern_Branching.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Echoer.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Edge+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Edit_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Edit_Environment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Exact_Fragment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Exact_Reversable_Fragment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_External+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_File+_Reader+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Filter.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Finite.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Full_Info.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Gapped_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Generic_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Geometric+_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Hamming_Simple_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Hierarchical.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Hit_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Hmm.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Horspool.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Hsp_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Index_Dfi.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Index_Esa.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Index_Q_Gram.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Index_Wotd.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Infix_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Interval+_Tree+_Node.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Iterator+_Proxy.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Iupac.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Joiner.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Journaled+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Log-_Normal+_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_M_Map+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mapper_Config.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mapper_Config_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mapper_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Max_Repeats+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Memory_Manager_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Memory_Manager_Pointer.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mersenne+_Twister+_Rng.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mod_Reverse.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mod_View.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multi+_Pool+_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multi_Bfam.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multi_Bfam_3c_Oracle_3e.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multi_Mems+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multi_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Multiple_Shift_And.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Mums+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Myers.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Namer.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Non_Hierarchical.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Non_Scored+_Seed_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Normal+_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_One_Gapped_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Open_Addressing.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Oracle.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Out-_Edge+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Owner.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_P_Mode.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Packed+_Pair.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Packed+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Packed+_Triple.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pex.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pizza+_26+_Chili+_Index.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pizza+_26+_Chili+_String.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pms1.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pmsp.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Points+_Only+_Tree+_Node.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pool_Config.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pool_Config_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Pool_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Position+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Prefix_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Priority_Heap.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Projection.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Rna.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Rna5.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Rng+_Functor.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sampler.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Score+_Chain_So_P.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Score+_Manhattan.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Score+_Matrix.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Score+_Zero.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Scored+_Seed_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Set_Horspool.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Shift_And.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Shift_Or.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Shifter.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple+_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple+_Finder.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple+_Score.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple_Seed.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Simple_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Single+_Pool+_Allocator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Skiplist.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sorter_Config.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sorter_Config_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sorter_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Source.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Store_Report.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Stream_Report.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Striped.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Suffix_Segment.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sumlist_Gaps.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Super_Max_Repeats+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Super_Max_Repeats_Fast+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Swift.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Swift_Local.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Swift_Semi_Global.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Sync.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Top_Down+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Top_Down_History+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Trace_Back.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Tree.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Trie.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Tristate+_Holder.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Tupler.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Undirected+_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Ungapped_Shape.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Uniform+_Pdf.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_V_S_Tree+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Vector_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Vertex+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Wild_Shift_And.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Word+_Graph.html >+%%PORTDOCS%%%%DOCSDIR%%/SPEC_Wu_Manber.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG.sort_Aligned_Read+_Tags.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Alignment+_Graph+_Combination.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Alignment+_Graph+_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Allocator+_Usage.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Consensus+_Calling.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Default.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Distance+_Calculation.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Dot_Drawing.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_E_S_A+_Index+_Fibres.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Empty_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_External_Config.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_External_Config_Large.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_External_Config_Size.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_File+_Format.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Find_Infix.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Find_Prefix.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Global+_Alignment+_Algorithms.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Graph+_Iterator.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Hamming_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Hide_Empty_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Index+_Find+_Algorithm.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Interval_Tree+_Centers.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Interval_Tree+_Node+_Types.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Iterator+_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Levenshtein_Distance.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Local+_Alignment+_Algorithms.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Logical+_Values.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Mean_Std_Dev.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Move+_Switch.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Mu_Sigma.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Nothing.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Omops.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Oops.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Overflow+_Strategy.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Pizza+_26+_Chili+_Index+_Fibres.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Pizza+_26+_Chili+_Index+_Tags.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Postorder.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Postorder_Empty_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Prefix+_Order.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Preorder.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Preorder_Empty_Edges.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Q_Gram+_Index+_Fibres.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Seed+_Adding.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Seed+_Extension.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Seed_Set.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Segment+_Match+_Generation.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Simple.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Tag_List.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Tcm.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Upgma+_Configurator.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_W_O_T_D+_Index+_Fibres.html >+%%PORTDOCS%%%%DOCSDIR%%/TAG_Zoops.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Aligned_Read_Store_Element_23_T_Gap_Anchors.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Aligned_Read_Store_Element_23_T_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Aligned_Read_Store_Element_23_T_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Contig_Store_Element_23_T_Contig_Seq.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Contig_Store_Element_23_T_Gap_Anchors.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Contig_Store_Element_23_T_Pos.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Contig_Store_Element_23_T_Spec.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Align_Quality_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Aligned_Read_Tag_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Annotation_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Annotation_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Contig_File_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Contig_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Contig_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Library_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Library_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Mate_Pair_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Read_Name_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Read_Seq_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/TYPEDEF_Fragment_Store_23_T_Read_Store.html >+%%PORTDOCS%%%%DOCSDIR%%/alignment.cpp >+%%PORTDOCS%%%%DOCSDIR%%/alignmentGraph.png >+%%PORTDOCS%%%%DOCSDIR%%/alignment_local.cpp >+%%PORTDOCS%%%%DOCSDIR%%/allocator.cpp >+%%PORTDOCS%%%%DOCSDIR%%/alphabet.cpp >+%%PORTDOCS%%%%DOCSDIR%%/automatonGraph.png >+%%PORTDOCS%%%%DOCSDIR%%/blast_report.cpp >+%%PORTDOCS%%%%DOCSDIR%%/dddoc.js >+%%PORTDOCS%%%%DOCSDIR%%/dddoc_empty.gif >+%%PORTDOCS%%%%DOCSDIR%%/dddoc_html.css >+%%PORTDOCS%%%%DOCSDIR%%/dddoc_minus.gif >+%%PORTDOCS%%%%DOCSDIR%%/dddoc_plus.gif >+%%PORTDOCS%%%%DOCSDIR%%/directedGraph.png >+%%PORTDOCS%%%%DOCSDIR%%/file_format.cpp >+%%PORTDOCS%%%%DOCSDIR%%/find_approx.cpp >+%%PORTDOCS%%%%DOCSDIR%%/find_exact.cpp >+%%PORTDOCS%%%%DOCSDIR%%/find_motif.cpp >+%%PORTDOCS%%%%DOCSDIR%%/find_wild.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_bfs.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_dfs.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_flow_fordfulkerson.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_his.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_lcs.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_lis.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_allpairs.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_bellmanford.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_dag.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_dijkstra.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_floydwarshall.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_path_transitive.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_scc.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_topsort.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_tree_kruskal.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_algo_tree_prim.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_hmm.cpp >+%%PORTDOCS%%%%DOCSDIR%%/graph_hmm_silent.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index.html >+%%PORTDOCS%%%%DOCSDIR%%/index_find.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_find_stringset.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_maxrepeats.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_mummy.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_mums.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_node_predicate.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_sufarray.cpp >+%%PORTDOCS%%%%DOCSDIR%%/index_supermaxrepeats.cpp >+%%PORTDOCS%%%%DOCSDIR%%/iterator.cpp >+%%PORTDOCS%%%%DOCSDIR%%/modifier_modreverse.cpp >+%%PORTDOCS%%%%DOCSDIR%%/modifier_modview.cpp >+%%PORTDOCS%%%%DOCSDIR%%/modifier_nested.cpp >+%%PORTDOCS%%%%DOCSDIR%%/pizzachili.cpp >+%%PORTDOCS%%%%DOCSDIR%%/rooted_iterator.cpp >+%%PORTDOCS%%%%DOCSDIR%%/searchfile.js >+%%PORTDOCS%%%%DOCSDIR%%/seqan_logo.gif >+%%PORTDOCS%%%%DOCSDIR%%/seqan_logo_large.png >+%%PORTDOCS%%%%DOCSDIR%%/shape_predefined.h >+%%PORTDOCS%%%%DOCSDIR%%/treeGraph.png >+%%PORTDOCS%%%%DOCSDIR%%/trieGraph.png >+%%PORTDOCS%%%%DOCSDIR%%/undirectedGraph.png
<b>You cannot view the attachment while viewing its details because your browser does not support IFRAMEs. <a href="attachment.cgi?id=169674">View the attachment on a separate page</a>.</b>
View Attachment As Diff
View Attachment As Raw
Flags:
h2+fbsdports
:
maintainer-approval+
Actions:
View
|
Diff
Attachments on
bug 204127
:
162571
|
164374
|
165571
|
165572
|
169191
|
169192
|
169193
|
169671
| 169674