Attachment 185769 Details for Bug 220986 – Fix packaging, openblas

[patch] Fix packaging, openblas

updated5-numpy.patch (text/plain), 52.26 KB, created by rsmith on 2017-08-25 21:24:23 UTC

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Creator: rsmith

Created: 2017-08-25 21:24:23 UTC

Size: 52.26 KB

patch

obsolete

>diff -ruN py-numpy.orig/files/patch-numpy_core_src_npymath_npy__math__complex.c.src py-numpy/files/patch-numpy_core_src_npymath_npy__math__complex.c.src
>--- py-numpy.orig/files/patch-numpy_core_src_npymath_npy__math__complex.c.src	2015-10-16 07:22:49.000000000 +0200
>+++ py-numpy/files/patch-numpy_core_src_npymath_npy__math__complex.c.src	2017-08-25 23:01:29.050643000 +0200
>@@ -1,6 +1,6 @@
> Revert changes in revision c15f774, "remove a bunch of compiler warnings"
> 
>---- numpy/core/src/npymath/npy_math_complex.c.src.orig	2015-08-11 17:03:43 UTC
>+--- numpy/core/src/npymath/npy_math_complex.c.src.orig	2017-07-06 22:59:01 UTC
> +++ numpy/core/src/npymath/npy_math_complex.c.src
> @@ -33,13 +33,12 @@
>   */
>diff -ruN py-numpy.orig/files/patch-numpy_f2py_setup.py py-numpy/files/patch-numpy_f2py_setup.py
>--- py-numpy.orig/files/patch-numpy_f2py_setup.py	2015-10-07 08:18:00.000000000 +0200
>+++ py-numpy/files/patch-numpy_f2py_setup.py	2017-08-25 23:01:29.063914000 +0200
>@@ -1,4 +1,4 @@
>---- numpy/f2py/setup.py.orig	2015-08-11 17:03:43 UTC
>+--- numpy/f2py/setup.py.orig	2017-07-06 22:59:01 UTC
> +++ numpy/f2py/setup.py
> @@ -55,7 +55,7 @@ def configuration(parent_package='', top
>      config.make_svn_version_py()
>diff -ruN py-numpy.orig/files/patch-numpy-distutils-fcompiler-__init__.py py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
>--- py-numpy.orig/files/patch-numpy-distutils-fcompiler-__init__.py	2015-01-02 17:36:43.000000000 +0100
>+++ py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py	2017-08-25 23:01:29.053357000 +0200
>@@ -1,6 +1,6 @@
>---- numpy/distutils/fcompiler/__init__.py.orig	2008-04-06 23:03:15.000000000 +0900
>-+++ numpy/distutils/fcompiler/__init__.py	2008-04-06 23:08:56.000000000 +0900
>-@@ -179,7 +179,7 @@
>+--- numpy/distutils/fcompiler/__init__.py.orig	2017-07-06 22:59:01 UTC
>++++ numpy/distutils/fcompiler/__init__.py
>+@@ -179,7 +179,7 @@ class FCompiler(CCompiler):
>      # gnu95 compiler type when there are F90 sources.
>      suggested_f90_compiler = None
>  
>diff -ruN py-numpy.orig/files/patch-numpy-distutils-fcompiler-gnu.py py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py
>--- py-numpy.orig/files/patch-numpy-distutils-fcompiler-gnu.py	2015-10-07 08:18:00.000000000 +0200
>+++ py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py	2017-08-25 23:01:29.055995000 +0200
>@@ -1,20 +1,20 @@
>---- numpy/distutils/fcompiler/gnu.py.orig	2015-09-13 16:21:27 UTC
>+--- numpy/distutils/fcompiler/gnu.py.orig	2017-07-06 22:59:01 UTC
> +++ numpy/distutils/fcompiler/gnu.py
>-@@ -83,7 +83,7 @@ class GnuFCompiler(FCompiler):
>+@@ -81,7 +81,7 @@ class GnuFCompiler(FCompiler):
>              return None
>          return v[1]
>  
> -    possible_executables = ['g77', 'f77']
>-+    possible_executables = ['%%FC%%', 'g77', 'f77']
>++    possible_executables = ['gfortran5', 'g77', 'f77']
>      executables = {
>          'version_cmd'  : [None, "-dumpversion"],
>          'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
>-@@ -107,11 +107,13 @@ class GnuFCompiler(FCompiler):
>+@@ -105,11 +105,13 @@ class GnuFCompiler(FCompiler):
>          for key in ['version_cmd', 'compiler_f77', 'linker_so', 'linker_exe']:
>              executables[key].append('-mno-cygwin')
>  
> -    g2c = 'g2c'
>-+    g2c = '%%FC%%'
>++    g2c = 'gfortran5'
>      suggested_f90_compiler = 'gnu95'
>  
>      def get_flags_linker_so(self):
>@@ -24,12 +24,12 @@
>          if sys.platform == 'darwin':
>              target = os.environ.get('MACOSX_DEPLOYMENT_TARGET', None)
>              # If MACOSX_DEPLOYMENT_TARGET is set, we simply trust the value
>-@@ -265,7 +267,7 @@ class Gnu95FCompiler(GnuFCompiler):
>+@@ -261,7 +263,7 @@ class Gnu95FCompiler(GnuFCompiler):
>                      self.executables[key].append('-mno-cygwin')
>          return v
>  
> -    possible_executables = ['gfortran', 'f95']
>-+    possible_executables = ['%%FC%%', 'gfortran', 'f95']
>++    possible_executables = ['gfortran5', 'gfortran', 'f95']
>      executables = {
>          'version_cmd'  : ["<F90>", "-dumpversion"],
>          'compiler_f77' : [None, "-Wall", "-g", "-ffixed-form",
>diff -ruN py-numpy.orig/files/patch-numpy-distutils-system_info.py py-numpy/files/patch-numpy-distutils-system_info.py
>--- py-numpy.orig/files/patch-numpy-distutils-system_info.py	2017-03-19 14:06:48.000000000 +0100
>+++ py-numpy/files/patch-numpy-distutils-system_info.py	2017-08-25 23:01:29.058624000 +0200
>@@ -1,6 +1,6 @@
>---- numpy/distutils/system_info.py.orig	2016-10-03 23:42:24 UTC
>+--- numpy/distutils/system_info.py.orig	2017-07-06 22:59:01 UTC
> +++ numpy/distutils/system_info.py
>-@@ -1038,8 +1038,8 @@ class atlas_info(system_info):
>+@@ -1039,8 +1039,8 @@ class atlas_info(system_info):
>      dir_env_var = 'ATLAS'
>      _lib_names = ['f77blas', 'cblas']
>      if sys.platform[:7] == 'freebsd':
>@@ -11,15 +11,3 @@
>      else:
>          _lib_atlas = ['atlas']
>          _lib_lapack = ['lapack']
>-@@ -1574,11 +1574,6 @@ class blas_opt_info(system_info):
>-             self.set_info(**blas_mkl_info)
>-             return
>- 
>--        openblas_info = get_info('openblas')
>--        if openblas_info:
>--            self.set_info(**openblas_info)
>--            return
>--
>-         atlas_info = get_info('atlas_3_10_blas_threads')
>-         if not atlas_info:
>-             atlas_info = get_info('atlas_3_10_blas')
>diff -ruN py-numpy.orig/files/patch-numpy-f2py-f2py2e.py py-numpy/files/patch-numpy-f2py-f2py2e.py
>--- py-numpy.orig/files/patch-numpy-f2py-f2py2e.py	2015-01-02 17:36:43.000000000 +0100
>+++ py-numpy/files/patch-numpy-f2py-f2py2e.py	2017-08-25 23:01:29.061237000 +0200
>@@ -1,14 +1,14 @@
>---- numpy/f2py/f2py2e.py.orig	2014-10-26 10:36:14.000000000 -0400
>-+++ numpy/f2py/f2py2e.py	2014-12-11 07:52:11.000000000 -0500
>-@@ -516,6 +516,7 @@
>+--- numpy/f2py/f2py2e.py.orig	2017-07-06 22:59:01 UTC
>++++ numpy/f2py/f2py2e.py
>+@@ -582,6 +582,7 @@ def run_compile():
>      include_dirs, sources = filter_files('-I', '', sources, remove_prefix=1)
>      library_dirs, sources = filter_files('-L', '', sources, remove_prefix=1)
>      libraries, sources = filter_files('-l', '', sources, remove_prefix=1)
> +    extra_link_args, sources = filter_files('-Wl,|-B|-f','',sources,remove_prefix=0)
>      undef_macros, sources = filter_files('-U', '', sources, remove_prefix=1)
>      define_macros, sources = filter_files('-D', '', sources, remove_prefix=1)
>-     using_numarray = 0
>-@@ -551,6 +552,7 @@
>+     for i in range(len(define_macros)):
>+@@ -608,6 +609,7 @@ def run_compile():
>                  'undef_macros': undef_macros,
>                  'extra_objects': extra_objects,
>                  'f2py_options': f2py_flags,
>diff -ruN py-numpy.orig/files/patch-numpy-setup.py py-numpy/files/patch-numpy-setup.py
>--- py-numpy.orig/files/patch-numpy-setup.py	1970-01-01 01:00:00.000000000 +0100
>+++ py-numpy/files/patch-numpy-setup.py	2017-08-25 23:01:29.066516000 +0200
>@@ -0,0 +1,10 @@
>+--- numpy/setup.py.orig	2017-07-06 22:59:01 UTC
>++++ numpy/setup.py
>+@@ -20,7 +20,6 @@ def configuration(parent_package='',top_
>+     config.add_subpackage('random')
>+     config.add_subpackage('testing')
>+     config.add_data_dir('doc')
>+-    config.add_data_dir('tests')
>+     config.make_config_py() # installs __config__.py
>+     return config
>+ 
>diff -ruN py-numpy.orig/Makefile py-numpy/Makefile
>--- py-numpy.orig/Makefile	2017-08-22 11:39:36.881486000 +0200
>+++ py-numpy/Makefile	2017-08-22 11:39:26.968348000 +0200
>@@ -4,7 +4,7 @@
> PORTNAME=	numpy
> PORTVERSION=	1.13.1
> DISTVERSIONPREFIX=	v
>-PORTREVISION=	1
>+PORTREVISION=	2
> PORTEPOCH=	1
> CATEGORIES=	math python
> MASTER_SITES=	http://docs.scipy.org/doc/${PORTNAME}-${PORTVERSION:C/\.[0-9]+$/.0/}/:doc
>@@ -14,7 +14,7 @@
> EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
> 
> MAINTAINER=	python@FreeBSD.org
>-COMMENT=	The New Numeric Extension to Python
>+COMMENT=	New Numeric Extension to Python
> 
> LICENSE=	BSD3CLAUSE
> LICENSE_FILE=	${WRKSRC}/LICENSE.txt
>@@ -23,7 +23,7 @@
> PYDISTUTILS_CONFIGUREARGS=	--fcompiler=gnu95
> USES=		fortran python
> USE_GITHUB=	yes
>-USE_PYTHON=	concurrent distutils py3kplist
>+USE_PYTHON=	concurrent distutils autoplist
> LDFLAGS+=	-shared
> 
> OPTIONS_DEFINE=		DOCS SUITESPARSE TESTS
>@@ -45,10 +45,12 @@
> SUITESPARSE_LIB_DEPENDS=libumfpack.so:math/suitesparse
> TESTS_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}nose>=0:devel/py-nose
> 
>+POST_PLIST=	remove-src-from-plist
> BUILD_DEPENDS+=	cython:lang/cython
> 
> .include <bsd.port.pre.mk>
> 
>+PLIST_FILES+=	man/man1/f2py-${PYTHON_VER}.1.gz
> .if ${PYTHON_VERSION} == ${PYTHON_DEFAULT_VERSION}
> PLIST_FILES+=	man/man1/f2py.1.gz
> .endif
>@@ -95,6 +97,9 @@
> .endif
> 	${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name '*.so' | ${XARGS} ${STRIP_CMD}
> 
>+remove-src-from-plist:
>+	@${SED} -e '/src$$/d' -i.bak ${TMPPLIST}
>+
> post-install-DOCS-on:
> 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
> 	${INSTALL_DATA} ${DISTDIR}/${PORTNAME}-ref-${PORTVERSION:C/\.[0-9]+$/.0/}.pdf ${STAGEDIR}${DOCSDIR}
>diff -ruN py-numpy.orig/pkg-plist py-numpy/pkg-plist
>--- py-numpy.orig/pkg-plist	2017-08-16 10:08:21.819206000 +0200
>+++ py-numpy/pkg-plist	1970-01-01 01:00:00.000000000 +0100
>@@ -1,774 +0,0 @@
>-bin/f2py
>-%%PYTHON_SITELIBDIR%%/numpy/__config__.py
>-%%PYTHON_SITELIBDIR%%/numpy/__config__.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/__config__.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/__init__.py
>-%%PYTHON_SITELIBDIR%%/numpy/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/__init__.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/_distributor_init.py
>-%%PYTHON_SITELIBDIR%%/numpy/_distributor_init.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/_distributor_init.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/_globals.py
>-%%PYTHON_SITELIBDIR%%/numpy/_globals.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/_globals.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/_import_tools.py
>-%%PYTHON_SITELIBDIR%%/numpy/_import_tools.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/_import_tools.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.py
>-%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/compat/__init__.py
>-%%PYTHON_SITELIBDIR%%/numpy/compat/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/compat/__init__.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/compat/_inspect.py
>-%%PYTHON_SITELIBDIR%%/numpy/compat/_inspect.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/compat/_inspect.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/compat/py3k.py
>-%%PYTHON_SITELIBDIR%%/numpy/compat/py3k.pyc
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>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/_polybase.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/chebyshev.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/chebyshev.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/chebyshev.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite_e.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite_e.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/hermite_e.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/laguerre.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/laguerre.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/laguerre.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/legendre.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/legendre.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/legendre.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polynomial.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polynomial.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polynomial.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polyutils.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polyutils.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/polyutils.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/setup.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/setup.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/setup.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_chebyshev.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_classes.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_hermite.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_hermite_e.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_laguerre.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_legendre.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_polynomial.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_polyutils.py
>-%%PYTHON_SITELIBDIR%%/numpy/polynomial/tests/test_printing.py
>-%%PYTHON_SITELIBDIR%%/numpy/random/__init__.py
>-%%PYTHON_SITELIBDIR%%/numpy/random/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/random/__init__.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/random/info.py
>-%%PYTHON_SITELIBDIR%%/numpy/random/info.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/random/info.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/random/mtrand.so
>-%%PYTHON_SITELIBDIR%%/numpy/random/randomkit.h
>-%%PYTHON_SITELIBDIR%%/numpy/random/setup.py
>-%%PYTHON_SITELIBDIR%%/numpy/random/setup.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/random/setup.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/random/tests/test_random.py
>-%%PYTHON_SITELIBDIR%%/numpy/random/tests/test_regression.py
>-%%PYTHON_SITELIBDIR%%/numpy/setup.py
>-%%PYTHON_SITELIBDIR%%/numpy/setup.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/setup.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/__init__.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/__init__.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/__init__.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/decorators.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/decorators.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/decorators.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/noseclasses.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/noseclasses.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/noseclasses.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/nosetester.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/nosetester.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/nosetester.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/print_coercion_tables.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/print_coercion_tables.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/print_coercion_tables.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/setup.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/setup.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/setup.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/testing/tests/test_decorators.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/tests/test_doctesting.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/tests/test_utils.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/utils.py
>-%%PYTHON_SITELIBDIR%%/numpy/testing/utils.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/testing/utils.%%PYTHON_PYOEXTENSION%%
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_ctypeslib.py
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_matlib.py
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_numpy_version.py
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_reloading.py
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_scripts.py
>-%%PYTHON_SITELIBDIR%%/numpy/tests/test_warnings.py
>-%%PYTHON_SITELIBDIR%%/numpy/version.py
>-%%PYTHON_SITELIBDIR%%/numpy/version.pyc
>-%%PYTHON_SITELIBDIR%%/numpy/version.%%PYTHON_PYOEXTENSION%%
>-man/man1/f2py-%%PYTHON_VER%%.1.gz

Actions: View | Diff

Attachments on bug 220986: 184682 | 185496 | 185602 | 185630 | 185635 | 185658 | 185726 | 185751 | 185758 | 185769 | 185770 | 186063