View | Details | Raw Unified | Return to bug 225682 | Differences between
and this patch

Collapse All | Expand All

(-)seqan/distinfo (-3 / +3 lines)
Lines 1-3 Link Here
1
TIMESTAMP = 1473846790
1
TIMESTAMP = 1517832492
2
SHA256 (seqan-library-2.2.0.tar.xz) = b5c036a3d2fc2fe5f2d57dcd4d7c523a6df146ab7b44bc789f42004b058d72fd
2
SHA256 (seqan-library-2.4.0.tar.xz) = dd97b1514ab83acb7d7be911b157979e188e8ca72cc61c430c1e0fd03bcd41a5
3
SIZE (seqan-library-2.2.0.tar.xz) = 5223004
3
SIZE (seqan-library-2.4.0.tar.xz) = 4868868
(-)seqan/Makefile (-3 / +3 lines)
Lines 2-8 Link Here
2
# $FreeBSD: head/biology/seqan/Makefile 422156 2016-09-14 19:38:58Z pawel $
2
# $FreeBSD: head/biology/seqan/Makefile 422156 2016-09-14 19:38:58Z pawel $
3
3
4
PORTNAME=	seqan
4
PORTNAME=	seqan
5
PORTVERSION=	2.2.0
5
PORTVERSION=	2.4.0
6
CATEGORIES=	biology
6
CATEGORIES=	biology
7
MASTER_SITES=	http://packages.seqan.de/seqan-library/
7
MASTER_SITES=	http://packages.seqan.de/seqan-library/
8
DISTNAME=	${PORTNAME}-library-${PORTVERSION}
8
DISTNAME=	${PORTNAME}-library-${PORTVERSION}
Lines 23-30 Link Here
23
23
24
do-install:
24
do-install:
25
	cd ${WRKSRC}/include/ && ${COPYTREE_SHARE} ./${PORTNAME} ${STAGEDIR}/${PREFIX}/include
25
	cd ${WRKSRC}/include/ && ${COPYTREE_SHARE} ./${PORTNAME} ${STAGEDIR}/${PREFIX}/include
26
	${MKDIR} ${STAGEDIR}/${PREFIX}/share/cmake/Modules
26
	${MKDIR} ${STAGEDIR}/${PREFIX}/lib/cmake/seqan/
27
	${INSTALL_DATA} ${WRKSRC}/share/cmake/Modules/FindSeqAn.cmake ${STAGEDIR}/${PREFIX}/share/cmake/Modules/
27
	${INSTALL_DATA} ${WRKSRC}/share/cmake/seqan/seqan-config.cmake ${STAGEDIR}/${PREFIX}/lib/cmake/seqan/
28
	${MKDIR} ${STAGEDIR}/${PREFIX}/libdata/pkgconfig
28
	${MKDIR} ${STAGEDIR}/${PREFIX}/libdata/pkgconfig
29
	${INSTALL_DATA} ${WRKSRC}/share/pkgconfig/seqan-2.pc ${STAGEDIR}/${PREFIX}/libdata/pkgconfig/
29
	${INSTALL_DATA} ${WRKSRC}/share/pkgconfig/seqan-2.pc ${STAGEDIR}/${PREFIX}/libdata/pkgconfig/
30
30
(-)seqan/pkg-plist (-120 / +95 lines)
Lines 6-11 Link Here
6
include/seqan/align/align_iterator_base.h
6
include/seqan/align/align_iterator_base.h
7
include/seqan/align/align_metafunctions.h
7
include/seqan/align/align_metafunctions.h
8
include/seqan/align/align_traceback.h
8
include/seqan/align/align_traceback.h
9
include/seqan/align/aligned_sequence_concept.h
9
include/seqan/align/alignment_algorithm_tags.h
10
include/seqan/align/alignment_algorithm_tags.h
10
include/seqan/align/alignment_operations.h
11
include/seqan/align/alignment_operations.h
11
include/seqan/align/dp_algorithm_impl.h
12
include/seqan/align/dp_algorithm_impl.h
Lines 62-67 Link Here
62
include/seqan/align_extend/align_extend.h
63
include/seqan/align_extend/align_extend.h
63
include/seqan/align_extend/align_extend_base.h
64
include/seqan/align_extend/align_extend_base.h
64
include/seqan/align_extend/dp_scout_xdrop.h
65
include/seqan/align_extend/dp_scout_xdrop.h
66
include/seqan/align_parallel.h
67
include/seqan/align_parallel/async_wave_execution_interface.h
68
include/seqan/align_parallel/dp_kernel_adaptor.h
69
include/seqan/align_parallel/dp_parallel_execution_policies.h
70
include/seqan/align_parallel/dp_parallel_scout.h
71
include/seqan/align_parallel/dp_parallel_scout_simd.h
72
include/seqan/align_parallel/dp_settings.h
73
include/seqan/align_parallel/dp_traits.h
74
include/seqan/align_parallel/parallel_align_interface.h
75
include/seqan/align_parallel/wavefront_alignment_executor.h
76
include/seqan/align_parallel/wavefront_alignment_result.h
77
include/seqan/align_parallel/wavefront_alignment_scheduler.h
78
include/seqan/align_parallel/wavefront_alignment_task.h
79
include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h
80
include/seqan/align_parallel/wavefront_task.h
81
include/seqan/align_parallel/wavefront_task_event.h
82
include/seqan/align_parallel/wavefront_task_executor.h
83
include/seqan/align_parallel/wavefront_task_queue.h
84
include/seqan/align_parallel/wavefront_task_scheduler.h
85
include/seqan/align_parallel/wavefront_task_util.h
65
include/seqan/align_profile.h
86
include/seqan/align_profile.h
66
include/seqan/align_profile/add_to_profile.h
87
include/seqan/align_profile/add_to_profile.h
67
include/seqan/align_profile/score_profile_seq.h
88
include/seqan/align_profile/score_profile_seq.h
Lines 84-89 Link Here
84
include/seqan/arg_parse/arg_parse_option.h
105
include/seqan/arg_parse/arg_parse_option.h
85
include/seqan/arg_parse/arg_parse_parse.h
106
include/seqan/arg_parse/arg_parse_parse.h
86
include/seqan/arg_parse/arg_parse_type_support.h
107
include/seqan/arg_parse/arg_parse_type_support.h
108
include/seqan/arg_parse/arg_parse_version_check.h
87
include/seqan/arg_parse/argument_parser.h
109
include/seqan/arg_parse/argument_parser.h
88
include/seqan/arg_parse/tool_doc.h
110
include/seqan/arg_parse/tool_doc.h
89
include/seqan/arg_parse/xml_support.h
111
include/seqan/arg_parse/xml_support.h
Lines 137-143 Link Here
137
include/seqan/basic/basic_metaprogramming.h
159
include/seqan/basic/basic_metaprogramming.h
138
include/seqan/basic/basic_parallelism.h
160
include/seqan/basic/basic_parallelism.h
139
include/seqan/basic/basic_proxy.h
161
include/seqan/basic/basic_proxy.h
140
include/seqan/basic/basic_simd_vector.h
141
include/seqan/basic/basic_smart_pointer.h
162
include/seqan/basic/basic_smart_pointer.h
142
include/seqan/basic/basic_stream.h
163
include/seqan/basic/basic_stream.h
143
include/seqan/basic/basic_tangle.h
164
include/seqan/basic/basic_tangle.h
Lines 267-272 Link Here
267
include/seqan/graph_algorithms/graph_algorithm_hmm.h
288
include/seqan/graph_algorithms/graph_algorithm_hmm.h
268
include/seqan/graph_algorithms/graph_algorithm_lis_his.h
289
include/seqan/graph_algorithms/graph_algorithm_lis_his.h
269
include/seqan/graph_algorithms/kruskal.h
290
include/seqan/graph_algorithms/kruskal.h
291
include/seqan/graph_algorithms/maximum_weighted_matching.h
270
include/seqan/graph_algorithms/path_growing.h
292
include/seqan/graph_algorithms/path_growing.h
271
include/seqan/graph_algorithms/prim.h
293
include/seqan/graph_algorithms/prim.h
272
include/seqan/graph_algorithms/single_source_shortest_path.h
294
include/seqan/graph_algorithms/single_source_shortest_path.h
Lines 326-331 Link Here
326
include/seqan/index/find2_base.h
348
include/seqan/index/find2_base.h
327
include/seqan/index/find2_functors.h
349
include/seqan/index/find2_functors.h
328
include/seqan/index/find2_index.h
350
include/seqan/index/find2_index.h
351
include/seqan/index/find2_index_approx.h
329
include/seqan/index/find2_index_multi.h
352
include/seqan/index/find2_index_multi.h
330
include/seqan/index/find2_vstree_factory.h
353
include/seqan/index/find2_vstree_factory.h
331
include/seqan/index/find_backtracking.h
354
include/seqan/index/find_backtracking.h
Lines 476-481 Link Here
476
include/seqan/modifier/modifier_string.h
499
include/seqan/modifier/modifier_string.h
477
include/seqan/modifier/modifier_view.h
500
include/seqan/modifier/modifier_view.h
478
include/seqan/parallel.h
501
include/seqan/parallel.h
502
include/seqan/parallel/enumerable_thread_local.h
503
include/seqan/parallel/enumerable_thread_local_iterator.h
479
include/seqan/parallel/parallel_algorithms.h
504
include/seqan/parallel/parallel_algorithms.h
480
include/seqan/parallel/parallel_atomic_misc.h
505
include/seqan/parallel/parallel_atomic_misc.h
481
include/seqan/parallel/parallel_atomic_primitives.h
506
include/seqan/parallel/parallel_atomic_primitives.h
Lines 488-493 Link Here
488
include/seqan/parallel/parallel_serializer.h
513
include/seqan/parallel/parallel_serializer.h
489
include/seqan/parallel/parallel_splitting.h
514
include/seqan/parallel/parallel_splitting.h
490
include/seqan/parallel/parallel_tags.h
515
include/seqan/parallel/parallel_tags.h
516
include/seqan/parallel/parallel_thread_pool.h
491
include/seqan/parse_lm.h
517
include/seqan/parse_lm.h
492
include/seqan/parse_lm/local_match_store.h
518
include/seqan/parse_lm/local_match_store.h
493
include/seqan/parse_lm/parse_blastn_tabular.h
519
include/seqan/parse_lm/parse_blastn_tabular.h
Lines 521-532 Link Here
521
include/seqan/reduced_aminoacid.h
547
include/seqan/reduced_aminoacid.h
522
include/seqan/reduced_aminoacid/reduced_aminoacid_base.h
548
include/seqan/reduced_aminoacid/reduced_aminoacid_base.h
523
include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
549
include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
550
include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h
551
include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h
552
include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h
553
include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h
524
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
554
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
525
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
555
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
526
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
556
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
527
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
557
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
558
include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h
559
include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h
528
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
560
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
529
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
561
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
562
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h
563
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h
564
include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h
565
include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h
566
include/seqan/rna_io.h
567
include/seqan/rna_io/bpseq_read_write.h
568
include/seqan/rna_io/connect_read_write.h
569
include/seqan/rna_io/dot_bracket_read_write.h
570
include/seqan/rna_io/ebpseq_read_write.h
571
include/seqan/rna_io/rna_header.h
572
include/seqan/rna_io/rna_io_context.h
573
include/seqan/rna_io/rna_record.h
574
include/seqan/rna_io/rna_struct_file.h
575
include/seqan/rna_io/stockholm_read_write.h
576
include/seqan/rna_io/vienna_read_write.h
530
include/seqan/roi_io.h
577
include/seqan/roi_io.h
531
include/seqan/roi_io/read_roi.h
578
include/seqan/roi_io/read_roi.h
532
include/seqan/roi_io/roi_file.h
579
include/seqan/roi_io/roi_file.h
Lines 564-569 Link Here
564
include/seqan/seeds/seeds_seed_set_unordered.h
611
include/seqan/seeds/seeds_seed_set_unordered.h
565
include/seqan/seeds/seeds_seed_simple.h
612
include/seqan/seeds/seeds_seed_simple.h
566
include/seqan/seq_io.h
613
include/seqan/seq_io.h
614
include/seqan/seq_io/bam_sam.h
567
include/seqan/seq_io/fai_index.h
615
include/seqan/seq_io/fai_index.h
568
include/seqan/seq_io/fasta_fastq.h
616
include/seqan/seq_io/fasta_fastq.h
569
include/seqan/seq_io/genomic_region.h
617
include/seqan/seq_io/genomic_region.h
Lines 606-611 Link Here
606
include/seqan/sequence_journaled/sequence_journaled.h
654
include/seqan/sequence_journaled/sequence_journaled.h
607
include/seqan/sequence_journaled/sequence_journaled_iterator.h
655
include/seqan/sequence_journaled/sequence_journaled_iterator.h
608
include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
656
include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
657
include/seqan/simd.h
658
include/seqan/simd/simd_base.h
659
include/seqan/simd/simd_base_seqan_impl.h
660
include/seqan/simd/simd_base_seqan_impl_avx2.h
661
include/seqan/simd/simd_base_seqan_impl_avx512.h
662
include/seqan/simd/simd_base_seqan_impl_sse4.2.h
663
include/seqan/simd/simd_base_seqan_interface.h
664
include/seqan/simd/simd_base_umesimd_impl.h
609
include/seqan/simple_intervals_io.h
665
include/seqan/simple_intervals_io.h
610
include/seqan/simple_intervals_io/simple_intervals_file.h
666
include/seqan/simple_intervals_io/simple_intervals_file.h
611
include/seqan/simple_intervals_io/simple_intervals_io.h
667
include/seqan/simple_intervals_io/simple_intervals_io.h
Lines 671-678 Link Here
671
include/seqan/vcf_io/vcf_record.h
727
include/seqan/vcf_io/vcf_record.h
672
include/seqan/vcf_io/write_vcf.h
728
include/seqan/vcf_io/write_vcf.h
673
include/seqan/version.h
729
include/seqan/version.h
730
lib/cmake/seqan/seqan-config.cmake
674
libdata/pkgconfig/seqan-2.pc
731
libdata/pkgconfig/seqan-2.pc
675
share/cmake/Modules/FindSeqAn.cmake
676
%%PORTDOCS%%%%DOCSDIR%%/CHANGELOG.rst
732
%%PORTDOCS%%%%DOCSDIR%%/CHANGELOG.rst
677
%%PORTDOCS%%%%DOCSDIR%%/LICENSE
733
%%PORTDOCS%%%%DOCSDIR%%/LICENSE
678
%%PORTDOCS%%%%DOCSDIR%%/README.rst
734
%%PORTDOCS%%%%DOCSDIR%%/README.rst
Lines 728-733 Link Here
728
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContainerView.html
784
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContainerView.html
729
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigFile.html
785
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigFile.html
730
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigStoreElement.html
786
%%PORTDOCS%%%%DOCSDIR%%/html/class_ContigStoreElement.html
787
%%PORTDOCS%%%%DOCSDIR%%/html/class_CountingThreadLocalManager.html
731
%%PORTDOCS%%%%DOCSDIR%%/html/class_CyclicShape.html
788
%%PORTDOCS%%%%DOCSDIR%%/html/class_CyclicShape.html
732
%%PORTDOCS%%%%DOCSDIR%%/html/class_DPBandConfig.html
789
%%PORTDOCS%%%%DOCSDIR%%/html/class_DPBandConfig.html
733
%%PORTDOCS%%%%DOCSDIR%%/html/class_DefaultJstConfig.html
790
%%PORTDOCS%%%%DOCSDIR%%/html/class_DefaultJstConfig.html
Lines 735-746 Link Here
735
%%PORTDOCS%%%%DOCSDIR%%/html/class_DeltaMap.html
792
%%PORTDOCS%%%%DOCSDIR%%/html/class_DeltaMap.html
736
%%PORTDOCS%%%%DOCSDIR%%/html/class_Deque.html
793
%%PORTDOCS%%%%DOCSDIR%%/html/class_Deque.html
737
%%PORTDOCS%%%%DOCSDIR%%/html/class_EdgeStump.html
794
%%PORTDOCS%%%%DOCSDIR%%/html/class_EdgeStump.html
795
%%PORTDOCS%%%%DOCSDIR%%/html/class_EnumerableThreadLocal.html
738
%%PORTDOCS%%%%DOCSDIR%%/html/class_Exception.html
796
%%PORTDOCS%%%%DOCSDIR%%/html/class_Exception.html
797
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExecutionPolicy.html
739
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfig.html
798
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfig.html
740
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigLarge.html
799
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigLarge.html
741
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigSize.html
800
%%PORTDOCS%%%%DOCSDIR%%/html/class_ExternalConfigSize.html
742
%%PORTDOCS%%%%DOCSDIR%%/html/class_FMIndexConfig.html
801
%%PORTDOCS%%%%DOCSDIR%%/html/class_FMIndexConfig.html
743
%%PORTDOCS%%%%DOCSDIR%%/html/class_FaiIndex.html
802
%%PORTDOCS%%%%DOCSDIR%%/html/class_FaiIndex.html
803
%%PORTDOCS%%%%DOCSDIR%%/html/class_FastFMIndexConfig.html
744
%%PORTDOCS%%%%DOCSDIR%%/html/class_File.html
804
%%PORTDOCS%%%%DOCSDIR%%/html/class_File.html
745
%%PORTDOCS%%%%DOCSDIR%%/html/class_FileMapping.html
805
%%PORTDOCS%%%%DOCSDIR%%/html/class_FileMapping.html
746
%%PORTDOCS%%%%DOCSDIR%%/html/class_Finder.html
806
%%PORTDOCS%%%%DOCSDIR%%/html/class_Finder.html
Lines 771-776 Link Here
771
%%PORTDOCS%%%%DOCSDIR%%/html/class_JoinConfig.html
831
%%PORTDOCS%%%%DOCSDIR%%/html/class_JoinConfig.html
772
%%PORTDOCS%%%%DOCSDIR%%/html/class_JournaledStringTree.html
832
%%PORTDOCS%%%%DOCSDIR%%/html/class_JournaledStringTree.html
773
%%PORTDOCS%%%%DOCSDIR%%/html/class_LF.html
833
%%PORTDOCS%%%%DOCSDIR%%/html/class_LF.html
834
%%PORTDOCS%%%%DOCSDIR%%/html/class_LevelsPrefixRDConfig.html
835
%%PORTDOCS%%%%DOCSDIR%%/html/class_LevelsRDConfig.html
774
%%PORTDOCS%%%%DOCSDIR%%/html/class_Lexical.html
836
%%PORTDOCS%%%%DOCSDIR%%/html/class_Lexical.html
775
%%PORTDOCS%%%%DOCSDIR%%/html/class_LibraryStoreElement.html
837
%%PORTDOCS%%%%DOCSDIR%%/html/class_LibraryStoreElement.html
776
%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalAlignmentEnumerator.html
838
%%PORTDOCS%%%%DOCSDIR%%/html/class_LocalAlignmentEnumerator.html
Lines 806-811 Link Here
806
%%PORTDOCS%%%%DOCSDIR%%/html/class_Repeat.html
868
%%PORTDOCS%%%%DOCSDIR%%/html/class_Repeat.html
807
%%PORTDOCS%%%%DOCSDIR%%/html/class_RevTextFibre.html
869
%%PORTDOCS%%%%DOCSDIR%%/html/class_RevTextFibre.html
808
%%PORTDOCS%%%%DOCSDIR%%/html/class_RightArrayBinaryTree.html
870
%%PORTDOCS%%%%DOCSDIR%%/html/class_RightArrayBinaryTree.html
871
%%PORTDOCS%%%%DOCSDIR%%/html/class_RnaHeader.html
872
%%PORTDOCS%%%%DOCSDIR%%/html/class_RnaIOContext.html
873
%%PORTDOCS%%%%DOCSDIR%%/html/class_RnaRecord.html
874
%%PORTDOCS%%%%DOCSDIR%%/html/class_RnaStructContents.html
875
%%PORTDOCS%%%%DOCSDIR%%/html/class_RnaStructureGraph.html
809
%%PORTDOCS%%%%DOCSDIR%%/html/class_RuntimeError.html
876
%%PORTDOCS%%%%DOCSDIR%%/html/class_RuntimeError.html
810
%%PORTDOCS%%%%DOCSDIR%%/html/class_Score.html
877
%%PORTDOCS%%%%DOCSDIR%%/html/class_Score.html
811
%%PORTDOCS%%%%DOCSDIR%%/html/class_Seed.html
878
%%PORTDOCS%%%%DOCSDIR%%/html/class_Seed.html
Lines 816-821 Link Here
816
%%PORTDOCS%%%%DOCSDIR%%/html/class_SequenceOutputOptions.html
883
%%PORTDOCS%%%%DOCSDIR%%/html/class_SequenceOutputOptions.html
817
%%PORTDOCS%%%%DOCSDIR%%/html/class_Shape.html
884
%%PORTDOCS%%%%DOCSDIR%%/html/class_Shape.html
818
%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleIntervalsIOContext.html
885
%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleIntervalsIOContext.html
886
%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleThreadLocalManager.html
819
%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleType.html
887
%%PORTDOCS%%%%DOCSDIR%%/html/class_SimpleType.html
820
%%PORTDOCS%%%%DOCSDIR%%/html/class_SparseString.html
888
%%PORTDOCS%%%%DOCSDIR%%/html/class_SparseString.html
821
%%PORTDOCS%%%%DOCSDIR%%/html/class_Splitter.html
889
%%PORTDOCS%%%%DOCSDIR%%/html/class_Splitter.html
Lines 828-833 Link Here
828
%%PORTDOCS%%%%DOCSDIR%%/html/class_Tag.html
896
%%PORTDOCS%%%%DOCSDIR%%/html/class_Tag.html
829
%%PORTDOCS%%%%DOCSDIR%%/html/class_TagList.html
897
%%PORTDOCS%%%%DOCSDIR%%/html/class_TagList.html
830
%%PORTDOCS%%%%DOCSDIR%%/html/class_TagSelector.html
898
%%PORTDOCS%%%%DOCSDIR%%/html/class_TagSelector.html
899
%%PORTDOCS%%%%DOCSDIR%%/html/class_ThreadPool.html
831
%%PORTDOCS%%%%DOCSDIR%%/html/class_ToStdAllocator.html
900
%%PORTDOCS%%%%DOCSDIR%%/html/class_ToStdAllocator.html
832
%%PORTDOCS%%%%DOCSDIR%%/html/class_ToolDoc.html
901
%%PORTDOCS%%%%DOCSDIR%%/html/class_ToolDoc.html
833
%%PORTDOCS%%%%DOCSDIR%%/html/class_Triple.html
902
%%PORTDOCS%%%%DOCSDIR%%/html/class_Triple.html
Lines 868-873 Link Here
868
%%PORTDOCS%%%%DOCSDIR%%/html/concept_IntegerConcept.html
937
%%PORTDOCS%%%%DOCSDIR%%/html/concept_IntegerConcept.html
869
%%PORTDOCS%%%%DOCSDIR%%/html/concept_IteratorAssociatedTypesConcept.html
938
%%PORTDOCS%%%%DOCSDIR%%/html/concept_IteratorAssociatedTypesConcept.html
870
%%PORTDOCS%%%%DOCSDIR%%/html/concept_LessThanComparableConcept.html
939
%%PORTDOCS%%%%DOCSDIR%%/html/concept_LessThanComparableConcept.html
940
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MoveConstructibleConcept.html
871
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableBidirectionalIteratorConcept.html
941
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableBidirectionalIteratorConcept.html
872
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableForwardIteratorConcept.html
942
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableForwardIteratorConcept.html
873
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableRandomAccessIteratorConcept.html
943
%%PORTDOCS%%%%DOCSDIR%%/html/concept_MutableRandomAccessIteratorConcept.html
Lines 1143-1148 Link Here
1143
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCast.html
1213
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCast.html
1144
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCastWithException.html
1214
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_lexicalCastWithException.html
1145
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_localAlignment.html
1215
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_localAlignment.html
1216
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_localAlignmentScore.html
1146
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_log2.html
1217
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_log2.html
1147
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestCommonSubsequence.html
1218
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestCommonSubsequence.html
1148
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestIncreasingSubsequence.html
1219
%%PORTDOCS%%%%DOCSDIR%%/html/global_function_longestIncreasingSubsequence.html
Lines 1287-1299 Link Here
1287
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringComplement.html
1358
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringComplement.html
1288
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverse.html
1359
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverse.html
1289
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverseComplement.html
1360
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Rna5StringReverseComplement.html
1361
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaAdjacencyIterator.html
1290
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaIterator.html
1362
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaIterator.html
1291
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaString.html
1363
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaString.html
1292
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringComplement.html
1364
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringComplement.html
1293
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverse.html
1365
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverse.html
1294
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverseComplement.html
1366
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_RnaStringReverseComplement.html
1295
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SelectableAminoAcidMatrix.html
1367
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SelectableAminoAcidMatrix.html
1368
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Sequential.html
1296
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SimpleScoreTypedef.html
1369
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_SimpleScoreTypedef.html
1370
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_TSizeRna5String.html
1297
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_TraceBack.html
1371
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_TraceBack.html
1298
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_UnicodeString.html
1372
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_UnicodeString.html
1299
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Vtml200.html
1373
%%PORTDOCS%%%%DOCSDIR%%/html/global_typedef_Vtml200.html
Lines 1390-1396 Link Here
1390
%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.js
1464
%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.js
1391
%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.smooth-scroll.js
1465
%%PORTDOCS%%%%DOCSDIR%%/html/js/jquery.smooth-scroll.js
1392
%%PORTDOCS%%%%DOCSDIR%%/html/js/lang_entities.js
1466
%%PORTDOCS%%%%DOCSDIR%%/html/js/lang_entities.js
1393
%%PORTDOCS%%%%DOCSDIR%%/html/js/less.min.js
1467
%%PORTDOCS%%%%DOCSDIR%%/html/js/less-1.4.1.js
1394
%%PORTDOCS%%%%DOCSDIR%%/html/js/link.data.js
1468
%%PORTDOCS%%%%DOCSDIR%%/html/js/link.data.js
1395
%%PORTDOCS%%%%DOCSDIR%%/html/js/module_tree.js
1469
%%PORTDOCS%%%%DOCSDIR%%/html/js/module_tree.js
1396
%%PORTDOCS%%%%DOCSDIR%%/html/js/rubydoc_custom.js
1470
%%PORTDOCS%%%%DOCSDIR%%/html/js/rubydoc_custom.js
Lines 1408-1417 Link Here
1408
%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation5.less
1482
%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/animations/animation5.less
1409
%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/less.js
1483
%%PORTDOCS%%%%DOCSDIR%%/html/lib/3L/assets/less.js
1410
%%PORTDOCS%%%%DOCSDIR%%/html/lib/README.md
1484
%%PORTDOCS%%%%DOCSDIR%%/html/lib/README.md
1411
%%PORTDOCS%%%%DOCSDIR%%/html/lib/ZeroClipboard/ZeroClipboard.min.js
1412
%%PORTDOCS%%%%DOCSDIR%%/html/lib/ZeroClipboard/ZeroClipboard.swf
1413
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/README.md
1485
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/README.md
1414
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-3.0.0.min.css
1486
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-3.0.0.css
1415
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-multiselect.css
1487
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/bootstrap-multiselect.css
1416
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/prettify.css
1488
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/css/prettify.css
1417
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/custom.html
1489
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/custom.html
Lines 1420-1444 Link Here
1420
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.ttf
1492
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.ttf
1421
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.woff
1493
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/fonts/glyphicons-halflings-regular.woff
1422
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/index.html
1494
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/index.html
1423
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-3.0.0.min.js
1495
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-3.0.0.js
1424
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-multiselect.js
1496
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/bootstrap-multiselect.js
1425
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/jquery-2.0.3.min.js
1497
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/jquery-2.0.3.js
1426
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/knockout-2.3.0.js
1498
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/knockout-2.3.0.js
1427
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/js/prettify.js
1428
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/knockout-examples.html
1499
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/knockout-examples.html
1429
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/less/bootstrap-multiselect.less
1500
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/less/bootstrap-multiselect.less
1430
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/tests.html
1501
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-multiselect/tests.html
1431
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/css/bootstrap-treeview.css
1502
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/css/bootstrap-treeview.css
1432
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/js/bootstrap-treeview.js
1503
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap-treeview/js/bootstrap-treeview.js
1433
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.css
1504
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.css
1434
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/css/bootstrap.min.css
1435
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.eot
1505
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.eot
1436
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.svg
1506
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.svg
1437
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.ttf
1507
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.ttf
1438
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.woff
1508
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/fonts/glyphicons-halflings-regular.woff
1439
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/js/bootstrap.js
1509
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/js/bootstrap.js
1440
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bootstrap/js/bootstrap.min.js
1441
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bower.json
1510
%%PORTDOCS%%%%DOCSDIR%%/html/lib/bower.json
1511
%%PORTDOCS%%%%DOCSDIR%%/html/lib/clipboard/clipboard.js
1512
%%PORTDOCS%%%%DOCSDIR%%/html/lib/clipboard/license.txt
1442
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.css
1513
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.css
1443
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.min.css
1514
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/css/font-awesome.min.css
1444
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/FontAwesome.otf
1515
%%PORTDOCS%%%%DOCSDIR%%/html/lib/font-awesome/fonts/FontAwesome.otf
Lines 1475-1590 Link Here
1475
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-GPL
1546
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-GPL
1476
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-MIT
1547
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/LICENSE-MIT
1477
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/README.markdown
1548
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/README.markdown
1478
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/files/jquery-ba-bbq-js.html
1479
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index.html
1480
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Events.html
1481
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Files.html
1482
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Functions.html
1483
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/General.html
1484
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/index/Properties.html
1485
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/javascript/main.js
1486
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/javascript/searchdata.js
1487
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ClassHierarchy.nd
1488
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ConfigFileInfo.nd
1489
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/FileInfo.nd
1490
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ImageFileInfo.nd
1491
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/ImageReferenceTable.nd
1492
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/IndexInfo.nd
1493
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/PreviousMenuState.nd
1494
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/PreviousSettings.nd
1495
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Data/SymbolTable.nd
1496
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Languages.txt
1497
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Menu.txt
1498
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/nd/Topics.txt
1499
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/EventsH.html
1500
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FilesJ.html
1501
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsA.html
1502
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsD.html
1503
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsE.html
1504
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsF.html
1505
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsG.html
1506
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsH.html
1507
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsN.html
1508
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsP.html
1509
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsQ.html
1510
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsR.html
1511
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/FunctionsS.html
1512
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralA.html
1513
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralD.html
1514
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralE.html
1515
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralF.html
1516
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralG.html
1517
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralH.html
1518
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralJ.html
1519
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralK.html
1520
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralL.html
1521
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralN.html
1522
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralP.html
1523
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralQ.html
1524
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralR.html
1525
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/GeneralS.html
1526
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/NoResults.html
1527
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/PropertiesD.html
1528
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/search/PropertiesS.html
1529
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/1.css
1530
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/2.css
1531
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/docs/styles/main.css
1532
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/config.php
1533
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/deparam/index.php
1534
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/donate.gif
1535
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/bbq.jpg
1536
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/burger.html
1537
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/burger.jpg
1538
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/chicken.html
1539
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/chicken.jpg
1540
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/index.php
1541
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kebabs.html
1542
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kebabs.jpg
1543
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kielbasa.html
1544
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/kielbasa.jpg
1545
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/ribs.html
1546
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/ribs.jpg
1547
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/steak.html
1548
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-advanced/steak.jpg
1549
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/XMLpage.php
1550
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/bbq.jpg
1551
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/burger.jpg
1552
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/chicken.jpg
1553
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/index.php
1554
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/kebabs.jpg
1555
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/kielbasa.jpg
1556
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/page.php
1557
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/pages.xml
1558
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/ribs.jpg
1559
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-ajax-crawlable/steak.jpg
1560
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/bbq.jpg
1561
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/burger.html
1562
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/burger.jpg
1563
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/chicken.html
1564
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/chicken.jpg
1565
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/index.php
1566
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kebabs.html
1567
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kebabs.jpg
1568
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kielbasa.html
1569
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/kielbasa.jpg
1570
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/ribs.html
1571
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/ribs.jpg
1572
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/steak.html
1573
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-basic/steak.jpg
1574
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/bbq.jpg
1575
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/burger.jpg
1576
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/chicken.jpg
1577
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/index.php
1578
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/kebabs.jpg
1579
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/kielbasa.jpg
1580
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/ribs.jpg
1581
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/fragment-jquery-ui-tabs/steak.jpg
1582
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/index.css
1583
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/examples/index.php
1584
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/jquery.ba-bbq.js
1549
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/jquery.ba-bbq.js
1585
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/jquery.ba-bbq.min.js
1586
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/LGPLv3.txt
1550
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/LGPLv3.txt
1587
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/clipboard.swf
1588
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushAS3.js
1551
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushAS3.js
1589
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushBash.js
1552
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushBash.js
1590
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushCSharp.js
1553
%%PORTDOCS%%%%DOCSDIR%%/html/lib/jquery-bbq/shared/SyntaxHighlighter/scripts/shBrushCSharp.js
Lines 1784-1789 Link Here
1784
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Joiner.html
1747
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Joiner.html
1785
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledSet.html
1748
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledSet.html
1786
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledString.html
1749
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_JournaledString.html
1750
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Levels.html
1787
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_LevenshteinStringEnumerator.html
1751
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_LevenshteinStringEnumerator.html
1788
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MMapString.html
1752
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MMapString.html
1789
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MapperConfig.html
1753
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_MapperConfig.html
Lines 1837-1842 Link Here
1837
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RightArrayBinaryTreeIterator.html
1801
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RightArrayBinaryTreeIterator.html
1838
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna.html
1802
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna.html
1839
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna5.html
1803
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Rna5.html
1804
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RnaStructFileIn.html
1805
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RnaStructFileOut.html
1840
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileIn.html
1806
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileIn.html
1841
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileOut.html
1807
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_RoiFileOut.html
1842
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Sampler.html
1808
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Sampler.html
Lines 1882-1888 Link Here
1882
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TrieBfamPattern.html
1848
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TrieBfamPattern.html
1883
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TristateHolder.html
1849
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TristateHolder.html
1884
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Tupler.html
1850
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_Tupler.html
1885
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_TwoLevelRankDictionary.html
1886
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileIn.html
1851
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileIn.html
1887
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileOut.html
1852
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UcscFileOut.html
1888
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UnbandedLocalAlignmentEnumerator.html
1853
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_UnbandedLocalAlignmentEnumerator.html
Lines 1894-1913 Link Here
1894
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VcfFileOut.html
1859
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VcfFileOut.html
1895
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VectorSet.html
1860
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VectorSet.html
1896
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VertexIterator.html
1861
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_VertexIterator.html
1862
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WTRDConfig.html
1863
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WavefrontExecutionPolicy.html
1897
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WaveletTree.html
1864
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WaveletTree.html
1898
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WildShiftAndPattern.html
1865
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WildShiftAndPattern.html
1899
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WordGraph.html
1866
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WordGraph.html
1900
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WuManberPattern.html
1867
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_WuManberPattern.html
1901
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipContainerView.html
1868
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipContainerView.html
1902
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipIterator.html
1869
%%PORTDOCS%%%%DOCSDIR%%/html/specialization_ZipIterator.html
1870
%%PORTDOCS%%%%DOCSDIR%%/html/tag_BlockOffsetOptimization.html
1871
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Buchfink11.html
1872
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Cannata10.html
1903
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Default.html
1873
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Default.html
1904
%%PORTDOCS%%%%DOCSDIR%%/html/tag_DotDrawing.html
1874
%%PORTDOCS%%%%DOCSDIR%%/html/tag_DotDrawing.html
1905
%%PORTDOCS%%%%DOCSDIR%%/html/tag_EditDistance.html
1875
%%PORTDOCS%%%%DOCSDIR%%/html/tag_EditDistance.html
1906
%%PORTDOCS%%%%DOCSDIR%%/html/tag_GeneticCode.html
1876
%%PORTDOCS%%%%DOCSDIR%%/html/tag_GeneticCode.html
1907
%%PORTDOCS%%%%DOCSDIR%%/html/tag_HammingDistance.html
1877
%%PORTDOCS%%%%DOCSDIR%%/html/tag_HammingDistance.html
1908
%%PORTDOCS%%%%DOCSDIR%%/html/tag_LevenshteinDistance.html
1878
%%PORTDOCS%%%%DOCSDIR%%/html/tag_LevenshteinDistance.html
1879
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Li10.html
1909
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Move.html
1880
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Move.html
1910
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Murphy10.html
1881
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Murphy10.html
1882
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Murphy5.html
1911
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Nothing.html
1883
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Nothing.html
1884
%%PORTDOCS%%%%DOCSDIR%%/html/tag_Solis10.html
1912
%%PORTDOCS%%%%DOCSDIR%%/html/variable_BAM_95FLAG_95SUPPLEMENTARY_32_61_320x0800.html
1885
%%PORTDOCS%%%%DOCSDIR%%/html/variable_BAM_95FLAG_95SUPPLEMENTARY_32_61_320x0800.html
1913
%%PORTDOCS%%%%DOCSDIR%%/html/variable_LibraryStoreElementstd.html
1886
%%PORTDOCS%%%%DOCSDIR%%/html/variable_LibraryStoreElementstd.html
1887
%%PORTDOCS%%@dir %%DOCSDIR%%/html/docs/seqan
1888
%%PORTDOCS%%@dir %%DOCSDIR%%/html/lists

Return to bug 225682