diff -r -u -N biology/pycogent/Makefile ../../home/pi/myp/biology/pycogent/Makefile
--- biology/pycogent/Makefile	2016-04-01 17:16:02.967698000 +0200
+++ ../../home/pi/myp/biology/pycogent/Makefile	2016-08-06 11:51:14.093338000 +0200
@@ -2,12 +2,8 @@
 # $FreeBSD: head/biology/pycogent/Makefile 412344 2016-04-01 13:29:15Z mat $
 
 PORTNAME=	pycogent
-PORTVERSION=	1.5.3
-PORTREVISION=	3
+PORTVERSION=	1.9
 CATEGORIES=	biology python
-MASTER_SITES=	SF/${PORTNAME}/PyCogent/${PORTVERSION}
-DISTNAME=	PyCogent-${PORTVERSION}
-EXTRACT_SUFX=	.tgz
 
 MAINTAINER=	wen@FreeBSD.org
 COMMENT=	Toolkit for statistical analysis of biological sequences
@@ -17,10 +13,11 @@
 BUILD_DEPENDS=	${PYNUMPY} \
 		${LOCALBASE}/bin/cython:lang/cython \
 		${LOCALBASE}/bin/sphinx-build:textproc/py-sphinx \
-		${PYTHON_PKGNAMEPREFIX}sqlalchemy06>=0.5:databases/py-sqlalchemy06
+		${PYTHON_PKGNAMEPREFIX}sqlalchemy10>=1.0.13:databases/py-sqlalchemy10
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 
 USES=		python
+USE_GITHUB=	yes
 USE_PYTHON=	distutils autoplist
 
 .include <bsd.port.mk>
diff -r -u -N biology/pycogent/distinfo ../../home/pi/myp/biology/pycogent/distinfo
--- biology/pycogent/distinfo	2015-08-01 00:42:08.420043000 +0200
+++ ../../home/pi/myp/biology/pycogent/distinfo	2016-08-06 11:51:01.973791000 +0200
@@ -1,2 +1,3 @@
-SHA256 (PyCogent-1.5.3.tgz) = ad883cf4f8bbedd797b934a6ba75a20df2313736e84bff3d5a0e54ac41ea425c
-SIZE (PyCogent-1.5.3.tgz) = 3360039
+TIMESTAMP = 1470477061
+SHA256 (pycogent-pycogent-1.9_GH0.tar.gz) = c9f56d21d764aa62e3e8a9df5a300eb7fb59e502572bec41894d21df19aeceb5
+SIZE (pycogent-pycogent-1.9_GH0.tar.gz) = 3744597
diff -r -u -N biology/pycogent/pkg-descr ../../home/pi/myp/biology/pycogent/pkg-descr
--- biology/pycogent/pkg-descr	2015-08-01 00:42:08.420693000 +0200
+++ ../../home/pi/myp/biology/pycogent/pkg-descr	2016-08-06 11:55:36.621857000 +0200
@@ -1,9 +1,10 @@
-PyCogent is a software library for genomic biology. It is a fully integrated
-and thoroughly tested framework for: controlling third-party applications;
-devising workflows; querying databases; conducting novel probabilistic
-analyses of biological sequence evolution; and generating publication quality
-graphics. It is distinguished by many unique built-in capabilities (such as
-true codon alignment) and the frequent addition of entirely new methods for
-the analysis of genomic data.
+PyCogent is a software library for genomic biology. It is a fully
+integrated and thoroughly tested framework for: controlling third-party
+applications; devising workflows; querying databases; conducting
+novel probabilistic analyses of biological sequence evolution; and
+generating publication quality graphics. It is distinguished by
+many unique built-in capabilities (such as true codon alignment)
+and the frequent addition of entirely new methods for the analysis
+of genomic data.
 
-WWW: http://pycogent.sourceforge.net/
+WWW: http://pycogent.org/