Attachment 173352 Details for Bug 211621 – patch

[patch] patch

cog.diff (text/plain), 1.58 KB, created by Kurt Jaeger on 2016-08-06 09:53:41 UTC

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Creator: Kurt Jaeger

Created: 2016-08-06 09:53:41 UTC

Size: 1.58 KB

patch

obsolete

>diff -r -u -N biology/pycogent/Makefile ../../home/pi/myp/biology/pycogent/Makefile
>--- biology/pycogent/Makefile	2016-04-01 17:16:02.967698000 +0200
>+++ ../../home/pi/myp/biology/pycogent/Makefile	2016-08-06 11:51:14.093338000 +0200
>@@ -2,12 +2,8 @@
> # $FreeBSD: head/biology/pycogent/Makefile 412344 2016-04-01 13:29:15Z mat $
> 
> PORTNAME=	pycogent
>-PORTVERSION=	1.5.3
>-PORTREVISION=	3
>+PORTVERSION=	1.9
> CATEGORIES=	biology python
>-MASTER_SITES=	SF/${PORTNAME}/PyCogent/${PORTVERSION}
>-DISTNAME=	PyCogent-${PORTVERSION}
>-EXTRACT_SUFX=	.tgz
> 
> MAINTAINER=	wen@FreeBSD.org
> COMMENT=	Toolkit for statistical analysis of biological sequences
>@@ -17,10 +13,11 @@
> BUILD_DEPENDS=	${PYNUMPY} \
> 		${LOCALBASE}/bin/cython:lang/cython \
> 		${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \
>-		${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:databases/py-sqlalchemy06
>+		${PYTHON_PKGNAMEPREFIX}sqlalchemy10>=1.0.13:databases/py-sqlalchemy10
> RUN_DEPENDS:=	${BUILD_DEPENDS}
> 
> USES=		python
>+USE_GITHUB=	yes
> USE_PYTHON=	distutils autoplist
> 
> .include <bsd.port.mk>
>diff -r -u -N biology/pycogent/distinfo ../../home/pi/myp/biology/pycogent/distinfo
>--- biology/pycogent/distinfo	2015-08-01 00:42:08.420043000 +0200
>+++ ../../home/pi/myp/biology/pycogent/distinfo	2016-08-06 11:51:01.973791000 +0200
>@@ -1,2 +1,3 @@
>-SHA256 (PyCogent-1.5.3.tgz) = ad883cf4f8bbedd797b934a6ba75a20df2313736e84bff3d5a0e54ac41ea425c
>-SIZE (PyCogent-1.5.3.tgz) = 3360039
>+TIMESTAMP = 1470477061
>+SHA256 (pycogent-pycogent-1.9_GH0.tar.gz) = c9f56d21d764aa62e3e8a9df5a300eb7fb59e502572bec41894d21df19aeceb5
>+SIZE (pycogent-pycogent-1.9_GH0.tar.gz) = 3744597

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