# This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # biology/py-bx-python # biology/py-bx-python/pkg-descr # biology/py-bx-python/distinfo # biology/py-bx-python/Makefile # echo c - biology/py-bx-python mkdir -p biology/py-bx-python > /dev/null 2>&1 echo x - biology/py-bx-python/pkg-descr sed 's/^X//' >biology/py-bx-python/pkg-descr << '7ab3153586db3fd982dcae8d8b7e5d82' Xbx-python is a python library and associated set of scripts to allow for rapid Ximplementation of genome scale analyses. The library contains a variety of Xuseful modules, but the particular strengths are: X XClasses for reading and working with genome-scale multiple local alignments X(in MAF, AXT, and LAV formats). Generic data structure for indexing on disk Xfiles that contain blocks of data associated with intervals on various Xsequences (used, for example, to provide random access to individual Xalignments in huge files; optomized for use over network filesystems). XData structures for working with intervals on sequences: X * "Binned bitsets" which act just like chromosome sized bit arrays, X but lazily allocate regions and allow large blocks of all set or X all unset bits to be stored compactly X * "Intersecter" for performing fast intersection tests that preserve X both query and target intervals and associated annotation X XWWW: https://pypi.python.org/pypi/pysam 7ab3153586db3fd982dcae8d8b7e5d82 echo x - biology/py-bx-python/distinfo sed 's/^X//' >biology/py-bx-python/distinfo << '581ddd13ba9d97cff9666271fd6774f1' XTIMESTAMP = 1492586227 XSHA256 (bxlab-bx-python-v0.7.4_GH0.tar.gz) = 1066d1e56d062d0661f23c19942eb757bd7ab7cb8bc7d89a72fdc3931c995cb4 XSIZE (bxlab-bx-python-v0.7.4_GH0.tar.gz) = 2277893 581ddd13ba9d97cff9666271fd6774f1 echo x - biology/py-bx-python/Makefile sed 's/^X//' >biology/py-bx-python/Makefile << '8bc8270c1e3be956e3b2c5b170c396fa' X# Created by: Yuri Victorovich X# $FreeBSD$ X XPORTNAME= bx-python XPORTVERSION= 0.7.4 XDISTVERSIONPREFIX= v XCATEGORIES= biology python XPKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} X XMAINTAINER= yuri@rawbw.com XCOMMENT= Python module for reading, manipulating and writing genomic data sets X XLICENSE= MIT XLICENSE_FILE= ${WRKSRC}/LICENSE X XBUILD_DEPENDS= ${PYNUMPY} \ X ${PYTHON_PKGNAMEPREFIX}python-lzo>0:archivers/py-python-lzo XRUN_DEPENDS:= ${BUILD_DEPENDS} X XUSE_GITHUB= yes XGH_ACCOUNT= bxlab X XUSES= compiler python XUSE_PYTHON= autoplist distutils X X.include 8bc8270c1e3be956e3b2c5b170c396fa exit