FreeBSD Bugzilla – Attachment 193945 Details for
Bug 228704
science/py-scipy 0.19.0_5: Undefined symbol "__aeabi_uidiv@GCC_3.5" on armv7
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Poudriere build log
py27-scipy-0.19.0_5.log (text/plain), 17.36 KB, created by
Ulrich Grey
on 2018-06-02 17:57:17 UTC
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Description:
Poudriere build log
Filename:
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Creator:
Ulrich Grey
Created:
2018-06-02 17:57:17 UTC
Size:
17.36 KB
patch
obsolete
>=>> Building science/py-scipy >build started at Sat Jun 2 16:31:35 UTC 2018 >port directory: /usr/ports/science/py-scipy >package name: py27-scipy-0.19.0_5 >building for: FreeBSD fbsd12-current-default-job-01 12.0-CURRENT FreeBSD 12.0-CURRENT arm >maintained by: python@FreeBSD.org >Makefile ident: $FreeBSD: head/science/py-scipy/Makefile 464084 2018-03-10 17:46:04Z gerald $ >Poudriere version: 3.2.6_1 >Host OSVERSION: 1200063 >Jail OSVERSION: 1200063 >Job Id: 01 > >---Begin Environment--- >SHELL=/bin/csh >OSVERSION=1200063 >UNAME_v=FreeBSD 12.0-CURRENT >UNAME_r=12.0-CURRENT >BLOCKSIZE=K >MAIL=/var/mail/root >STATUS=1 >HOME=/root >PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin >LOCALBASE=/usr/local >USER=root >LIBEXECPREFIX=/usr/local/libexec/poudriere >POUDRIERE_VERSION=3.2.6_1 >MASTERMNT=/usr/local/BUILD/Poudriere-current12/data/.m/fbsd12-current-default/ref >POUDRIERE_BUILD_TYPE=bulk >PACKAGE_BUILDING=yes >SAVED_TERM=vt100 >PWD=/usr/local/BUILD/Poudriere-current12/data/.m/fbsd12-current-default/ref/.p/pool >P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS >MASTERNAME=fbsd12-current-default >SCRIPTPREFIX=/usr/local/share/poudriere >OLDPWD=/usr/local/BUILD/Poudriere-current12/data/.m/fbsd12-current-default/ref/.p >SCRIPTPATH=/usr/local/share/poudriere/bulk.sh >POUDRIEREPATH=/usr/local/bin/poudriere >---End Environment--- > >---Begin Poudriere Port Flags/Env--- >PORT_FLAGS= >PKGENV= >FLAVOR=py27 >DEPENDS_ARGS= >MAKE_ARGS= FLAVOR=py27 >---End Poudriere Port Flags/Env--- > >---Begin OPTIONS List--- >===> The following configuration options are available for py27-scipy-0.19.0_5: > DOCS=on: Build and/or install documentation >===> Use 'make config' to modify these settings >---End OPTIONS List--- > >--MAINTAINER-- >python@FreeBSD.org >--End MAINTAINER-- > >--CONFIGURE_ARGS-- > >--End CONFIGURE_ARGS-- > >--CONFIGURE_ENV-- >F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh >--End CONFIGURE_ENV-- > >--MAKE_ENV-- >F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLAGS="-O -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" >--End MAKE_ENV-- > >--PLIST_SUB-- >PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py27-scipy" EXAMPLESDIR="share/examples/py27-scipy" DATADIR="share/py27-scipy" WWWDIR="www/py27-scipy" ETCDIR="etc/py27-scipy" >--End PLIST_SUB-- > >--SUB_LIST-- >PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-scipy DOCSDIR=/usr/local/share/doc/py27-scipy EXAMPLESDIR=/usr/local/share/examples/py27-scipy WWWDIR=/usr/local/www/py27-scipy ETCDIR=/usr/local/etc/py27-scipy >--End SUB_LIST-- > >---Begin make.conf--- >USE_PACKAGE_DEPENDS=yes >BATCH=yes >WRKDIRPREFIX=/wrkdirs >PORTSDIR=/usr/ports >PACKAGES=/packages >DISTDIR=/distfiles >FORCE_PACKAGE=yes >PACKAGE_BUILDING=yes >PACKAGE_BUILDING_FLAVORS=yes >WITH_CCACHE_BUILD=yes >CCACHE_DIR=/root/.ccache >#### /usr/ports/Mk/Scripts/ports_env.sh #### >_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /usr/bin >_ALTCCVERSION_921dbbb2=none >_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" >CC_OUTPUT_921dbbb2_58173849=yes >CC_OUTPUT_921dbbb2_9bdba57c=yes >CC_OUTPUT_921dbbb2_6a4fe7f5=yes >CC_OUTPUT_921dbbb2_6bcac02b=yes >CC_OUTPUT_921dbbb2_67d20829=yes >CC_OUTPUT_921dbbb2_bfa62e83=yes >CC_OUTPUT_921dbbb2_f0b4d593=yes >CC_OUTPUT_921dbbb2_308abb44=yes >CC_OUTPUT_921dbbb2_f00456e5=yes >CC_OUTPUT_921dbbb2_65ad290d=yes >CC_OUTPUT_921dbbb2_b2657cc3=yes >CC_OUTPUT_921dbbb2_380987f7=yes >_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /usr/bin >_OBJC_ALTCCVERSION_921dbbb2=none >ARCH=armv7 >OPSYS=FreeBSD >_OSRELEASE=12.0-CURRENT >OSREL=12.0 >OSVERSION=1200063 >PYTHONBASE=/usr/local >_SMP_CPUS=4 >CONFIGURE_MAX_CMD_LEN=262144 >HAVE_PORTS_ENV=1 >#### Misc Poudriere #### >GID=0 >UID=0 >---End make.conf--- >--Resource limits-- >cpu time (seconds, -t) unlimited >file size (512-blocks, -f) unlimited >data seg size (kbytes, -d) 524288 >stack size (kbytes, -s) 8192 >core file size (512-blocks, -c) unlimited >max memory size (kbytes, -m) unlimited >locked memory (kbytes, -l) unlimited >max user processes (-u) 5547 >open files (-n) 1024 >virtual mem size (kbytes, -v) unlimited >swap limit (kbytes, -w) unlimited >socket buffer size (bytes, -b) unlimited >pseudo-terminals (-p) unlimited >kqueues (-k) unlimited >umtx shared locks (-o) unlimited >--End resource limits-- >=======================<phase: check-sanity >============================ >===> License BSD3CLAUSE accepted by the user >=========================================================================== >=======================<phase: pkg-depends >============================ >===> py27-scipy-0.19.0_5 depends on file: /usr/local/sbin/pkg - not found >===> Installing existing package /packages/All/pkg-1.10.5_1.txz >[fbsd12-current-default-job-01] Installing pkg-1.10.5_1... >[fbsd12-current-default-job-01] Extracting pkg-1.10.5_1: .......... done >===> py27-scipy-0.19.0_5 depends on file: /usr/local/sbin/pkg - found >===> Returning to build of py27-scipy-0.19.0_5 >=========================================================================== >=======================<phase: fetch-depends >============================ >=========================================================================== >=======================<phase: fetch >============================ >===> License BSD3CLAUSE accepted by the user >===> Fetching all distfiles required by py27-scipy-0.19.0_5 for building >=========================================================================== >=======================<phase: checksum >============================ >===> License BSD3CLAUSE accepted by the user >===> Fetching all distfiles required by py27-scipy-0.19.0_5 for building >=> SHA256 Checksum OK for scipy-0.19.0.zip. >=> SHA256 Checksum OK for scipy-ref-0.19.0.pdf. >=========================================================================== >=======================<phase: extract-depends>============================ >=========================================================================== >=======================<phase: extract >============================ >===> License BSD3CLAUSE accepted by the user >===> Fetching all distfiles required by py27-scipy-0.19.0_5 for building >===> Extracting for py27-scipy-0.19.0_5 >=> SHA256 Checksum OK for scipy-0.19.0.zip. >=> SHA256 Checksum OK for scipy-ref-0.19.0.pdf. >=========================================================================== >=======================<phase: patch-depends >============================ >=========================================================================== >=======================<phase: patch >============================ >===> Patching for py27-scipy-0.19.0_5 >=========================================================================== >=======================<phase: build-depends >============================ >===> py27-scipy-0.19.0_5 depends on package: py27-numpy>0 - not found >===> Installing existing package /packages/All/py27-numpy-1.13.3_3,1.txz >[fbsd12-current-default-job-01] Installing py27-numpy-1.13.3_3,1... >[fbsd12-current-default-job-01] `-- Installing blas-3.5.0_4... >[fbsd12-current-default-job-01] | `-- Installing gcc6-6.4.0_7... >[fbsd12-current-default-job-01] | | `-- Installing binutils-2.30_3,1... >[fbsd12-current-default-job-01] | | `-- Installing gettext-runtime-0.19.8.1_1... >[fbsd12-current-default-job-01] | | | `-- Installing indexinfo-0.3.1... >[fbsd12-current-default-job-01] | | | `-- Extracting indexinfo-0.3.1: .... done >[fbsd12-current-default-job-01] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done >[fbsd12-current-default-job-01] | | `-- Extracting binutils-2.30_3,1: .......... done >[fbsd12-current-default-job-01] | | `-- Installing gmp-6.1.2... >[fbsd12-current-default-job-01] | | `-- Extracting gmp-6.1.2: .......... done >[fbsd12-current-default-job-01] | | `-- Installing mpc-1.1.0_1... >[fbsd12-current-default-job-01] | | `-- Installing mpfr-4.0.1... >[fbsd12-current-default-job-01] | | `-- Extracting mpfr-4.0.1: .......... done >[fbsd12-current-default-job-01] | | `-- Extracting mpc-1.1.0_1: ...... done >[fbsd12-current-default-job-01] | `-- Extracting gcc6-6.4.0_7: .......... done >[fbsd12-current-default-job-01] `-- Extracting blas-3.5.0_4: ....... done >[fbsd12-current-default-job-01] `-- Installing cblas-1.0_8... >[fbsd12-current-default-job-01] `-- Extracting cblas-1.0_8: ......... done >[fbsd12-current-default-job-01] `-- Installing lapack-3.5.0_4... >[fbsd12-current-default-job-01] `-- Extracting lapack-3.5.0_4: .......... done >[fbsd12-current-default-job-01] `-- Installing py27-setuptools-39.0.1... >[fbsd12-current-default-job-01] | `-- Installing python27-2.7.15... >[fbsd12-current-default-job-01] | | `-- Installing libffi-3.2.1_2... >[fbsd12-current-default-job-01] | | `-- Extracting libffi-3.2.1_2: .......... done >[fbsd12-current-default-job-01] | | `-- Installing readline-7.0.3_1... >[fbsd12-current-default-job-01] | | `-- Extracting readline-7.0.3_1: .......... done >[fbsd12-current-default-job-01] | `-- Extracting python27-2.7.15: ...make: Working in: /usr/ports/science/py-scipy >....... done >[fbsd12-current-default-job-01] `-- Extracting py27-setuptools-39.0.1: .......... done >[fbsd12-current-default-job-01] `-- Installing suitesparse-5.2.0... >[fbsd12-current-default-job-01] | `-- Installing metis-5.1.0_4... >[fbsd12-current-default-job-01] | `-- Extracting metis-5.1.0_4: .......... done >[fbsd12-current-default-job-01] | `-- Installing openblas-0.2.20_2,1... >[fbsd12-current-default-job-01] | `-- Extracting openblas-0.2.20_2,1: ......... done >[fbsd12-current-default-job-01] `-- Extracting suitesparse-5.2.0: .......... done >[fbsd12-current-default-job-01] Extracting py27-numpy-1.13.3_3,1: .......... done >Message from gcc6-6.4.0_7: > >To ensure binaries built with this toolchain find appropriate versions >of the necessary run-time libraries, you may want to link using > > -Wl,-rpath=/usr/local/lib/gcc6 > >For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens >transparently. >Message from cblas-1.0_8: > >===> NOTICE: > >The cblas port currently does not have a maintainer. As a result, it is >more likely to have unresolved issues, not be up-to-date, or even be removed in >the future. To volunteer to maintain this port, please create an issue at: > >https://bugs.freebsd.org/bugzilla > >More information about port maintainership is available at: > >https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port >Message from python27-2.7.15: > >=========================================================================== > >Note that some standard Python modules are provided as separate ports >as they require additional dependencies. They are available as: > >bsddb databases/py-bsddb >gdbm databases/py-gdbm >sqlite3 databases/py-sqlite3 >tkinter x11-toolkits/py-tkinter > >=========================================================================== >Message from metis-5.1.0_4: > >===> NOTICE: > >The metis port currently does not have a maintainer. As a result, it is >more likely to have unresolved issues, not be up-to-date, or even be removed in >the future. To volunteer to maintain this port, please create an issue at: > >https://bugs.freebsd.org/bugzilla > >More information about port maintainership is available at: > >https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port >===> py27-scipy-0.19.0_5 depends on package: py27-numpy>0 - found >===> Returning to build of py27-scipy-0.19.0_5 >===> py27-scipy-0.19.0_5 depends on executable: gfortran6 - found >===> py27-scipy-0.19.0_5 depends on package: py27-setuptools>0 - found >===> py27-scipy-0.19.0_5 depends on file: /usr/local/bin/python2.7 - found >===> py27-scipy-0.19.0_5 depends on file: /usr/local/bin/as - found >===> py27-scipy-0.19.0_5 depends on file: /usr/local/bin/ccache - not found >===> Installing existing package /packages/All/ccache-3.3.5_2.txz >[fbsd12-current-default-job-01] Installing ccache-3.3.5_2... >[fbsd12-current-default-job-01] Extracting ccache-3.3.5_2: .......... done >Create compiler links... >create symlink for cc >create symlink for cc (world) >create symlink for c++ >create symlink for c++ (world) >create symlink for CC >create symlink for CC (world) >create symlink for gcc6 >create symlink for gcc6 (world) >create symlink for g++6 >create symlink for g++6 (world) >create symlink for clang >create symlink for clang (world) >create symlink for clang++ >create symlink for clang++ (world) >Message from ccache-3.3.5_2: > >NOTE: >Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for >information on using ccache with FreeBSD ports and src. >===> py27-scipy-0.19.0_5 depends on file: /usr/local/bin/ccache - found >===> Returning to build of py27-scipy-0.19.0_5 >=========================================================================== >=======================<phase: lib-depends >============================ >=========================================================================== >=======================<phase: configure >============================ >===> Configuring for py27-scipy-0.19.0_5 >setup.py:323: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates > warnings.warn("Unrecognized setuptools command, proceeding with " >Traceback (most recent call last): > File "<string>", line 1, in <module> > File "setup.py", line 416, in <module> > setup_package() > File "setup.py", line 396, in setup_package > from numpy.distutils.core import setup > File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> > from . import add_newdocs > File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module> > from numpy.lib import add_newdoc > File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module> > from .type_check import * > File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module> > import numpy.core.numeric as _nx > File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module> > raise ImportError(msg) >ImportError: >Importing the multiarray numpy extension module failed. Most >likely you are trying to import a failed build of numpy. >If you're working with a numpy git repo, try `git clean -xdf` (removes all >files not under version control). Otherwise reinstall numpy. > >Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" > >*** Error code 1 > >Stop. >make: stopped in /usr/ports/science/py-scipy >=>> Cleaning up wrkdir >===> Cleaning for py27-scipy-0.19.0_5 >build of science/py-scipy | py27-scipy-0.19.0_5 ended at Sat Jun 2 16:35:13 UTC 2018 >build time: 00:03:39 >!!! build failure encountered !!!
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