Index: biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri
===================================================================
--- biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri	(nonexistent)
+++ biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri	(working copy)
@@ -0,0 +1,11 @@
+--- src/libs_3rdparty/samtools/samtools.pri.orig	2016-03-31 12:21:56 UTC
++++ src/libs_3rdparty/samtools/samtools.pri
+@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = ''
+ 
+ TEMPLATE = lib
+ CONFIG +=thread debug_and_release staticlib warn_off
+-INCLUDEPATH += src src/samtools ../../include /usr/include
++INCLUDEPATH += src src/samtools ../../include
+ win32 : INCLUDEPATH += src/samtools/win32
+ DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE
+ win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca"

Property changes on: biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property
Index: biology/ugene/files/patch-src_plugins__3rdparty_variants_variants.pri
===================================================================
--- biology/ugene/files/patch-src_plugins__3rdparty_variants_variants.pri	(nonexistent)
+++ biology/ugene/files/patch-src_plugins__3rdparty_variants_variants.pri	(working copy)
@@ -0,0 +1,11 @@
+--- src/plugins_3rdparty/variants/variants.pri.orig	2016-03-31 12:22:09 UTC
++++ src/plugins_3rdparty/variants/variants.pri
+@@ -20,7 +20,7 @@ use_bundled_zlib() {
+ win32 : LIBS += -lwsock32
+ 
+ 
+-INCLUDEPATH += src ../../include /usr/include
++INCLUDEPATH += src ../../include
+ INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools 
+ INCLUDEPATH += ../../libs_3rdparty/samtools/src
+ INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools

Property changes on: biology/ugene/files/patch-src_plugins__3rdparty_variants_variants.pri
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property
Index: biology/ugene/files/patch-src_ugene__globals.pri
===================================================================
--- biology/ugene/files/patch-src_ugene__globals.pri	(nonexistent)
+++ biology/ugene/files/patch-src_ugene__globals.pri	(working copy)
@@ -0,0 +1,13 @@
+--- src/ugene_globals.pri.orig	2016-03-31 12:22:21 UTC
++++ src/ugene_globals.pri
+@@ -8,8 +8,8 @@ DEFINES+=UGENE_VER_MAJOR=$${UGENE_VER_MA
+ DEFINES+=UGENE_VER_MINOR=$${UGENE_VER_MINOR}
+ DEFINES+=UGENE_VER_PATCH=$${UGENE_VER_PATCH}
+ 
+-unix : !macx : INCLUDEPATH-=/usr/include
+-unix : !macx : INCLUDEPATH+=/usr/include/qt5 /usr/include
++#unix : !macx : INCLUDEPATH-=/usr/include
++#unix : !macx : INCLUDEPATH+=/usr/include/qt5 /usr/include
+ #unix : !macx : INCLUDEPATH =/usr/include/qt5 $$INCLUDEPATH
+ 
+ # NGS package

Property changes on: biology/ugene/files/patch-src_ugene__globals.pri
___________________________________________________________________
Added: fbsd:nokeywords
## -0,0 +1 ##
+yes
\ No newline at end of property
Added: svn:eol-style
## -0,0 +1 ##
+native
\ No newline at end of property
Added: svn:mime-type
## -0,0 +1 ##
+text/plain
\ No newline at end of property