Attachment #182834 for bug #218976




	fi
}

no_arch() {
	[ -z "$NO_ARCH" ] && return
	while read f; do
		[ -z "$f" ] && continue
		err "'${f#${STAGEDIR}${PREFIX}/}' is a architecture specific binary file and you have NO_ARCH=$NO_ARCH set"
	done <<-EOF
	$(find ${STAGEDIR} -type f \
		| xargs file -N \
		| grep -E ': ELF .* [LM]SB .*, .*, version [0-9]+ \(FreeBSD\)' \
		| cut -f 1 -d :)
	EOF
}


checks="shebang symlinks paths stripped desktopfileutils sharedmimeinfo"
checks="$checks suidfiles libtool libperl prefixvar baselibs terminfo"
checks="$checks proxydeps sonames perlcore no_arch"

ret=0
cd ${STAGEDIR}

Lines 71-76 cran-strip: Link Here

(-)b/Mk/Uses/cran.mk (+2 lines)
71	${FIND} ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -name '*.so' -exec ${STRIP_CMD} {} +	71	${FIND} ${STAGEDIR}${PREFIX}/${R_MOD_DIR} -name '*.so' -exec ${STRIP_CMD} {} +
72	.include "${PORTSDIR}/math/R/compiler.mk"	72	.include "${PORTSDIR}/math/R/compiler.mk"
73	.include "${USESDIR}/fortran.mk"	73	.include "${USESDIR}/fortran.mk"
		74	.else
		75	NO_ARCH= yes
74	.endif	76	.endif
75		77
76	.endif #_INCLUDE_USES_CRAN_MK	78	.endif #_INCLUDE_USES_CRAN_MK

Lines 1527-1533 QA_ENV+= STAGEDIR=${STAGEDIR} \ Link Here

(-)b/Mk/bsd.port.mk (-1 / +2 lines)
1527	PKGORIGIN=${PKGORIGIN} \	1527	PKGORIGIN=${PKGORIGIN} \
1528	LIB_RUN_DEPENDS='${_LIB_RUN_DEPENDS:C,[^:]:([^:]):?.*,\1,}' \	1528	LIB_RUN_DEPENDS='${_LIB_RUN_DEPENDS:C,[^:]:([^:]):?.*,\1,}' \
1529	UNIFIED_DEPENDS=${_UNIFIED_DEPENDS:C,([^:]:[^:]):?.*,\1,:O:u:Q} \	1529	UNIFIED_DEPENDS=${_UNIFIED_DEPENDS:C,([^:]:[^:]):?.*,\1,:O:u:Q} \
1530	PKGBASE=${PKGBASE}	1530	PKGBASE=${PKGBASE} \
		1531	NO_ARCH=${NO_ARCH}
1531	.if !empty(USES:Mssl)	1532	.if !empty(USES:Mssl)
1532	QA_ENV+= USESSSL=yes	1533	QA_ENV+= USESSSL=yes
1533	.endif	1534	.endif

Lines 2-7 Link Here

(-)b/converters/R-cran-RJSONIO/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= RJSONIO	4	PORTNAME= RJSONIO
		5	PORTREVISION= 1
5	DISTVERSION= 1.3-0	6	DISTVERSION= 1.3-0
6	CATEGORIES= converters	7	CATEGORIES= converters
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Serialize R objects to JSON, JavaScript Object Notation Link Here
11		12
12	LICENSE= BSD3CLAUSE	13	LICENSE= BSD3CLAUSE
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/converters/R-cran-rjson/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= rjson	4	PORTNAME= rjson
5	PORTVERSION= 0.2.15	5	PORTVERSION= 0.2.15
		6	PORTREVISION= 1
6	CATEGORIES= converters	7	CATEGORIES= converters
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 11-16 COMMENT= JSON for R Link Here
11		12
12	LICENSE= GPLv2	13	LICENSE= GPLv2
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/databases/R-cran-RSQLite.extfuns/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= RSQLite.extfuns	4	PORTNAME= RSQLite.extfuns
5	PORTVERSION= 0.0.1	5	PORTVERSION= 0.0.1
6	PORTREVISION= 7	6	PORTREVISION= 8
7	CATEGORIES= databases	7	CATEGORIES= databases
8	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
9		9
Lines 15-20 LICENSE= APACHE20 Link Here
15	BUILD_DEPENDS= R-cran-RSQLite>=0.11.1:databases/R-cran-RSQLite	15	BUILD_DEPENDS= R-cran-RSQLite>=0.11.1:databases/R-cran-RSQLite
16	RUN_DEPENDS:= ${BUILD_DEPENDS}	16	RUN_DEPENDS:= ${BUILD_DEPENDS}
17		17
18	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
19		19
20	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/databases/R-cran-RSQLite/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= RSQLite	4	PORTNAME= RSQLite
5	PORTVERSION= 1.0.0	5	PORTVERSION= 1.0.0
		6	PORTREVISION= 1
6	CATEGORIES= databases	7	CATEGORIES= databases
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 14-19 LICENSE= LGPL20 Link Here
14	BUILD_DEPENDS= R-cran-DBI>=0.2.5:databases/R-cran-DBI	15	BUILD_DEPENDS= R-cran-DBI>=0.2.5:databases/R-cran-DBI
15	RUN_DEPENDS= R-cran-DBI>=0.2.5:databases/R-cran-DBI	16	RUN_DEPENDS= R-cran-DBI>=0.2.5:databases/R-cran-DBI
16		17
17	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
18		19
19	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 2-8 Link Here

(-)b/devel/R-cran-Hmisc/Makefile (-2 / +2 lines)
2		2
3	PORTNAME= Hmisc	3	PORTNAME= Hmisc
4	DISTVERSION= 3.10-1	4	DISTVERSION= 3.10-1
5	PORTREVISION= 7	5	PORTREVISION= 8
6	CATEGORIES= devel	6	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	7	DISTNAME= ${PORTNAME}_${DISTVERSION}
8		8
Lines 11-16 COMMENT= Harrell Miscellaneous functions useful for data analysis Link Here
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USES= cran:auto-plist	14	USES= cran:auto-plist,compiles
15		15
16	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/devel/R-cran-bit/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= bit	4	PORTNAME= bit
		5	PORTREVISION= 1
5	DISTVERSION= 1.1-12	6	DISTVERSION= 1.1-12
6	CATEGORIES= devel	7	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Class for vectors of 1-bit booleans Link Here
11		12
12	LICENSE= GPLv2	13	LICENSE= GPLv2
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/devel/R-cran-bitops/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= bitops	4	PORTNAME= bitops
5	DISTVERSION= 1.0-6	5	DISTVERSION= 1.0-6
6	PORTREVISION= 4	6	PORTREVISION= 5
7	CATEGORIES= devel	7	CATEGORIES= devel
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 13-18 COMMENT= Functions for Bitwise operations Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/devel/R-cran-caTools/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= caTools	4	PORTNAME= caTools
5	PORTVERSION= 1.17.1	5	PORTVERSION= 1.17.1
		6	PORTREVISION= 1
6	CATEGORIES= devel	7	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 13-18 LICENSE= GPLv3 Link Here
13		14
14	RUN_DEPENDS= R-cran-bitops>0:devel/R-cran-bitops	15	RUN_DEPENDS= R-cran-bitops>0:devel/R-cran-bitops
15		16
16	USES= cran:auto-plist	17	USES= cran:auto-plist,compiles
17		18
18	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/devel/R-cran-chron/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= chron	4	PORTNAME= chron
5	DISTVERSION= 2.3-43	5	DISTVERSION= 2.3-43
6	PORTREVISION= 7	6	PORTREVISION= 8
7	CATEGORIES= devel	7	CATEGORIES= devel
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 12-17 COMMENT= R package for creating objects which can handle dates and times Link Here
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
16		16
17	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 2-8 Link Here

(-)b/devel/R-cran-gbm/Makefile (-2 / +2 lines)
2		2
3	PORTNAME= gbm	3	PORTNAME= gbm
4	DISTVERSION= 2.0-8	4	DISTVERSION= 2.0-8
5	PORTREVISION= 6	5	PORTREVISION= 7
6	CATEGORIES= devel	6	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	7	DISTNAME= ${PORTNAME}_${DISTVERSION}
8		8
Lines 11-16 COMMENT= Extensions to AdaBoost algorithm Link Here
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USES= cran:auto-plist	14	USES= cran:auto-plist,compiles
15		15
16	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 2-8 Link Here

(-)b/devel/R-cran-glmnet/Makefile (-2 / +2 lines)
2		2
3	PORTNAME= glmnet	3	PORTNAME= glmnet
4	DISTVERSION= 1.8-5	4	DISTVERSION= 1.8-5
5	PORTREVISION= 6	5	PORTREVISION= 7
6	CATEGORIES= devel	6	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	7	DISTNAME= ${PORTNAME}_${DISTVERSION}
8		8
Lines 11-16 COMMENT= Lasso and elastic-net regularized generalized linear models Link Here
11		11
12	LICENSE= GPLv2	12	LICENSE= GPLv2
13		13
14	USES= cran:auto-plist	14	USES= cran:auto-plist,compiles
15		15
16	.include <bsd.port.mk>	16	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/devel/R-cran-gtools/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= gtools	4	PORTNAME= gtools
5	PORTVERSION= 3.5.0	5	PORTVERSION= 3.5.0
		6	PORTREVISION= 1
6	CATEGORIES= devel	7	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 11-16 COMMENT= Various R programming tools Link Here
11		12
12	LICENSE= GPLv2	13	LICENSE= GPLv2
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/devel/R-cran-microbenchmark/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= microbenchmark	4	PORTNAME= microbenchmark
		5	PORTREVISION= 1
5	DISTVERSION= 1.4-2	6	DISTVERSION= 1.4-2
6	CATEGORIES= devel	7	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 13-18 LICENSE= BSD3CLAUSE Link Here
13		14
14	RUN_DEPENDS= R-cran-ggplot2>0:graphics/R-cran-ggplot2	15	RUN_DEPENDS= R-cran-ggplot2>0:graphics/R-cran-ggplot2
15		16
16	USES= cran:auto-plist	17	USES= cran:auto-plist,compiles
17		18
18	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/devel/R-cran-plyr/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= plyr	4	PORTNAME= plyr
5	PORTVERSION= 1.8.4	5	PORTVERSION= 1.8.4
		6	PORTREVISION= 1
6	CATEGORIES= devel	7	CATEGORIES= devel
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
8		9
Lines 17-23 LICENSE_PERMS_HW= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept Link Here
17		18
18	RUN_DEPENDS= R-cran-Rcpp>=0.11.0:devel/R-cran-Rcpp	19	RUN_DEPENDS= R-cran-Rcpp>=0.11.0:devel/R-cran-Rcpp
19		20
20	USES= cran:auto-plist	21	USES= cran:auto-plist,compiles
21		22
22	post-install:	23	post-install:
23	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/R/library/plyr/libs/plyr.so	24	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/R/library/plyr/libs/plyr.so

Lines 3-8 Link Here

(-)b/finance/R-cran-PerformanceAnalytics/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= PerformanceAnalytics	4	PORTNAME= PerformanceAnalytics
5	PORTVERSION= 1.4.3541	5	PORTVERSION= 1.4.3541
		6	PORTREVISION= 1
6	CATEGORIES= finance	7	CATEGORIES= finance
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 15-20 LICENSE_COMB= dual Link Here
15	RUN_DEPENDS= R-cran-zoo>0:math/R-cran-zoo \	16	RUN_DEPENDS= R-cran-zoo>0:math/R-cran-zoo \
16	R-cran-xts>=0.9:math/R-cran-xts	17	R-cran-xts>=0.9:math/R-cran-xts
17		18
18	USES= cran:auto-plist	19	USES= cran:auto-plist,compiles
19		20
20	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/finance/R-cran-TTR/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= TTR	4	PORTNAME= TTR
		5	PORTREVISION= 1
5	DISTVERSION= 0.23-1	6	DISTVERSION= 0.23-1
6	CATEGORIES= finance	7	CATEGORIES= finance
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 13-18 LICENSE= GPLv2 Link Here
13		14
14	RUN_DEPENDS= R-cran-xts>=0.9.3:math/R-cran-xts	15	RUN_DEPENDS= R-cran-xts>=0.9.3:math/R-cran-xts
15		16
16	USES= cran:auto-plist	17	USES= cran:auto-plist,compiles
17		18
18	.include <bsd.port.mk>	19	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/finance/R-cran-ccgarch/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= ccgarch	4	PORTNAME= ccgarch
5	DISTVERSION= 0.2.3	5	DISTVERSION= 0.2.3
6	PORTREVISION= 1	6	PORTREVISION= 2
7	CATEGORIES= finance	7	CATEGORIES= finance
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 13-18 COMMENT= Conditional Correlation GARCH models Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/finance/R-cran-fBasics/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= fBasics	4	PORTNAME= fBasics
5	PORTVERSION= 3011.87	5	PORTVERSION= 3011.87
		6	PORTREVISION= 1
6	CATEGORIES= finance	7	CATEGORIES= finance
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 17-22 RUN_DEPENDS= R-cran-timeDate>0:finance/R-cran-timeDate \ Link Here
17	R-cran-stabledist>0:math/R-cran-stabledist \	18	R-cran-stabledist>0:math/R-cran-stabledist \
18	R-cran-gss>0:math/R-cran-gss	19	R-cran-gss>0:math/R-cran-gss
19		20
20	USES= cran:auto-plist	21	USES= cran:auto-plist,compiles
21		22
22	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/finance/R-cran-lmtest/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= lmtest	4	PORTNAME= lmtest
		5	PORTREVISION= 1
5	DISTVERSION= 0.9-35	6	DISTVERSION= 0.9-35
6	CATEGORIES= finance	7	CATEGORIES= finance
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 15-20 RUN_DEPENDS= R-cran-zoo>=0:math/R-cran-zoo \ Link Here
15	R-cran-strucchange>0:finance/R-cran-strucchange \	16	R-cran-strucchange>0:finance/R-cran-strucchange \
16	R-cran-sandwich>=2.2.4:math/R-cran-sandwich	17	R-cran-sandwich>=2.2.4:math/R-cran-sandwich
17		18
18	USES= cran:auto-plist	19	USES= cran:auto-plist,compiles
19		20
20	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/finance/R-cran-urca/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= urca	4	PORTNAME= urca
		5	PORTREVISION= 1
5	DISTVERSION= 1.3-0	6	DISTVERSION= 1.3-0
6	CATEGORIES= finance	7	CATEGORIES= finance
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Unit root and cointegration tests for time series data Link Here
11		12
12	LICENSE= GPLv2+	13	LICENSE= GPLv2+
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/ftp/R-cran-RCurl/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= RCurl	4	PORTNAME= RCurl
		5	PORTREVISION= 1
5	DISTVERSION= 1.95-4.8	6	DISTVERSION= 1.95-4.8
6	CATEGORIES= ftp	7	CATEGORIES= ftp
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 15-20 BUILD_DEPENDS= curl-config:ftp/curl Link Here
15	RUN_DEPENDS= R-cran-bitops>0:devel/R-cran-bitops	16	RUN_DEPENDS= R-cran-bitops>0:devel/R-cran-bitops
16	LIB_DEPENDS= libcurl.so:ftp/curl	17	LIB_DEPENDS= libcurl.so:ftp/curl
17		18
18	USES= cran:auto-plist	19	USES= cran:auto-plist,compiles
19		20
20	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/graphics/R-cran-GDD/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= GDD	4	PORTNAME= GDD
5	DISTVERSION= 0.1-13.1	5	DISTVERSION= 0.1-13.1
6	PORTREVISION= 10	6	PORTREVISION= 11
7	CATEGORIES= graphics	7	CATEGORIES= graphics
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 17-22 RUN_DEPENDS:= ${BUILD_DEPENDS} Link Here
17		17
18	WRKSRC= ${WRKDIR}/${PORTNAME}	18	WRKSRC= ${WRKDIR}/${PORTNAME}
19		19
20	USES= cran:auto-plist	20	USES= cran:auto-plist,compiles
21		21
22	.include <bsd.port.mk>	22	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/graphics/R-cran-png/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= png	4	PORTNAME= png
5	DISTVERSION= 0.1-7	5	DISTVERSION= 0.1-7
6	PORTREVISION= 3	6	PORTREVISION= 4
7	CATEGORIES= graphics	7	CATEGORIES= graphics
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 15-20 LICENSE_COMB= dual Link Here
15		15
16	LIB_DEPENDS= libpng.so:graphics/png	16	LIB_DEPENDS= libpng.so:graphics/png
17		17
18	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
19		19
20	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/graphics/R-cran-rtiff/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= rtiff	4	PORTNAME= rtiff
5	PORTVERSION= 1.4.5	5	PORTVERSION= 1.4.5
		6	PORTREVISION= 1
6	CATEGORIES= graphics	7	CATEGORIES= graphics
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 14-20 LICENSE= GPLv3 Link Here
14	LIB_DEPENDS= libtiff.so:graphics/tiff	15	LIB_DEPENDS= libtiff.so:graphics/tiff
15	RUN_DEPENDS= R-cran-pixmap>0:graphics/R-cran-pixmap	16	RUN_DEPENDS= R-cran-pixmap>0:graphics/R-cran-pixmap
16		17
17	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
18		19
19	LDFLAGS+= -L${LOCALBASE}/lib	20	LDFLAGS+= -L${LOCALBASE}/lib
20		21

Lines 2-7 Link Here

(-)b/math/R-cran-Amelia/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= Amelia	4	PORTNAME= Amelia
		5	PORTREVISION= 1
5	DISTVERSION= 1.7.4	6	DISTVERSION= 1.7.4
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 17-22 BUILD_DEPENDS= R-cran-Rcpp>=0.11:devel/R-cran-Rcpp \ Link Here
17	RUN_DEPENDS= R-cran-Rcpp>=0.11:devel/R-cran-Rcpp \	18	RUN_DEPENDS= R-cran-Rcpp>=0.11:devel/R-cran-Rcpp \
18	R-cran-RcppArmadillo>=0:math/R-cran-RcppArmadillo	19	R-cran-RcppArmadillo>=0:math/R-cran-RcppArmadillo
19		20
20	USES= cran:auto-plist	21	USES= cran:auto-plist,compiles
21		22
22	.include <bsd.port.mk>	23	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-Matching/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= Matching	4	PORTNAME= Matching
		5	PORTREVISION= 1
5	DISTVERSION= 4.9-2	6	DISTVERSION= 4.9-2
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= Multivariate and Propensity Score Matching with Balance Optimization Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/math/R-cran-NMF/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= NMF	4	PORTNAME= NMF
5	PORTVERSION= 0.20.6	5	PORTVERSION= 0.20.6
		6	PORTREVISION= 1
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 25-30 RUN_DEPENDS= R-cran-pkgmaker>=0.20:devel/R-cran-pkgmaker \ Link Here
25	R-cran-ggplot2>0:graphics/R-cran-ggplot2 \	26	R-cran-ggplot2>0:graphics/R-cran-ggplot2 \
26	R-cran-reshape2>0:devel/R-cran-reshape2	27	R-cran-reshape2>0:devel/R-cran-reshape2
27		28
28	USES= cran:auto-plist	29	USES= cran:auto-plist,compiles
29		30
30	.include <bsd.port.mk>	31	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-RHmm/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= RHmm	4	PORTNAME= RHmm
5	PORTVERSION= 2.0.3	5	PORTVERSION= 2.0.3
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
9		9
Lines 13-18 COMMENT= Hidden Markov Models simulations and estimations Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-RSvgDevice/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= RSvgDevice	4	PORTNAME= RSvgDevice
5	PORTVERSION= 0.6.4.4	5	PORTVERSION= 0.6.4.4
6	PORTREVISION= 1	6	PORTREVISION= 2
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
9		9
Lines 13-18 COMMENT= R SVG graphics device Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-VGAM/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= VGAM	4	PORTNAME= VGAM
		5	PORTREVISION= 1
5	DISTVERSION= 1.0-3	6	DISTVERSION= 1.0-3
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= Vector Generalized Linear and Additive Models Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-bdsmatrix/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= bdsmatrix	4	PORTNAME= bdsmatrix
5	DISTVERSION= 1.3-2	5	DISTVERSION= 1.3-2
6	PORTREVISION= 1	6	PORTREVISION= 2
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 12-17 COMMENT= Routines for Block Diagonal Symmetric matrices Link Here
12		12
13	LICENSE= LGPL20	13	LICENSE= LGPL20
14		14
15	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
16		16
17	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 23-28 TEST_DEPENDS= R-cran-lmtest>0:finance/R-cran-lmtest \ Link Here

(-)b/math/R-cran-car/Makefile (-2 lines)
23		23
24	USES= cran:auto-plist	24	USES= cran:auto-plist
25		25
26	NO_ARCH= yes
27
28	.include <bsd.port.mk>	26	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-dplyr/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= dplyr	4	PORTNAME= dplyr
		5	PORTREVISION= 1
5	DISTVERSION= 0.5.0	6	DISTVERSION= 0.5.0
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 21-26 BUILD_DEPENDS= R-cran-Rcpp>=0.11:devel/R-cran-Rcpp \ Link Here
21	R-cran-assertthat>=0:math/R-cran-assertthat	22	R-cran-assertthat>=0:math/R-cran-assertthat
22	RUN_DEPENDS:= ${BUILD_DEPENDS}	23	RUN_DEPENDS:= ${BUILD_DEPENDS}
23		24
24	USES= cran:auto-plist	25	USES= cran:auto-plist,compiles
25		26
26	.include <bsd.port.mk>	27	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-fracdiff/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= fracdiff	4	PORTNAME= fracdiff
5	DISTVERSION= 1.4-2	5	DISTVERSION= 1.4-2
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 13-18 COMMENT= Fractionally differenced ARIMA aka ARFIMA(p,d,q) models Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-geepack/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= geepack	4	PORTNAME= geepack
		5	PORTREVISION= 1
5	DISTVERSION= 1.2-1	6	DISTVERSION= 1.2-1
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Generalized Estimating Equation Package Link Here
11		12
12	LICENSE= GPLv3	13	LICENSE= GPLv3
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>





PORTNAME=	gpclib
DISTVERSION=	1.5-5
PORTREVISION=	6
CATEGORIES=	math
DISTNAME=	${PORTNAME}_${DISTVERSION}

MAINTAINER=	wen@FreeBSD.org
COMMENT=	General Polygon Clipping Library for R

USES=		cran:auto-plist,compiles

.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-igraph/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= igraph	4	PORTNAME= igraph
		5	PORTREVISION= 1
5	DISTVERSION= 1.0.1	6	DISTVERSION= 1.0.1
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 17-23 RUN_DEPENDS= R-cran-magrittr>0:devel/R-cran-magrittr \ Link Here
17	R-cran-NMF>0:math/R-cran-NMF \	18	R-cran-NMF>0:math/R-cran-NMF \
18	R-cran-irlba>0:math/R-cran-irlba	19	R-cran-irlba>0:math/R-cran-irlba
19		20
20	USES= cran:auto-plist	21	USES= cran:auto-plist,compiles
21	USE_GNOME= libxml2	22	USE_GNOME= libxml2
22		23
23	.include <bsd.port.pre.mk>	24	.include <bsd.port.pre.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-lazyeval/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= lazyeval	4	PORTNAME= lazyeval
		5	PORTREVISION= 1
5	DISTVERSION= 0.2.0	6	DISTVERSION= 0.2.0
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Disciplined approach to non-standard evaluation Link Here
11		12
12	LICENSE= GPLv3	13	LICENSE= GPLv3
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/math/R-cran-minqa/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= minqa	4	PORTNAME= minqa
5	PORTVERSION= 1.2.4	5	PORTVERSION= 1.2.4
		6	PORTREVISION= 1
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 13-18 LICENSE= GPLv2 Link Here
13		14
14	RUN_DEPENDS= R-cran-Rcpp>=0.9.10:devel/R-cran-Rcpp	15	RUN_DEPENDS= R-cran-Rcpp>=0.9.10:devel/R-cran-Rcpp
15		16
16	USES= cran:auto-plist	17	USES= cran:auto-plist,compiles
17		18
18	.include <bsd.port.mk>	19	.include <bsd.port.mk>





PORTNAME=	mvtnorm
PORTVERSION=	0.9.96
PORTREVISION=	16
CATEGORIES=	math
DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}

MAINTAINER=	wen@FreeBSD.org
COMMENT=	Multivariate Normal and t Distributions

USES=		cran:auto-plist,compiles

.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/math/R-cran-nloptr/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= nloptr	4	PORTNAME= nloptr
5	PORTVERSION= 1.0.4	5	PORTVERSION= 1.0.4
		6	PORTREVISION= 1
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 13-19 LICENSE= LGPL3 Link Here
13		14
14	LIB_DEPENDS= libnlopt.so:math/nlopt	15	LIB_DEPENDS= libnlopt.so:math/nlopt
15		16
16	USES= cran:auto-plist pkgconfig	17	USES= cran:auto-plist,compiles pkgconfig
17		18
18	post-patch:	19	post-patch:
19	@${REINPLACE_CMD} -e 's/<<</</' ${WRKSRC}/configure	20	@${REINPLACE_CMD} -e 's/<<</</' ${WRKSRC}/configure

Lines 3-9 Link Here

(-)b/math/R-cran-nnls/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= nnls	4	PORTNAME= nnls
5	PORTVERSION= 1.4	5	PORTVERSION= 1.4
6	PORTREVISION= 7	6	PORTREVISION= 8
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
9		9
Lines 12-17 COMMENT= R implementation of an algorithm for non-negative least squares Link Here
12		12
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
16		16
17	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-quadprog/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= quadprog	4	PORTNAME= quadprog
5	DISTVERSION= 1.5-5	5	DISTVERSION= 1.5-5
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 13-18 COMMENT= Functions to solve Quadratic Programming Problems Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-rgenoud/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= rgenoud	4	PORTNAME= rgenoud
		5	PORTREVISION= 1
5	DISTVERSION= 5.7-12.4	6	DISTVERSION= 5.7-12.4
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= R Version of GENetic Optimization Using Derivatives Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>





PORTNAME=	sm
DISTVERSION=	2.2-5.4
PORTREVISION=	2
CATEGORIES=	math
DISTNAME=	${PORTNAME}_${DISTVERSION}

MAINTAINER=	wen@FreeBSD.org
COMMENT=	Smoothing methods for nonparametric regression and density estimation

USES=		cran:auto-plist,compiles

.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-sp/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= sp	4	PORTNAME= sp
		5	PORTREVISION= 1
5	DISTVERSION= 1.2-4	6	DISTVERSION= 1.2-4
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= R Classes and Methods for Spatial Data Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/math/R-cran-truncnorm/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= truncnorm	4	PORTNAME= truncnorm
		5	PORTREVISION= 1
5	DISTVERSION= 1.0-7	6	DISTVERSION= 1.0-7
6	CATEGORIES= math	7	CATEGORIES= math
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= Truncated normal distribution Link Here
11		12
12	LICENSE= GPLv2	13	LICENSE= GPLv2
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/math/R-cran-xts/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= xts	4	PORTNAME= xts
5	DISTVERSION= 0.9-7	5	DISTVERSION= 0.9-7
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
Lines 15-20 LICENSE_COMB= dual Link Here
15		15
16	RUN_DEPENDS= R-cran-zoo>=1.7.10:math/R-cran-zoo	16	RUN_DEPENDS= R-cran-zoo>=1.7.10:math/R-cran-zoo
17		17
18	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
19		19
20	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 3-9 Link Here

(-)b/science/R-cran-AMORE/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= AMORE	4	PORTNAME= AMORE
5	PORTVERSION= 0.2.14	5	PORTVERSION= 0.2.14
6	PORTREVISION= 2	6	PORTREVISION= 3
7	CATEGORIES= science	7	CATEGORIES= science
8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}	8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
9		9
Lines 13-18 COMMENT= MORE flexible neural network package Link Here
13	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
14	LICENSE_COMB= dual	14	LICENSE_COMB= dual
15		15
16	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
17		17
18	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/science/R-cran-DCluster/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= DCluster	4	PORTNAME= DCluster
		5	PORTREVISION= 1
5	DISTVERSION= 0.2-7	6	DISTVERSION= 0.2-7
6	CATEGORIES= science	7	CATEGORIES= science
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 14-19 LICENSE_COMB= dual Link Here
14		15
15	RUN_DEPENDS= R-cran-spdep>0:math/R-cran-spdep	16	RUN_DEPENDS= R-cran-spdep>0:math/R-cran-spdep
16		17
17	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
18		19
19	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/science/R-cran-bayesm/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= bayesm	4	PORTNAME= bayesm
		5	PORTREVISION= 1
5	DISTVERSION= 3.0-2	6	DISTVERSION= 3.0-2
6	CATEGORIES= science	7	CATEGORIES= science
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 14-19 LICENSE_COMB= dual Link Here
14		15
15	RUN_DEPENDS= R-cran-RcppArmadillo>=0:math/R-cran-RcppArmadillo	16	RUN_DEPENDS= R-cran-RcppArmadillo>=0:math/R-cran-RcppArmadillo
16		17
17	USES= cran:auto-plist	18	USES= cran:auto-plist,compiles
18		19
19	.include <bsd.port.mk>	20	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/science/R-cran-cmprsk/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= cmprsk	4	PORTNAME= cmprsk
		5	PORTREVISION= 1
5	DISTVERSION= 2.2-7	6	DISTVERSION= 2.2-7
6	CATEGORIES= science	7	CATEGORIES= science
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= Subdistribution Analysis of Competing Risks Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>





PORTNAME=	eco
PORTVERSION=	3.1.6
PORTREVISION=	6
CATEGORIES=	science
DISTNAME=	${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}

MAINTAINER=	wen@FreeBSD.org
COMMENT=	R Package for Ecological Inference in 2x2 Tables

USES=		cran:auto-plist,compiles

.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/science/R-cran-etm/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= etm	4	PORTNAME= etm
		5	PORTREVISION= 1
5	DISTVERSION= 0.6-2	6	DISTVERSION= 0.6-2
6	CATEGORIES= science	7	CATEGORIES= science
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 12-17 COMMENT= Empirical Transition Matrix Link Here
12	LICENSE= GPLv2 GPLv3	13	LICENSE= GPLv2 GPLv3
13	LICENSE_COMB= dual	14	LICENSE_COMB= dual
14		15
15	USES= cran:auto-plist	16	USES= cran:auto-plist,compiles
16		17
17	.include <bsd.port.mk>	18	.include <bsd.port.mk>

Lines 13-18 COMMENT= HTML exportation for R objects Link Here

(-)b/textproc/R-cran-R2HTML/Makefile (-1 lines)
13	LICENSE= GPLv2	13	LICENSE= GPLv2
14		14
15	USES= cran	15	USES= cran
16	NO_ARCH= yes
17		16
18	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/textproc/R-cran-markdown/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= markdown	4	PORTNAME= markdown
5	PORTVERSION= 0.8	5	PORTVERSION= 0.8
		6	PORTREVISION= 1
6	CATEGORIES= textproc	7	CATEGORIES= textproc
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 15-20 CRAN_DEPENDS= R-cran-mime>=0.3:misc/R-cran-mime Link Here
15	BUILD_DEPENDS= ${CRAN_DEPENDS}	16	BUILD_DEPENDS= ${CRAN_DEPENDS}
16	RUN_DEPENDS= ${CRAN_DEPENDS}	17	RUN_DEPENDS= ${CRAN_DEPENDS}
17		18
18	USES= cran:auto-plist	19	USES= cran:auto-plist,compiles
19		20
20	.include <bsd.port.mk>	21	.include <bsd.port.mk>

Lines 2-7 Link Here

(-)b/textproc/R-cran-pystr/Makefile (-1 / +2 lines)
2	# $FreeBSD$	2	# $FreeBSD$
3		3
4	PORTNAME= pystr	4	PORTNAME= pystr
		5	PORTREVISION= 1
5	DISTVERSION= 2.0.0	6	DISTVERSION= 2.0.0
6	CATEGORIES= textproc	7	CATEGORIES= textproc
7	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
Lines 11-16 COMMENT= String operations the Python way Link Here
11		12
12	RUN_DEPENDS= R-cran-Rcpp>=0.11.4.6:devel/R-cran-Rcpp	13	RUN_DEPENDS= R-cran-Rcpp>=0.11.4.6:devel/R-cran-Rcpp
13		14
14	USES= cran:auto-plist	15	USES= cran:auto-plist,compiles
15		16
16	.include <bsd.port.mk>	17	.include <bsd.port.mk>

Lines 3-8 Link Here

(-)b/www/R-cran-httpuv/Makefile (-1 / +2 lines)
3		3
4	PORTNAME= httpuv	4	PORTNAME= httpuv
5	PORTVERSION= 1.3.3	5	PORTVERSION= 1.3.3
		6	PORTREVISION= 1
6	CATEGORIES= www	7	CATEGORIES= www
7	DISTNAME= ${PORTNAME}_${PORTVERSION}	8	DISTNAME= ${PORTNAME}_${PORTVERSION}
8		9
Lines 18-23 LICENSE_PERMS_NODE= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept Link Here
18	RUN_DEPENDS= R-cran-Rcpp>=0.11.0:devel/R-cran-Rcpp	19	RUN_DEPENDS= R-cran-Rcpp>=0.11.0:devel/R-cran-Rcpp
19		20
20	MAKE_ENV= MAKE=${MAKE_CMD}	21	MAKE_ENV= MAKE=${MAKE_CMD}
21	USES= cran:auto-plist gmake	22	USES= cran:auto-plist,compiles gmake
22		23
23	.include <bsd.port.mk>	24	.include <bsd.port.mk>

Return to bug 218976

Lines 797-805 perlcore() { Link Here

(-)b/Mk/Scripts/qa.sh (-1 / +15 lines)
797	fi	797	fi
798	}	798	}
799		799
		800	no_arch() {
		801	[ -z "$NO_ARCH" ] && return
		802	while read f; do
		803	[ -z "$f" ] && continue
		804	err "'${f#${STAGEDIR}${PREFIX}/}' is a architecture specific binary file and you have NO_ARCH=$NO_ARCH set"
		805	done <<-EOF
		806	$(find ${STAGEDIR} -type f \
		807	\| xargs file -N \
		808	\| grep -E ': ELF .* [LM]SB ., ., version [0-9]+ \(FreeBSD\)' \
		809	\| cut -f 1 -d :)
		810	EOF
		811	}
		812
		813
800	checks="shebang symlinks paths stripped desktopfileutils sharedmimeinfo"	814	checks="shebang symlinks paths stripped desktopfileutils sharedmimeinfo"
801	checks="$checks suidfiles libtool libperl prefixvar baselibs terminfo"	815	checks="$checks suidfiles libtool libperl prefixvar baselibs terminfo"
802	checks="$checks proxydeps sonames perlcore"	816	checks="$checks proxydeps sonames perlcore no_arch"
803		817
804	ret=0	818	ret=0
805	cd ${STAGEDIR}	819	cd ${STAGEDIR}

Lines 3-15 Link Here

(-)b/math/R-cran-gpclib/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= gpclib	4	PORTNAME= gpclib
5	DISTVERSION= 1.5-5	5	DISTVERSION= 1.5-5
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= General Polygon Clipping Library for R	11	COMMENT= General Polygon Clipping Library for R
12		12
13	USES= cran:auto-plist	13	USES= cran:auto-plist,compiles
14		14
15	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 3-15 Link Here

(-)b/math/R-cran-mvtnorm/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= mvtnorm	4	PORTNAME= mvtnorm
5	PORTVERSION= 0.9.96	5	PORTVERSION= 0.9.96
6	PORTREVISION= 15	6	PORTREVISION= 16
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}	8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
9		9
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Multivariate Normal and t Distributions	11	COMMENT= Multivariate Normal and t Distributions
12		12
13	USES= cran:auto-plist	13	USES= cran:auto-plist,compiles
14		14
15	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 3-15 Link Here

(-)b/math/R-cran-sm/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= sm	4	PORTNAME= sm
5	DISTVERSION= 2.2-5.4	5	DISTVERSION= 2.2-5.4
6	PORTREVISION= 1	6	PORTREVISION= 2
7	CATEGORIES= math	7	CATEGORIES= math
8	DISTNAME= ${PORTNAME}_${DISTVERSION}	8	DISTNAME= ${PORTNAME}_${DISTVERSION}
9		9
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= Smoothing methods for nonparametric regression and density estimation	11	COMMENT= Smoothing methods for nonparametric regression and density estimation
12		12
13	USES= cran:auto-plist	13	USES= cran:auto-plist,compiles
14		14
15	.include <bsd.port.mk>	15	.include <bsd.port.mk>

Lines 3-15 Link Here

(-)b/science/R-cran-eco/Makefile (-2 / +2 lines)
3		3
4	PORTNAME= eco	4	PORTNAME= eco
5	PORTVERSION= 3.1.6	5	PORTVERSION= 3.1.6
6	PORTREVISION= 5	6	PORTREVISION= 6
7	CATEGORIES= science	7	CATEGORIES= science
8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}	8	DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
9		9
10	MAINTAINER= wen@FreeBSD.org	10	MAINTAINER= wen@FreeBSD.org
11	COMMENT= R Package for Ecological Inference in 2x2 Tables	11	COMMENT= R Package for Ecological Inference in 2x2 Tables
12		12
13	USES= cran:auto-plist	13	USES= cran:auto-plist,compiles
14		14
15	.include <bsd.port.mk>	15	.include <bsd.port.mk>