Attachment 169872 Details for Bug 209193 – shar patch for new port biology/py-biom-format

shar patch for new port biology/py-biom-format

py-biom-format.shar (text/plain), 2.74 KB, created by Joseph Mingrone on 2016-05-02 02:49:54 UTC

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Creator: Joseph Mingrone

Created: 2016-05-02 02:49:54 UTC

Size: 2.74 KB

patch

obsolete

># This is a shell archive.  Save it in a file, remove anything before
># this line, and then unpack it by entering "sh file".  Note, it may
># create directories; files and directories will be owned by you and
># have default permissions.
>#
># This archive contains:
>#
>#	py-biom-format
>#	py-biom-format/distinfo
>#	py-biom-format/Makefile
>#	py-biom-format/pkg-descr
>#
>echo c - py-biom-format
>mkdir -p py-biom-format > /dev/null 2>&1
>echo x - py-biom-format/distinfo
>sed 's/^X//' >py-biom-format/distinfo << '378cfc3fa2d0914a32a3fe73d881be37'
>XSHA256 (biocore-biom-format-2.1.5_GH0.tar.gz) = e808db612291536e3ca2297c6d72b99154a324fb55fb8898baabc71ceee045d8
>XSIZE (biocore-biom-format-2.1.5_GH0.tar.gz) = 11963101
>378cfc3fa2d0914a32a3fe73d881be37
>echo x - py-biom-format/Makefile
>sed 's/^X//' >py-biom-format/Makefile << 'fcb29d34b754445bcf9042378d00d1bd'
>X# Created by: Joseph Mignrone <jrm@ftfl.ca>
>X# $FreeBSD$
>X
>XPORTNAME=	biom-format
>XPORTVERSION=	2.1.5
>XCATEGORIES=	biology python
>XPKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
>X
>XMAINTAINER=	jrm@ftfl.ca
>XCOMMENT=	Biological Observation Matrix (BIOM) Format Project
>X
>XLICENSE=	BSD3CLAUSE
>X
>XBUILD_DEPENDS=	${PYNUMPY}
>XRUN_DEPENDS=	${PYNUMPY} ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py
>X
>XUSE_GITHUB=	yes
>XGH_ACCOUNT=	biocore
>X
>XUSES=		python
>XUSE_PYTHON=	autoplist distutils
>X
>Xpost-install:
>X	${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/biom/*.so
>X
>X.include <bsd.port.mk>
>fcb29d34b754445bcf9042378d00d1bd
>echo x - py-biom-format/pkg-descr
>sed 's/^X//' >py-biom-format/pkg-descr << '7065d6d1c601022e0e40234d1577da99'
>XThe BIOM file format (canonically pronounced biome) is designed to be a
>Xgeneral-use format for representing biological sample by observation contingency
>Xtables. BIOM is a recognized standard for the Earth Microbiome Project and is a
>XGenomics Standards Consortium supported project.
>X
>XThe BIOM format is designed for general use in broad areas of comparative
>X-omics. For example, in marker-gene surveys, the primary use of this format is
>Xto represent OTU tables: the observations in this case are OTUs and the matrix
>Xcontains counts corresponding to the number of times each OTU is observed in
>Xeach sample. With respect to metagenome data, this format would be used to
>Xrepresent metagenome tables: the observations in this case might correspond to
>XSEED subsystems, and the matrix would contain counts corresponding to the number
>Xof times each subsystem is observed in each metagenome. Similarly, with respect
>Xto genome data, this format may be used to represent a set of genomes: the
>Xobservations in this case again might correspond to SEED subsystems, and the
>Xcounts would correspond to the number of times each subsystem is observed in
>Xeach genome.
>X
>XWWW: http://biom-format.org
>7065d6d1c601022e0e40234d1577da99
>exit
>

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Attachments on bug 209193: 169872 | 170017