FreeBSD Bugzilla – Attachment 190338 Details for
Bug 225682
[maintainer-update] biology/seqan and biology/seqan-apps
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[patch]
update for biology/seqan-apps
update_biology_seqan-apps.patch (text/plain), 2.40 KB, created by
Hannes Hauswedell
on 2018-02-05 13:58:39 UTC
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Description:
update for biology/seqan-apps
Filename:
MIME Type:
Creator:
Hannes Hauswedell
Created:
2018-02-05 13:58:39 UTC
Size:
2.40 KB
patch
obsolete
>diff -ru seqan-appsOld/distinfo seqan-apps/distinfo >--- seqan-appsOld/distinfo 2016-09-14 21:38:58.000000000 +0200 >+++ seqan-apps/distinfo 2018-02-05 13:21:28.209482000 +0100 >@@ -1,3 +1,3 @@ >-TIMESTAMP = 1473848209 >-SHA256 (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 6add074932c2723ef1fb658c88f906bdd6ced1fc34cb16a7410251ffc4cb8cc8 >-SIZE (seqan-seqan-seqan-v2.2.0_GH0.tar.gz) = 110936119 >+TIMESTAMP = 1517833288 >+SHA256 (seqan-seqan-seqan-v2.4.0_GH0.tar.gz) = d7084d17729214003e84818e0280a16f223c8f1c6a30eeef040c27e0c0047bd7 >+SIZE (seqan-seqan-seqan-v2.4.0_GH0.tar.gz) = 109626901 >diff -ru seqan-appsOld/Makefile seqan-apps/Makefile >--- seqan-appsOld/Makefile 2018-01-18 05:11:02.000000000 +0100 >+++ seqan-apps/Makefile 2018-02-05 14:50:54.783089000 +0100 >@@ -2,9 +2,8 @@ > # $FreeBSD: head/biology/seqan-apps/Makefile 459315 2018-01-18 04:11:02Z jbeich $ > > PORTNAME= seqan-apps >-PORTVERSION= 2.2.0 >+PORTVERSION= 2.4.0 > DISTVERSIONPREFIX= seqan-v >-PORTREVISION= 9 > CATEGORIES= biology > > MAINTAINER= h2+fbsdports@fsfe.org >@@ -15,22 +14,21 @@ > > BUILD_DEPENDS= boost-libs>0:devel/boost-libs > >-BROKEN_aarch64= fails to compile: Error: unknown mnemonic rep -- rep >-BROKEN_armv6= fails to compile: Error: bad instruction rep >-BROKEN_armv7= fails to compile: Error: bad instruction rep >-BROKEN_powerpc64= fails to compile: Error: unrecognized opcode: rep >- >-USE_GITHUB= yes >-GH_ACCOUNT= seqan >-GH_PROJECT= seqan >- > # once #199603 is resolved, do the following instead of USE_GCC > # USES= cmake:outsource compiler:openmp,c++14-lang > USES= cmake:outsource > CMAKE_ARGS= -DSEQAN_BUILD_SYSTEM="SEQAN_RELEASE_APPS" > >+USE_GITHUB= yes >+GH_ACCOUNT= seqan >+GH_PROJECT= seqan >+ > USE_GCC= yes > >+OPTIONS_DEFINE= OPTIMIZED_CFLAGS >+OPTIMIZED_CFLAGS_DESC= Add machine code for SSE4 and POPCNT instructions. >+OPTIMIZED_CFLAGS_CMAKE_ON= -DSEQAN_ARCH_SSE4:BOOL=true >+ > .include <bsd.port.pre.mk> > > .if ${ARCH} == "i386" >diff -ru seqan-appsOld/pkg-plist seqan-apps/pkg-plist >--- seqan-appsOld/pkg-plist 2016-05-10 02:52:04.000000000 +0200 >+++ seqan-apps/pkg-plist 2018-02-05 13:37:31.665719000 +0100 >@@ -48,6 +48,7 @@ > bin/tree_recon > bin/yara_indexer > bin/yara_mapper >+man/man1/sak.1.gz > share/doc/alf/LICENSE > share/doc/alf/README > share/doc/alf/example/small.fasta >@@ -117,7 +118,6 @@ > share/doc/sak/LICENSE > share/doc/sak/README > share/doc/sak/README.sak.txt >-share/doc/sak/man/sak.1 > share/doc/sam2matrix/LICENSE > share/doc/sam2matrix/README > share/doc/samcat/LICENSE
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bug 225682
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