diff -ruN /usr/ports/math/R/Makefile math/R/Makefile --- /usr/ports/math/R/Makefile 2016-05-22 20:07:03.000000000 +0200 +++ math/R/Makefile 2016-06-24 22:26:35.769494428 +0200 @@ -3,6 +3,7 @@ PORTNAME?= R PORTVERSION= 3.3.0 +PORTREVISION= 1 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/%SUBDIR%/ \ ftp://cran.r-project.org/pub/R/%SUBDIR%/ \ @@ -34,9 +35,30 @@ SED="${LOCALBASE}/bin/gsed" \ ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes -OPTIONS_DEFINE= MISSING DOCS +OPTIONS_DEFINE= MISSING DOCS LTO OPENMP LONGDOUBLE + MISSING_DESC= use libmissing rather than libquadmath +LTO_DESC= Try to produce faster code through LTO +LONGDOUBLE_DESC= Enable use of long double data type +LTO_CONFIGURE_ENABLE= lto +OPENMP_CONFIGURE_ENABLE= openmp +LONGDOUBLE_CONFIGURE_ENABLE= long-double + +OPTIONS_SINGLE= BLAS +OPTIONS_SINGLE_BLAS= RBLAS ATLAS OPENBLAS NETLIB +OPTIONS_DEFAULT= OPENBLAS + +RBLAS_DESC= Use internal blas implementation + +OPENBLAS_USES= blaslapack:openblas +NETLIB_USES= blaslapack:netlib +ATLAS_USES= blaslapack:atlas +RBLAS_CONFIGURE_ON= --without-blas --without-lapack +RBLAS_CONFIGURE_OFF= --with-blas="-L${LOCALBASE}/lib ${BLASLIB}" \ + --with-lapack="${LAPACKLIB}" + +OPTIONS_SUB= RBLAS .if defined(LIBRMATH_SLAVEPORT) BUILD_WRKSRC= ${WRKSRC}/src/nmath/standalone @@ -57,9 +79,8 @@ CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -OPTIONS_DEFINE+= ATLAS ICU PCRE_PORT THREADS +OPTIONS_DEFINE+= ICU PCRE_PORT THREADS -ATLAS_DESC= Use ATLAS instead of BLAS/LAPACK ICU_DESC= Use ICU for collation in multibyte locales PCRE_PORT_DESC= Use devel/pcre instead of the bundled PCRE @@ -85,8 +106,8 @@ TCLTK_DESC= tcltk package X11_DESC= X11() graphics device -OPTIONS_DEFAULT+= GHOSTSCRIPT INFO_MANUALS JPEG LIBR PANGOCAIRO PNG \ - TCLTK TIFF X11 +OPTIONS_DEFAULT+= GHOSTSCRIPT INFO_MANUALS JPEG LTO OPENMP \ + PANGOCAIRO PNG TCLTK TIFF X11 OPTIONS_DEFAULT_armv6+= MISSING OPTIONS_DEFAULT_powerpc+= MISSING @@ -144,20 +165,6 @@ .endif .if !defined(LIBRMATH_SLAVEPORT) -.if ${PORT_OPTIONS:MATLAS} -LIB_DEPENDS+= libatlas.so:math/atlas -BLAS?= ${LIBM} -lf77blas -LAPACK?= ${LIBM} -lalapack -lcblas -.else -BLAS?= no -LAPACK?= no -.endif -CONFIGURE_ARGS+= --with-blas="${BLAS}" --with-lapack="${LAPACK}" -.if ${BLAS} == "no" || ${LAPACK} == "no" -PLIST_SUB+= LAPACK="" -.else -PLIST_SUB+= LAPACK="@comment " -.endif .if ${PORT_OPTIONS:MICU} LIB_DEPENDS+= libicui18n.so:devel/icu @@ -218,7 +225,7 @@ .if ${PORT_OPTIONS:MPANGOCAIRO} USES+= pkgconfig -USE_GNOME+= pango +USE_GNOME+= pango cairo PLIST_SUB+= PANGOCAIRO="" .else CONFIGURE_ARGS+= --without-cairo @@ -252,7 +259,7 @@ .if ${PORT_OPTIONS:MX11} CONFIGURE_ARGS+= --with-x -USE_XORG= x11 xmu xt +USE_XORG= ice sm x11 xext xmu xscrnsaver xt PLIST_SUB+= X11="" .else CONFIGURE_ARGS+= --without-x @@ -290,7 +297,12 @@ .if !${PORT_OPTIONS:MMISSING} .if ${OSVERSION} < 1000016 @${REINPLACE_CMD} -e 's/# define EXP expl/# define EXP(x) (long double)expq((__float128)(x))/' \ - ${WRKSRC}/src/nmath/pnchisq.c + ${WRKSRC}/src/nmath/pnchisq.c\ + ${WRKSRC}/src/nmath/pgamma.c + @${REINPLACE_CMD} -e 's/# define LOG logl/# define LOG(x) (long double)logq((__float128)(x))/' \ + ${WRKSRC}/src/nmath/pnchisq.c\ + ${WRKSRC}/src/nmath/pgamma.c + .endif .if ${OSVERSION} < 1000034 @${REINPLACE_CMD} -Ee 's/(log)(1p)?l\(/(long double)\1\2q((__float128)/' \ @@ -369,8 +381,9 @@ post-install: .for L in R Rblas Rlapack - @(cd ${STAGEDIR}${PREFIX}/lib/R/lib; if [ -f lib${L}.so ] ; then \ - ${LN} -sf lib${L}.so lib${L}.so.${${L:tu}_SOVERSION} ; fi) + @if [ -d ${STAGEDIR}${PREFIX}/lib/R/lib ] ; then \ + cd ${STAGEDIR}${PREFIX}/lib/R/lib; if [ -f lib${L}.so ] ; then \ + ${LN} -sf lib${L}.so lib${L}.so.${${L:tu}_SOVERSION} ; fi; fi .endfor .if ${PORT_OPTIONS:MINFO_MANUALS} && ${PORT_OPTIONS:MDOCS} @(cd ${WRKSRC}/doc/manual; \ diff -ruN /usr/ports/math/R/pkg-plist math/R/pkg-plist --- /usr/ports/math/R/pkg-plist 2016-05-22 20:07:03.000000000 +0200 +++ math/R/pkg-plist 2016-05-29 01:05:30.086105870 +0200 @@ -99,10 +99,10 @@ lib/R/include/Rmath.h lib/R/include/Rversion.h lib/R/include/S.h -%%LAPACK%%lib/R/lib/libRblas.so -%%LAPACK%%lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%% -%%LAPACK%%lib/R/lib/libRlapack.so -%%LAPACK%%lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%% +%%RBLAS%%lib/R/lib/libRblas.so +%%RBLAS%%lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%% +%%RBLAS%%lib/R/lib/libRlapack.so +%%RBLAS%%lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%% %%LIBR%%lib/R/lib/libR.so %%LIBR%%lib/R/lib/libR.so.%%R_SOVERSION%% lib/R/library/KernSmooth/DESCRIPTION